# List of top-scoring protein chains for t2k.w0.5 hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.soe.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1jwqA 179 3.15e-23 c.56.5.6 90921 1xovA 326 1.03e-06 b.34.11.4 122206 c.56.5.6 122207 3czxA 182 2.16e-06 3g7eA 203 3.72e-01 1kznA 205 3.74e-01 d.122.1.2 73373 1aj6A 219 4.56e-01 d.122.1.2 41106 1ei1A 391 5.60e-01 1aj6 d.14.1.3 37570 d.122.1.2 41104 2j69A 695 2.00e+00 1nt0A 286 2.53e+00 b.23.1.1 86143 b.23.1.1 86144 g.3.11.1 86145 3k9wA 170 3.35e+00 3ikzA 170 3.35e+00 1gvfA 286 4.11e+00 c.1.10.2 70599 3llcA 270 4.49e+00 2pg0A 385 4.95e+00 1ot8A 239 5.01e+00 d.211.1.1 93507 1m6sA 347 5.29e+00 c.67.1.1 78701 1jg8A 347 5.29e+00 1jg8A c.67.1.1 62946 2fm1A 355 5.49e+00 c.67.1.1 133756 1dlsA 186 5.51e+00 c.71.1.1 34906 1hfpA 186 5.52e+00 c.71.1.1 34904 1hfqA 186 5.52e+00 c.71.1.1 34903 1kmvA 186 5.53e+00 c.71.1.1 72757 3f8yA 187 5.53e+00 1dlrA 186 5.53e+00 c.71.1.1 34909 3fs6A 187 5.54e+00 1u71A 186 5.55e+00 3eigA 186 5.56e+00 1wtyA 119 6.27e+00 a.24.16.2 114880 2fblA 153 6.48e+00 d.63.1.2 133249 2jmpA 107 6.51e+00 2crlA 98 6.56e+00 3ghcA 186 7.46e+00 3f8zA 187 7.49e+00 3hngA 360 7.70e+00 1zgsA 447 9.72e+00 2ef5A 290 9.99e+00 2eivA 291 1.00e+01 2j9lA 185 1.01e+01 d.37.1.1 147943 3i1kA 377 1.03e+01 3f91A 187 1.05e+01 3ghvA 186 1.05e+01 3m1rA 322 1.11e+01 1j2vA 102 1.22e+01 d.58.5.2 90804 2ic4A 187 1.26e+01 3l12A 313 1.42e+01 1ukuA 102 1.42e+01 d.58.5.2 99533 1h7eA 245 1.44e+01 c.68.1.13 60717 3fcmA 197 1.45e+01 2uwnA 187 1.51e+01 3fbyA 551 1.58e+01 2g07A 297 1.68e+01 2g09A 297 1.68e+01 2bduA 297 1.68e+01 c.108.1.21 146135 1zba3 221 1.69e+01 2fvuA 222 1.71e+01 3jywU 116 1.72e+01 2fl7A 232 1.74e+01 2ebdA 309 1.77e+01 1s1iU 126 1.84e+01 i.1.1.1 105195 2dqwA 294 1.84e+01 2wwbL 127 1.85e+01 3e8xA 236 1.91e+01 2i1mA 333 2.03e+01 1p33A 289 2.04e+01 c.2.1.2 93966 3beaA 333 2.07e+01 2ogvA 317 2.09e+01 3h43A 85 2.17e+01 3lcdA 329 2.19e+01 2i0yA 335 2.19e+01 2vdxA 373 2.23e+01 2bj7A 138 2.23e+01 a.43.1.3 128608 d.58.18.4 128609 1xwiA 322 2.32e+01 2edgA 130 2.32e+01 3bshA 414 2.34e+01 3hqfA 181 2.42e+01 1ornA 226 2.45e+01 a.96.1.1 87342 2ax4A 198 2.47e+01 3bhwA 209 2.50e+01 2ragA 417 2.54e+01 2gb3A 409 2.54e+01 c.67.1.1 134903 2anrA 178 2.58e+01 2qpsA 405 2.63e+01 b.71.1.1 151207 c.1.8.1 151208 1rp9A 405 2.63e+01 b.71.1.1 118785 c.1.8.1 118786 1ht6A 405 2.63e+01 b.71.1.1 83629 c.1.8.1 83630 2qpuA 405 2.63e+01 b.71.1.1 151209 c.1.8.1 151210 3bsgA 414 2.64e+01 b.71.1.1 155525 c.1.8.1 155526 2hy1A 280 2.73e+01 d.159.1.11 147437 1nd4A 264 2.75e+01 d.144.1.6 91815 2zanA 444 2.84e+01 2hypA 280 2.89e+01 d.159.1.11 147459 2rcyA 262 2.94e+01 1uxoA 192 2.95e+01 c.69.1.31 108121 2jk0A 325 2.96e+01 2gvnA 327 2.96e+01 2ft3A 332 3.00e+01 1wriA 93 3.04e+01 d.15.4.1 114838 2ldxA 331 3.13e+01 c.2.1.5 30159 d.162.1.1 42126 1yloA 348 3.18e+01 b.49.3.1 123659 c.56.5.4 123660 1p59A 226 3.22e+01 a.96.1.1 87794 2nndA 178 3.22e+01 2pg6A 476 3.30e+01 2uyrX 306 3.31e+01 2pg7A 476 3.34e+01 2j01C 229 3.34e+01 e.24.1.1 137861 1pnuU 86 3.35e+01 i.1.1.1 88218 2fdvA 476 3.35e+01 3fdhA 499 3.36e+01 2zjrT 91 3.39e+01 b.84.4.1 154573 2pg5A 476 3.41e+01 3lxrF 192 3.48e+01 2ofxA 207 3.51e+01 2zl5A 295 3.53e+01 2ddrA 306 3.58e+01 d.151.1.3 131398 1wa3A 205 3.59e+01 c.1.10.1 120802 2zl7A 295 3.61e+01 1wsaA 330 3.63e+01 4pgaA c.88.1.1 35558 1i9sA 210 3.63e+01 1i9sA c.45.1.1 62099 1vlwA 217 3.64e+01 c.1.10.1 108868 3d26A 301 3.64e+01 3by2A 305 3.65e+01 1x99A 145 3.65e+01 b.97.1.2 114978 1mb3A 124 3.66e+01 c.23.1.1 78907 1tyyA 339 3.70e+01 c.72.1.1 112850 3by1A 313 3.70e+01 3ib7A 330 3.82e+01 1zmdA 474 3.96e+01 1ac6A 110 3.98e+01 1tcrA b.1.1.1 20606 1zy8A 474 3.98e+01 1qokA 282 3.98e+01 1f3rB b.1.1.1 20493 b.1.1.1 20492