# List of template models which gave the target the best scores. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.soe.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Template_ID Template_Length Template_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 3czxA 183 6.606e-23 1jwqA 180 4.000e-19 c.56.5.6 90921 1xovA 316 1.351e-16 b.34.11.4 122206 c.56.5.6 122207 2ygsA 93 3.956e-02 1cy5A a.77.1.3 18431 1cy5A 93 1.147e-01 1cy5A a.77.1.3 18430 3ew7A 173 2.453e+00 2bkaA 232 2.714e+00 c.2.1.2 128666 1cwwA 103 2.863e+00 1cy5A a.77.1.3 18434 2j6gA 261 2.872e+00 1o88A 353 2.996e+00 b.80.1.1 81178 1fjgJ 99 3.929e+00 1fjfJ d.58.15.1 39330 2vxhA 229 4.044e+00 1d0nA 730 4.336e+00 1d0nA d.109.1.1 40834 d.109.1.1 40835 d.109.1.1 40836 d.109.1.1 40837 d.109.1.1 40838 d.109.1.1 40839 1p4xA 251 6.514e+00 a.4.5.28 87784 a.4.5.28 87785 1hxpA 341 6.532e+00 1guqA d.13.1.2 37530 d.13.1.2 37531 1guqA 348 7.410e+00 1guqA d.13.1.2 37522 d.13.1.2 37523 1vjzA 326 7.833e+00 c.1.8.3 100838 1azsC 340 8.525e+00 1cipA a.66.1.1 18203 c.37.1.8 32086 1nrjB 192 9.295e+00 c.37.1.8 86125 3gohA 298 9.580e+00 3hs5A 553 1.075e+01 3h2sA 217 1.119e+01 1qqp3 221 1.210e+01 1qqp3 2q4hA 312 1.303e+01 d.13.1.2 139853 d.13.1.2 139854 2gvkA 310 1.473e+01 d.58.4.14 135782 2o6nA 34 1.691e+01 k.17.1.1 148634 3ceuA 199 1.770e+01 2uubJ 99 1.774e+01 d.58.15.1 139941 1tggA 34 1.898e+01 k.17.1.1 112423 2vqiA 478 1.904e+01 2etdA 142 1.929e+01 a.29.9.1 132353 1ut8A 272 1.988e+01 a.60.7.1 99908 c.120.1.2 99909 2vqeJ 99 1.991e+01 d.58.15.1 153434 3dtzA 216 2.103e+01 2i87A 346 2.342e+01 3l4bC 217 2.403e+01 1tqyB 403 2.628e+01 c.95.1.1 107247 c.95.1.1 107248 2phjA 249 2.628e+01 2wqkA 249 2.877e+01 1zxmA 374 2.991e+01 1rp4A 375 3.013e+01 a.227.1.1 105027 1z91A 138 3.062e+01 a.4.5.28 124736 1t0tV 244 3.072e+01 d.58.4.10 106229 1lghB 44 3.103e+01 1lghB f.3.1.1 43734 1mw7A 221 3.164e+01 e.39.1.1 79557 3llvA 134 3.319e+01 1exnA 272 3.377e+01 1exnA a.60.7.1 18088 c.120.1.2 33358 2jepA 364 3.406e+01 1dx7A 49 3.419e+01 1dx7A f.3.1.1 43741 1p68A 103 3.599e+01 k.8.1.1 94158 2tpsA 227 3.642e+01 2tpsA c.1.3.1 28591 2gasA 308 3.704e+01 2bv6A 138 3.740e+01 a.4.5.28 146218