# List of top-scoring protein chains for T0585.t04-w0.5 hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.soe.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1jwqA 179 2.78e-31 c.56.5.6 90921 1xovA 326 6.65e-14 b.34.11.4,c.56.5.6 122206,122207 3czxA 182 1.29e-11 3be2A 314 1.27e+00 3ewhA 314 1.29e+00 3cjfA 309 1.68e+00 2oh4A 316 1.76e+00 3eflA 314 2.17e+00 1vr2A 316 2.24e+00 1fgkA d.144.1.7 41701 1sbpA 310 2.26e+00 c.94.1.1 35760 1ywnA 316 2.30e+00 d.144.1.7 124161 3c7qA 316 2.40e+00 1y6bA 366 2.52e+00 1nt0A 286 2.87e+00 b.23.1.1,b.23.1.1,g.3.11.1 86143,86144,86145 1qwgA 251 3.08e+00 c.1.27.1 96473 3k9wA 170 3.30e+00 2jk0A 325 4.09e+00 2gvnA 327 4.09e+00 2jmpA 107 4.35e+00 1o7jA 327 4.98e+00 c.88.1.1 81140 2zl7A 295 5.96e+00 2zl5A 295 5.99e+00 3d26A 301 6.00e+00 3by2A 305 6.03e+00 3by1A 313 6.12e+00 3he8A 149 1.16e+01 3fcmA 197 1.26e+01 2ef5A 290 1.26e+01 2eivA 291 1.26e+01 2zvvA 276 1.41e+01 3hngA 360 1.68e+01 2fvuA 222 1.77e+01 2dq7X 283 1.89e+01 2fl7A 232 1.93e+01 1r6aA 295 1.96e+01 c.66.1.25 104817 2zvwA 275 1.97e+01 2jdqA 450 1.97e+01 1gvfA 286 2.02e+01 c.1.10.2 70599 2crlA 98 2.15e+01 3komA 663 2.26e+01 1x1nA 524 2.58e+01 c.1.8.1 121593 1ldmA 329 2.63e+01 c.2.1.5,d.162.1.1 30160,42127 6ldhA 330 2.66e+01 c.2.1.5,d.162.1.1 30161,42128 3m1rA 322 2.94e+01 2qjpA 428 3.10e+01 1wfxA 186 3.11e+01 d.166.1.5 114596 1hfpA 186 3.15e+01 c.71.1.1 34904 1dlsA 186 3.17e+01 c.71.1.1 34906 1u71A 186 3.18e+01 1dlrA 186 3.18e+01 c.71.1.1 34909 1kmvA 186 3.19e+01 c.71.1.1 72757 1hfqA 186 3.19e+01 c.71.1.1 34903 3f8yA 187 3.20e+01 3fs6A 187 3.20e+01 3eigA 186 3.25e+01 1qz9A 416 3.27e+01 c.67.1.3 96621 2qjkA 428 3.36e+01 3kzfA 317 3.37e+01 2i1mA 333 3.38e+01 1wqaA 455 3.50e+01 2qjyA 445 3.52e+01 1e5dA 402 3.53e+01 1e5dA c.23.5.1,d.157.1.3 31208,42061 3beaA 333 3.57e+01 1vq1A 294 3.66e+01 c.66.1.30 120067 1i9sA 210 3.67e+01 1i9sA c.45.1.1 62099 1sg9A 282 3.71e+01 c.66.1.30 105526 1nv8A 284 3.71e+01 c.66.1.30 86224 3gmiA 357 3.90e+01 2ogvA 317 3.92e+01 3a0bB 488 4.02e+01 1vixA 420 4.05e+01 c.56.5.4,d.58.19.1 100777,100778 3bz1B 510 4.08e+01 3lcdA 329 4.10e+01 1v77A 212 4.13e+01 c.6.3.2 108402 3b5nD 64 4.19e+01 2rioA 434 4.20e+01 2v3aA 384 4.20e+01 1t9kA 347 4.26e+01 c.124.1.5 106721 2i0yA 335 4.27e+01 3ghcA 186 4.29e+01 3f8zA 187 4.30e+01 3guxA 314 4.45e+01 1i1gA 141 4.58e+01 a.4.5.32,d.58.4.2 65982,65983 2p41A 305 4.61e+01 c.66.1.25 149193 2uwfA 356 4.64e+01 2c46A 241 4.73e+01 2of5A 114 4.89e+01 2bg9B 370 4.95e+01 1gq6A 313 4.99e+01 c.42.1.1 70341 2pzrA 324 5.12e+01 2pnfA 248 5.25e+01 2q0bA 324 5.29e+01 3e8xA 236 5.30e+01 2cevA 299 5.31e+01 1d3vA c.42.1.1 32576 2pvfA 334 5.32e+01 3hgoA 402 5.43e+01 3devA 320 5.50e+01 3l04A 359 5.57e+01 3brsA 289 5.60e+01 3kznA 359 5.63e+01 2pwlA 324 5.84e+01 1mb3A 124 5.88e+01 c.23.1.1 78907 2pg0A 385 5.92e+01 3l06A 359 5.95e+01 3fvqA 359 5.99e+01 2qgyA 391 6.02e+01 1fnoA 417 6.10e+01 d.58.19.1,c.56.5.4 70145,75841 2pz5A 324 6.31e+01 3l02A 359 6.32e+01 1yc5A 246 6.33e+01 c.31.1.5 122910 2pvyA 324 6.38e+01 3l05A 359 6.63e+01 2pzpA 324 6.74e+01 3fbvA 448 6.76e+01 3docA 335 6.84e+01 3ifqA 553 6.96e+01 2hsaA 402 7.23e+01 1zq1C 633 7.28e+01 a.182.1.2,d.74.4.1,d.128.1.5 125493,125494,125495 3f9lA 164 7.29e+01 2hs8A 402 7.31e+01 2j13A 247 7.34e+01 c.6.2.3 137934 1vkmA 297 7.34e+01 c.138.1.1 108670 2o71A 115 7.37e+01 1ihmA 530 7.42e+01 1ihmA b.121.4.3 62385 1x99A 145 7.45e+01 b.97.1.2 114978 3n0lA 417 7.70e+01 1oecA 316 7.75e+01 d.144.1.7 111630 3evgA 275 7.81e+01 2psqA 370 7.85e+01 d.144.1.7 149827 2qv2A 342 7.89e+01