# List of top-scoring protein chains for T0585.t2k-w0.5 hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.soe.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1jwqA 179 3.07e-23 c.56.5.6 90921 3czxA 182 3.50e-08 1xovA 326 3.58e-08 b.34.11.4,c.56.5.6 122206,122207 1wa3A 205 7.18e-01 c.1.10.1 120802 1vlwA 217 7.25e-01 c.1.10.1 108868 3g7eA 203 5.75e+00 1kznA 205 5.79e+00 d.122.1.2 73373 2j01C 229 6.45e+00 e.24.1.1 137861 2jk0A 325 6.69e+00 2gvnA 327 6.72e+00 3llcA 270 7.12e+00 3guxA 314 8.35e+00 1ei1A 391 8.55e+00 1aj6 d.14.1.3,d.122.1.2 37570,41104 1aj6A 219 9.64e+00 d.122.1.2 41106 1qwgA 251 9.76e+00 c.1.27.1 96473 1nt0A 286 1.03e+01 b.23.1.1,b.23.1.1,g.3.11.1 86143,86144,86145 1o7jA 327 1.09e+01 c.88.1.1 81140 1vsaA 229 1.24e+01 e.24.1.1 144517 2qv2A 342 1.25e+01 1ad2A 228 1.25e+01 e.24.1.1 43353 1zhoA 228 1.34e+01 e.24.1.1 145999 3k9wA 170 1.36e+01 2hw8A 228 1.38e+01 e.24.1.1 147420 1yk1A 479 1.41e+01 1yk0A 480 1.41e+01 3b5nD 64 1.43e+01 2ef5A 290 1.47e+01 2eivA 291 1.47e+01 3m1rA 322 1.55e+01 2fl7A 232 1.58e+01 2fvuA 222 1.63e+01 3e8xA 236 1.67e+01 1gvfA 286 1.75e+01 c.1.10.2 70599 2v49C 229 1.79e+01 1i9sA 210 1.79e+01 1i9sA c.45.1.1 62099 3hqfA 181 1.80e+01 2crlA 98 1.96e+01 487dH 224 2.01e+01 1ad2 i.1.1.2 45835 2c46A 241 2.36e+01 1wriA 93 2.49e+01 d.15.4.1 114838 2gb3A 409 2.63e+01 c.67.1.1 134903 1e5dA 402 2.65e+01 1e5dA c.23.5.1,d.157.1.3 31208,42061 1m6sA 347 2.70e+01 c.67.1.1 78701 2fm1A 355 2.73e+01 c.67.1.1 133756 2ldxA 331 2.88e+01 c.2.1.5,d.162.1.1 30159,42126 1mb3A 124 3.09e+01 c.23.1.1 78907 3g8rA 350 3.11e+01 1ziuA 370 3.12e+01 c.94.1.1 125138 2j69A 695 3.17e+01 2vl7A 540 3.30e+01 1t9kA 347 3.31e+01 c.124.1.5 106721 1ldmA 329 3.40e+01 c.2.1.5,d.162.1.1 30160,42127 3g77A 423 3.41e+01 6ldhA 330 3.41e+01 c.2.1.5,d.162.1.1 30161,42128 2ic4A 187 3.44e+01 1ra0A 430 3.46e+01 b.92.1.2,c.1.9.5 111756,111757 2jmpA 107 3.55e+01 1k6wA 426 3.84e+01 b.92.1.2,c.1.9.5 68236,68237 1r9zA 430 3.84e+01 b.92.1.2,c.1.9.5 111754,111755 2uwnA 187 3.93e+01 1ra5A 430 3.93e+01 b.92.1.2,c.1.9.5 111759,111760 1mkfA 382 3.96e+01 b.116.1.1 79232 1zba3 221 4.02e+01 1h7eA 245 4.02e+01 c.68.1.13 60717 2zl7A 295 4.26e+01 3d26A 301 4.31e+01 3by2A 305 4.33e+01 2zl5A 295 4.36e+01 3by1A 313 4.38e+01 2jtgA 87 4.49e+01 2pg0A 385 4.55e+01 2qm1A 326 5.06e+01 2q4aA 330 5.13e+01 b.82.2.8 139839 1na6A 404 5.15e+01 b.142.1.1,c.52.1.22 91748,91749 1r6aA 295 5.16e+01 c.66.1.25 104817 1ornA 226 5.34e+01 a.96.1.1 87342 2ko0A 87 5.52e+01 2h9fA 396 5.52e+01 d.21.1.4,d.21.1.4 147248,147249 1hfpA 186 5.62e+01 c.71.1.1 34904 1x99A 145 5.65e+01 b.97.1.2 114978 2pnfA 248 5.66e+01 1hfqA 186 5.66e+01 c.71.1.1 34903 1dlrA 186 5.68e+01 c.71.1.1 34909 1xwiA 322 5.68e+01 1u71A 186 5.68e+01 1dlsA 186 5.69e+01 c.71.1.1 34906 3eigA 186 5.69e+01 1kmvA 186 5.70e+01 c.71.1.1 72757 3fs6A 187 5.72e+01 3f8yA 187 5.72e+01 3fbyA 551 5.73e+01 3jywU 116 6.00e+01 3h0lB 478 6.16e+01 3fymA 130 6.25e+01 1p59A 226 6.27e+01 a.96.1.1 87794 1s1iU 126 6.36e+01 i.1.1.1 105195 2pw0A 397 6.37e+01 2wwbL 127 6.51e+01 1n9wA 422 6.87e+01 b.40.4.1,d.104.1.1 85473,85474 2zanA 444 6.91e+01 1zelA 298 6.94e+01 a.4.5.83,d.377.1.1 145994,145995 1wfjA 136 7.11e+01 b.7.1.2 114584 2ft3A 332 7.24e+01 1sbpA 310 7.26e+01 c.94.1.1 35760 2qgyA 391 7.34e+01 3he8A 149 7.68e+01 2p41A 305 7.71e+01 c.66.1.25 149193 3ghcA 186 7.75e+01 3f8zA 187 7.76e+01 2nacA 393 7.77e+01 2nadA c.2.1.4,c.23.12.1 30088,31348 2go1A 401 7.81e+01 1rc6A 261 7.91e+01 b.82.1.11 97287 1zmdA 474 7.95e+01 1zy8A 474 7.95e+01