# List of top-scoring protein chains for t04-w0.5-1-CB8-sep9-0.3-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://compbio.soe.ucsc.edu/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 3by6A 126 2.44e-13 2ek5A 129 2.09e-12 3ic7A 126 2.31e-12 2wv0A 243 1.50e-11 3edpA 236 9.76e-11 1hw1A 239 1.95e-10 a.4.5.6,a.78.1.1 16111,18441 3eetA 274 3.90e-10 3bwgA 239 7.92e-10 a.4.5.6,d.190.1.2 155693,155694 2di3A 239 4.94e-08 2hs5A 239 6.21e-08 a.4.5.6,a.78.1.1 147379,147380 3f8mA 248 4.47e-07 3ihuA 222 8.01e-07 3fmsA 209 1.59e-06 3c7jA 237 1.99e-06 2dtr 226 0.000658 2dtrA 226 0.001081 a.4.5.24,a.76.1.1,b.34.1.2 16193,18399,24450 1fx7A 230 0.001456 a.4.5.24,a.76.1.1,b.34.1.2 60088,60089,60090 2qq9A 226 0.005624 1on2A 142 0.008602 a.4.5.24,a.76.1.1 87103,87104 2hr3A 147 0.2048 a.4.5.28 136678 1bia 321 0.2331 2h09A 155 0.3291 2ev0A 142 0.3450 a.4.5.24,a.76.1.1 132413,132414 1lj9A 144 0.4047 a.4.5.28 78035 2oqgA 114 0.4118 3ctaA 230 0.4164 a.4.5.28,b.43.5.2 156979,156980 2pjpA 121 0.4450 1r1uA 106 0.6247 a.4.5.5 104771 2ethA 154 0.6425 a.4.5.28 132358 2fbkA 181 0.6931 a.4.5.28 133247 2a61A 145 0.7294 a.4.5.28 126187 3e5xA 250 0.7596 1r1tA 122 0.8218 a.4.5.5 104769 2fbhA 146 0.8734 a.4.5.28 133245 2cohA 202 0.9088 a.4.5.4,b.82.3.2 130677,130678 2fmyA 220 1.009 2f2eA 146 1.015 a.4.5.69 132808 1mkmA 249 1.063 a.4.5.33,d.110.2.2 79242,79243 1lnwA 147 1.086 a.4.5.28 78104 1u2wA 122 1.112 a.4.5.5 119487 3e6cC 250 1.117 a.4.5.4,b.82.3.2 158038,158039 3f6oA 118 1.153 1smtA 122 1.156 a.4.5.5 16109 1z91A 147 1.240 a.4.5.28 124736 3bp8A 406 1.255 a.4.5.63,c.55.1.10,c.55.1.10 155463,155464,155465 2v79A 135 1.313 1sfxA 109 1.358 a.4.5.50 105505 3cuoA 99 1.366 1s3jA 155 1.390 a.4.5.28 98437 3f6vA 151 1.427 2fbiA 142 1.467 a.4.5.28 133246 1xd7A 145 1.520 a.4.5.55 109566 3gw2A 108 1.592 3dv8A 220 1.593 3broA 141 1.740 a.4.5.28 155517 2nnnA 140 1.780 2o0yA 260 1.852 1jgsA 138 1.889 a.4.5.28 66683 3l09A 266 2.160 3g3zA 145 2.169 3cdhA 155 2.281 1ulyA 192 2.510 a.4.5.58 113297 2gxgA 146 2.537 3ecoA 139 2.724 1biaA 321 2.909 a.4.5.1,b.34.1.1,d.104.1.2 16083,24447,40787 2zdbA 195 3.061 2zkzA 99 3.125 3d0sA 227 3.171 3deuA 166 3.189 a.4.5.28 157600 2b0lA 102 3.298 a.4.5.66 127641 1rztA 331 3.365 a.60.6.1,a.60.12.1,d.218.1.2 98224,98225,98226 3bpvA 138 3.365 1i6xA 209 3.377 a.4.5.4,b.82.3.2 83673,83674 2g7uA 257 3.599 3e97A 231 3.600 3kfwX 247 3.910 3jthA 98 4.123 2rn7A 108 4.317 2ia2A 265 4.544 2fa5A 162 4.773 2pexA 153 4.879 3e6mA 161 5.041 2bv6A 142 5.566 a.4.5.28 146218 3bj6A 152 5.796 2rdpA 150 6.468 2h6cA 232 6.751 a.4.5.4,b.82.3.2 147232,147233 1hkqA 132 7.038 a.4.5.10 83555 3boqA 160 7.122 3hsrA 140 7.720 2zcwA 202 7.809 3fm5A 150 7.891 2frhA 127 8.533 a.4.5.28 133988 3ez2A 398 8.838 1ub9A 100 9.008 a.4.5.28 99159 3cjnA 162 9.273 2qlzA 232 9.307 3k69A 162 9.359 3bddA 142 10.29 3jw4A 148 10.84 3k0lA 162 10.92 3bjaA 139 10.94 1z6rA 406 11.38 a.4.5.63,c.55.1.10,c.55.1.10 124557,124558,124559 3eqxA 373 12.18 2ia0A 171 12.57 1p4xA 250 14.35 a.4.5.28,a.4.5.28 87784,87785 2nyxA 168 14.89 1yg2A 179 14.93 a.4.5.61 116681 3lwfA 159 15.14 2hm7A 310 15.26 1xmaA 145 15.97 a.4.5.61 115477 2gauA 232 16.57 a.4.5.4,b.82.3.2 134894,134895 1vin 268 16.65 3gflA 146 16.93 3gfjA 146 18.18 1ri7A 171 19.77 a.4.5.32,d.58.4.2 97504,97505 3gfmA 146 19.84 2gqqA 163 22.35 1hw5A 210 24.02 a.4.5.4,b.82.3.2 16098,28137 2hoeA 380 24.37 a.4.5.63,c.55.1.10,c.55.1.10 136639,136640,136641 2ivmA 150 25.81 3b73A 111 26.18 1q1hA 110 26.18 a.4.5.41 95580 1ylfA 149 27.00 a.4.5.55 123648 2cfxA 144 27.52 a.4.5.32,d.58.4.2 130395,130396 3fx3A 237 29.21 3f3xA 144 29.49 2cg4A 152 32.03 a.4.5.32,d.58.4.2 130417,130418 1lvaA 258 35.32 a.4.5.35,a.4.5.35,a.4.5.35,a.4.5.35 74276,74277,74278,74279 2x58A 727 35.59 1v7pC 200 35.78 c.62.1.1 108408 2p5vA 162 37.89 2eshA 118 38.13 a.4.5.61 132325 3h3zA 235 40.19 1tbxA 99 42.13 a.4.5.48 106748 2j5pA 76 42.14 a.4.5.67 138050 1j5yA 187 42.56 a.4.5.1,d.94.2.1 71592,71593 1wsuA 124 43.66 a.4.5.35,a.4.5.35 121245,121246 2d1hA 109 44.43 a.4.5.50 131125 2bgcA 238 44.68 a.4.5.4,b.82.3.3 128458,128459 2qwwA 154 44.77 2bduA 297 46.37 c.108.1.21 146135 3echA 142 46.50 2eq8C 40 47.08 2p8tA 200 48.14 a.4.5.72,d.74.4.2 149315,149316 2qz8A 149 49.61 3h7rA 331 49.76 1jhgA 101 50.03 a.4.12.1 19009 1xviA 275 51.01 c.108.1.10 116088 3gwzA 369 51.91 2g09A 297 57.06 3ezfA 403 60.77 2fu4A 83 63.73 2cyyA 151 64.59 a.4.5.32,d.58.4.2 131028,131029 2jmlA 81 67.69 3hhhA 116 67.83 1g2rA 100 71.21 d.192.1.1 60231 2hztA 107 73.54 a.4.5.69 147462 3dr0A 93 74.31 3ln3A 324 74.72 3i4pA 162 75.31 3kkzA 267 75.64 2bnmA 198 77.71 a.35.1.3,b.82.1.10 128835,128836 1zybA 232 78.59 a.4.5.4,b.82.3.2 125815,125816 1zcjA 463 79.02 2obpA 96 81.08 a.4.5.71 148718 3eyyA 145 82.65 3k6eA 156 83.20 1zodA 433 83.84 c.67.1.4 125437 1hlvA 131 86.47 a.4.1.7,a.4.1.7 65854,65855 2cro 71 88.26 1jmsA 381 88.65 a.60.6.1,a.60.12.1,d.218.1.2 66889,75862,75863 2fe3A 145 89.88