# List of top-scoring protein chains for t04-w0.5-1-CB_burial_14_7-0.3-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://compbio.soe.ucsc.edu/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 3by6A 126 3.21e-10 2wv0A 243 2.91e-09 2ek5A 129 3.84e-09 3ic7A 126 3.88e-09 1hw1A 239 9.10e-08 a.4.5.6,a.78.1.1 16111,18441 3eetA 274 1.00e-07 3edpA 236 2.60e-07 3bwgA 239 4.21e-07 a.4.5.6,d.190.1.2 155693,155694 2hs5A 239 1.16e-05 a.4.5.6,a.78.1.1 147379,147380 2di3A 239 1.19e-05 3f8mA 248 7.36e-05 3fmsA 209 9.17e-05 3ihuA 222 9.24e-05 3c7jA 237 0.000112 2dtr 226 0.02696 1fx7A 230 0.03882 a.4.5.24,a.76.1.1,b.34.1.2 60088,60089,60090 2dtrA 226 0.04119 a.4.5.24,a.76.1.1,b.34.1.2 16193,18399,24450 2qq9A 226 0.1370 1on2A 142 0.2573 a.4.5.24,a.76.1.1 87103,87104 2h09A 155 2.052 2hr3A 147 2.139 a.4.5.28 136678 1z91A 147 2.893 a.4.5.28 124736 1bia 321 3.296 2cohA 202 3.310 a.4.5.4,b.82.3.2 130677,130678 2oqgA 114 3.538 2fbkA 181 3.556 a.4.5.28 133247 2pexA 153 3.769 1lj9A 144 3.906 a.4.5.28 78035 3bp8A 406 3.973 a.4.5.63,c.55.1.10,c.55.1.10 155463,155464,155465 2pjpA 121 4.054 1mkmA 249 4.086 a.4.5.33,d.110.2.2 79242,79243 2ev0A 142 4.368 a.4.5.24,a.76.1.1 132413,132414 1r1tA 122 4.497 a.4.5.5 104769 2h6cA 232 4.527 a.4.5.4,b.82.3.2 147232,147233 3e6cC 250 4.529 a.4.5.4,b.82.3.2 158038,158039 1sfxA 109 4.538 a.4.5.50 105505 3kfwX 247 4.579 3d0sA 227 4.808 3e97A 231 4.900 2o0yA 260 5.190 1r1uA 106 5.321 a.4.5.5 104771 2fmyA 220 5.521 3ctaA 230 5.523 a.4.5.28,b.43.5.2 156979,156980 1xd7A 145 5.774 a.4.5.55 109566 2fbiA 142 5.846 a.4.5.28 133246 3dv8A 220 5.903 2fbhA 146 5.926 a.4.5.28 133245 1smtA 122 6.175 a.4.5.5 16109 2g7uA 257 6.356 2a61A 145 6.618 a.4.5.28 126187 2ia2A 265 6.770 3deuA 166 7.075 a.4.5.28 157600 2nnnA 140 7.126 3cuoA 99 7.569 1s3jA 155 7.728 a.4.5.28 98437 2ethA 154 8.109 a.4.5.28 132358 2v79A 135 9.026 3e5xA 250 9.148 3g3zA 145 9.355 1rztA 331 9.360 a.60.6.1,a.60.12.1,d.218.1.2 98224,98225,98226 3gw2A 108 9.484 3cdhA 155 10.32 3hsrA 140 10.62 2gxgA 146 11.17 1u2wA 122 11.23 a.4.5.5 119487 3broA 141 12.35 a.4.5.28 155517 1lnwA 147 12.37 a.4.5.28 78104 3jthA 98 12.86 2bv6A 142 13.05 a.4.5.28 146218 2zkzA 99 13.15 2zdbA 195 13.17 3ecoA 139 13.82 1z6rA 406 14.28 a.4.5.63,c.55.1.10,c.55.1.10 124557,124558,124559 3l09A 266 14.39 1biaA 321 15.93 a.4.5.1,b.34.1.1,d.104.1.2 16083,24447,40787 3bpvA 138 16.21 2zcwA 202 16.50 3fm5A 150 17.50 2f2eA 146 17.91 a.4.5.69 132808 1p4xA 250 17.94 a.4.5.28,a.4.5.28 87784,87785 1hkqA 132 18.04 a.4.5.10 83555 3f6oA 118 18.05 1i6xA 209 18.73 a.4.5.4,b.82.3.2 83673,83674 2fa5A 162 18.92 1jgsA 138 19.10 a.4.5.28 66683 2bduA 297 20.09 c.108.1.21 146135 3cjnA 162 20.60 3e6mA 161 20.71 2b0lA 102 20.92 a.4.5.66 127641 2h6bA 250 21.09 a.4.5.4,b.82.3.2 147228,147229 1ulyA 192 21.12 a.4.5.58 113297 2nyxA 168 23.39 2ia0A 171 24.20 3f6vA 151 24.42 3k69A 162 24.51 1yg2A 179 24.90 a.4.5.61 116681 3bj6A 152 25.16 2rdpA 150 25.40 3boqA 160 25.59 1vin 268 25.81 2rn7A 108 26.89 1ub9A 100 28.05 a.4.5.28 99159 2g09A 297 28.63 2ivmA 150 30.39 2qwwA 154 31.59 2frhA 127 31.90 a.4.5.28 133988 2cg4A 152 32.42 a.4.5.32,d.58.4.2 130417,130418 2qlzA 232 33.47 3ez2A 398 34.64 3lwfA 159 35.57 3bddA 142 37.44 3jw4A 148 39.44 3bjaA 139 39.67 2cfxA 144 42.29 a.4.5.32,d.58.4.2 130395,130396 2gauA 232 43.04 a.4.5.4,b.82.3.2 134894,134895 3fx3A 237 45.17 2hm7A 310 45.58 1ylfA 149 46.01 a.4.5.55 123648 2d1hA 109 50.25 a.4.5.50 131125 1q1hA 110 52.77 a.4.5.41 95580 2fe3A 145 55.88 1j5yA 187 56.58 a.4.5.1,d.94.2.1 71592,71593 2gqqA 163 58.30 2p5vA 162 69.51 3gwzA 369 69.69 1ri7A 171 71.09 a.4.5.32,d.58.4.2 97504,97505 3gfjA 146 71.12 1xmaA 145 71.63 a.4.5.61 115477 2jmlA 81 74.32 2qz8A 149 76.96 3h03A 258 77.47 1tbxA 99 79.56 a.4.5.48 106748 2hoeA 380 81.43 a.4.5.63,c.55.1.10,c.55.1.10 136639,136640,136641 2f5yA 91 82.59 b.36.1.1 133015 3gflA 146 82.78 3k0lA 162 83.66 3i4pA 162 86.60 2cyyA 151 86.98 a.4.5.32,d.58.4.2 131028,131029