# List of top-scoring protein chains for t04-100-30-CB_burial_14_7-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.soe.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1jwqA 179 8.24e-28 c.56.5.6 90921 1xovA 326 2.13e-13 b.34.11.4,c.56.5.6 122206,122207 3czxA 182 1.20e-12 3k2kA 403 2.76e-02 1cf9A 753 5.98e-01 1cf9A c.23.16.3,e.5.1.1 31441,42815 1vl0A 292 6.37e-01 c.2.1.2 108704 1p80A 753 6.97e-01 c.23.16.3,e.5.1.1 94337,94338 2nacA 393 8.51e-01 2nadA c.2.1.4,c.23.12.1 30088,31348 1m6yA 301 1.24e+00 a.60.13.1,c.66.1.23 78716,78717 1mb3A 124 1.25e+00 c.23.1.1 78907 1h7eA 245 1.53e+00 c.68.1.13 60717 2c1cA 312 1.62e+00 c.56.5.1 129630 3he8A 149 1.71e+00 3l2nA 395 1.81e+00 1a04A 215 2.04e+00 1a04A a.4.6.2,c.23.1.1 16234,31089 3mbfA 342 2.29e+00 2bw0A 329 2.61e+00 b.46.1.1,c.65.1.1 129303,129304 3m1rA 322 2.74e+00 3mbdA 342 2.78e+00 2vhaA 287 2.80e+00 3devA 320 2.82e+00 2ef5A 290 3.33e+00 2ia4A 287 3.83e+00 1wuaA 375 4.20e+00 c.55.1.1,c.55.1.1 121281,121282 3l6uA 293 4.25e+00 2zbtA 297 4.50e+00 3b98A 475 4.57e+00 2fxuA 375 4.70e+00 c.55.1.1,c.55.1.1 134340,134341 3kljA 385 5.45e+00 2jepA 395 5.54e+00 8abp 306 5.61e+00 8abp 8abpA 306 5.61e+00 c.93.1.1 35647 2yvuA 186 6.17e+00 2w49D 372 6.33e+00 2e3zA 465 6.38e+00 2rfwA 430 6.57e+00 1vmeA 410 6.79e+00 c.23.5.1,d.157.1.3 108893,108894 3h16A 154 7.28e+00 1mvoA 136 7.58e+00 c.23.1.1 79513 1qz5A 375 7.65e+00 c.55.1.1,c.55.1.1 96614,96615 2yzrA 330 7.81e+00 2qs9A 194 8.63e+00 1pda 315 8.78e+00 1pda 2ywxA 157 8.86e+00 1s3iA 310 9.39e+00 b.46.1.1,c.65.1.1 98435,98436 2booA 247 9.45e+00 3imfA 257 1.05e+01 2fe7A 166 1.09e+01 d.108.1.1 133325 1yqeA 282 1.10e+01 c.56.7.1 123879 2id1A 130 1.13e+01 d.218.1.12 147622 3gr7A 340 1.18e+01 2pd6A 264 1.25e+01 1uedA 406 1.27e+01 a.104.1.1 99256 1e4iA 447 1.42e+01 1e70M c.1.8.4 59225 2ccjA 205 1.42e+01 1uhvA 500 1.43e+01 b.71.1.2,c.1.8.3 99402,99403 1wyuA 438 1.48e+01 c.67.1.7 121452 1k2yX 463 1.52e+01 c.84.1.1,c.84.1.1,c.84.1.1,d.129.2.1 68063,68064,68065,68066 1vk4A 298 1.54e+01 c.72.1.1 100850 2extA 77 1.62e+01 b.82.5.1 132563 2iswA 323 1.62e+01 1vjzA 341 1.76e+01 c.1.8.3 100838 1j6wA 175 1.80e+01 1j98A d.185.1.2 62663 3l12A 313 1.83e+01 1wod 233 1.85e+01 1wod 2qx2A 344 1.88e+01 2yxbA 161 1.91e+01 2b5gA 171 1.92e+01 d.108.1.1 127892 3fg2P 404 1.94e+01 1wqaA 455 1.96e+01 2o9pA 454 1.97e+01 3c31A 258 1.98e+01 2f7lA 455 2.00e+01 1w24A 182 2.00e+01 d.159.1.7 120579 1amf 233 2.02e+01 1wod 1amfA 233 2.02e+01 c.94.1.1 35833 1noyA 388 2.04e+01 1clqA c.55.3.5 33713 1pjqA 457 2.05e+01 c.2.1.11,c.90.1.1,e.37.1.1 94766,94767,94768 1ea9C 583 2.09e+01 b.1.18.2,b.71.1.1,c.1.8.1 70087,70088,70089 3ck2A 176 2.10e+01 d.159.1.7 156724 3guxA 314 2.10e+01 3bl6A 230 2.16e+01 1o1xA 155 2.25e+01 c.121.1.1 86553 2gaiA 633 2.25e+01 1o97D 320 2.27e+01 c.26.2.3,c.31.1.2 81233,81234 3d26A 301 2.28e+01 2wj6A 276 2.29e+01 2z8uA 188 2.29e+01 1gtfA 74 2.31e+01 b.82.5.1 70460 3f6rA 148 2.36e+01 1e7sA 321 2.38e+01 1bsvA c.2.1.2 29806 2zwmA 130 2.42e+01 1o9gA 250 2.44e+01 c.66.1.29 86692 3ksuA 262 2.47e+01 2pgfA 371 2.47e+01 3dmnA 174 2.51e+01 3lwbA 373 2.51e+01 1ve9A 347 2.51e+01 c.4.1.2,d.16.1.3 100571,100572 1e7rA 321 2.53e+01 1bsvA c.2.1.2 29808 2qryA 330 2.62e+01 2w8tA 427 2.63e+01 2ddzA 190 2.65e+01 d.104.1.4 146486 2btfA 375 2.73e+01 1yagA c.55.1.1,c.55.1.1 33429,33430 2cb1A 412 2.74e+01 1v04A 355 2.79e+01 b.68.6.2 100240 2wmiA 606 2.82e+01 1vixA 420 2.82e+01 c.56.5.4,d.58.19.1 100777,100778 2wmkA 606 2.84e+01 2ww5A 468 2.87e+01 1mjhA 162 2.99e+01 1mjhA c.26.2.4 31639 1e6uA 321 3.00e+01 1bsvA c.2.1.2 29805 3ir1A 245 3.02e+01 1d4xA 375 3.04e+01 1yagA c.55.1.1,c.55.1.1 59107,59108 1wv2A 265 3.04e+01 c.1.31.1 114910 2b0aA 186 3.05e+01 c.8.8.1 127632 2wmiB 606 3.05e+01 2feaA 236 3.08e+01 c.108.1.20 133327 3g3eA 351 3.28e+01 1an9A 340 3.32e+01 1an9A c.4.1.2,d.16.1.3 30617,37904 3ctzA 623 3.38e+01 3gt7A 154 3.38e+01 2p4zA 284 3.39e+01 2zl7A 295 3.43e+01 3l49A 291 3.45e+01 1aj2 282 3.50e+01 1aj2 1aj2A 282 3.50e+01 c.1.21.1 29665 1t3gA 159 3.60e+01 1xfkA 336 3.61e+01 c.42.1.1 115264 1h5rA 293 3.61e+01 c.68.1.6 65623 1pmmA 466 3.62e+01 c.67.1.6 94901 2nooA 502 3.67e+01 2ragA 417 3.69e+01 2wkyA 258 3.74e+01 1kmkA 406 3.76e+01 c.67.1.3 68696 2gk4A 232 3.79e+01 2b99A 156 3.83e+01 1p5dX 463 3.89e+01 c.84.1.1,c.84.1.1,c.84.1.1,d.129.2.1 94138,94139,94140,94141 1tvnA 293 3.94e+01 c.1.8.3 119360 1g94A 448 3.96e+01 b.71.1.1,c.1.8.1 65169,65170 2jhqA 226 4.05e+01 2wm2A 279 4.10e+01 1womA 271 4.11e+01 1vqtA 213 4.11e+01 c.1.2.3 120417 3khiA 267 4.20e+01 3hc7A 254 4.22e+01 1zmrA 387 4.26e+01 2eklA 313 4.31e+01 3f6pA 120 4.32e+01 3a4mA 260 4.33e+01 1i1qB 192 4.35e+01 1qdlB c.23.16.1 61544 2brxA 244 4.41e+01 c.73.1.3 129028 1wapA 75 4.42e+01 1wapA b.82.5.1 28153 2pdoA 144 4.44e+01 2zjrG 174 4.45e+01 c.21.1.1 154560 1gq6A 313 4.45e+01 c.42.1.1 70341 2j0eA 266 4.48e+01 1euzA 419 4.49e+01 1k89 c.2.1.7,c.58.1.1 59513,59514 1c3wA 222 4.52e+01 1c3wA f.13.1.1 43405 1p3wA 404 4.54e+01 c.67.1.3 87752 3iupA 379 4.56e+01 3ld9A 223 4.56e+01 2zzcA 513 4.61e+01 3f4wA 211 4.67e+01 1s8nA 205 4.72e+01 c.23.1.1 105374 2qtwA 124 4.75e+01 1cg2A 393 4.77e+01 1cg2A c.56.5.4,d.58.19.1 33844,39360 2p41A 305 4.83e+01 c.66.1.25 149193 1vm6A 228 4.86e+01 d.81.1.3,c.2.1.3 108877,118631 1d2mA 665 4.87e+01 1d2mA c.37.1.19,c.37.1.19 32417,32418 1pnoA 180 4.88e+01 c.31.1.4 94953 1jf9A 408 5.07e+01 1c0nA c.67.1.3 62931 3bw2A 369 5.07e+01 1aop 497 5.13e+01 2aop 1aopA 497 5.13e+01 d.58.36.1,d.58.36.1,d.134.1.1,d.134.1.1 39501,39502,41425,41426 2jg2A 422 5.26e+01 3g9kD 323 5.27e+01 1jjfA 268 5.33e+01 c.69.1.2 66765 1z2lA 423 5.38e+01 c.56.5.4,d.58.19.1 124383,124384 3menA 362 5.40e+01 3h5lA 419 5.42e+01 2p5kA 64 5.55e+01 a.4.5.3 149249 1zj8A 566 5.56e+01 d.58.36.1,d.58.36.1,d.134.1.1,d.134.1.1 146003,146004,146005,146006 2fefA 294 5.65e+01 a.29.11.1,a.254.1.1 133343,133344 3b2yA 275 5.66e+01 2nvaA 372 5.69e+01 1p2fA 220 5.73e+01 a.4.6.1,c.23.1.1 87720,87721 2x42A 721 5.76e+01 2el9A 431 5.76e+01 c.51.1.1,d.104.1.1 146887,146888 1fnoA 417 5.77e+01 d.58.19.1,c.56.5.4 70145,75841 3iacA 473 5.77e+01 2xbnA 427 5.84e+01 2q4vA 170 5.88e+01 d.108.1.1 139878 2qorA 204 5.89e+01 1vgjA 184 5.89e+01 1edzA 320 5.90e+01 1ee9A c.2.1.7,c.58.1.2 30287,33935 2qr6A 393 5.93e+01 3c8iA 141 5.96e+01 1t7rA 269 5.97e+01 a.123.1.1 106635 3b2nA 133 5.99e+01 2vvnA 737 6.03e+01 a.246.1.1,c.1.8.10,d.92.2.3 153634,153635,153636 1t0qA 498 6.11e+01 a.25.1.2 106220 1jq5A 370 6.14e+01 e.22.1.2 67084 2zc8A 369 6.17e+01 1cs1A 386 6.21e+01 1ibjA c.67.1.3 34399 1yf3A 259 6.21e+01 c.66.1.28 123046 1c0pA 363 6.21e+01 1an9A c.4.1.2,d.16.1.3 30647,37934 2fldA 165 6.23e+01 3lvmA 423 6.32e+01 1xhnA 184 6.39e+01 b.45.1.1 122007 2pmwA 126 6.45e+01 1kmmA 424 6.47e+01 1adjA c.51.1.1,d.104.1.1 33174,40723 1o57A 291 6.50e+01 a.4.5.40,c.61.1.1 92483,92484 3co4A 312 6.50e+01 2x41A 721 6.53e+01 3d7lA 202 6.55e+01 1i0rA 169 6.61e+01 1i0rA b.45.1.2 61489 2a4aA 281 6.64e+01 c.1.10.1 126150 1smbA 154 6.70e+01 d.111.1.1 105756 2de0X 526 6.73e+01 2gk3A 256 6.74e+01 c.23.16.9 147123 4eugA 229 6.76e+01 3eugA c.18.1.1 31019 1vkmA 297 6.76e+01 c.138.1.1 108670 3a10A 116 6.80e+01 3fndA 312 6.88e+01 1iinA 292 6.90e+01 1g0rA c.68.1.6 62447 3d5hA 272 6.91e+01 1edg 380 6.92e+01 1edg 1edgA 380 6.92e+01 c.1.8.3 28807 1o4vA 183 6.95e+01 c.23.8.1 86628 3i3wA 443 6.95e+01 1gtkA 313 7.01e+01 c.94.1.1,d.50.2.1 76346,76347 2q4aA 330 7.01e+01 b.82.2.8 139839 2dkaA 544 7.04e+01 2de6A 392 7.06e+01 b.33.1.2,d.129.3.3 131415,131416 3kzgA 237 7.11e+01 1t3iA 420 7.12e+01 c.67.1.3 106354 3fa4A 302 7.16e+01 1phpA 394 7.19e+01 c.86.1.1 35452 2dgmA 466 7.21e+01 c.67.1.6 131508 2d0iA 333 7.23e+01 1ht6A 405 7.31e+01 b.71.1.1,c.1.8.1 83629,83630 3hs3A 277 7.32e+01 3abaA 403 7.34e+01 1ztcA 221 7.35e+01 d.157.1.11 125635 1z8oA 404 7.45e+01 a.104.1.1 124722 1x12A 208 7.46e+01 2nv2A 294 7.48e+01 1k8kA 418 7.55e+01 c.55.1.1,c.55.1.1 68305,68306 3b9eA 584 7.56e+01 2dgkA 452 7.56e+01 2v95A 371 7.65e+01 1fvpA 231 7.70e+01 1nfp c.1.16.2 29556 2choA 716 7.73e+01 a.246.1.1,c.1.8.10,d.92.2.3 130479,130480,130481 1bouB 302 7.74e+01 1bouB c.56.6.1 33859 2ra6A 166 7.75e+01 1eg5A 384 7.86e+01 1ecxA c.67.1.3 34429 3ct9A 356 7.90e+01