PFRMAT SS
TARGET T0585
AUTHOR SAM-T02-server 
METHOD This file is the result of combining several RDB files, specifically
METHOD T0585.t2k.dssp-ebghstl.rdb  (weight 1.53986)
METHOD T0585.t2k.stride-ebghtl.rdb  (weight 1.24869)
METHOD T0585.t2k.str.rdb  (weight 1.53983)
METHOD These files were combined by translating their predictions into EHL
METHOD predictions with tables generated by compare-real, and then combining
METHOD those predictions with weights proportional to their mutual information
METHOD with the EHL alphabet.  The comments from the individual files follow.
METHOD
METHOD Comments from T0585.t2k.dssp-ebghstl.rdb
METHOD ============================================
METHOD TARGET T0585
METHOD Using neural net t2k-5740-IDaaHr-5-15-7-15-9-15-13-ebghstl-seeded.net
METHOD This is a 4-layer network, with 
METHOD	window	units
METHOD	    5	   15
METHOD	    7	   15
METHOD	    9	   15
METHOD	   13	    7 (1 EBGHSTL )
METHOD The input amino acid frequencies were determined from
METHOD alignment T0585.t2k-thin90.a2m.gz
METHOD with weighted counts, using HenikoffWeight(-1 bits/column, 1)
METHOD Counts were regularized to probabilities using
METHOD /projects/compbio/lib/recode3.20comp
METHOD Total sequence weight for alignment was 1109
METHOD
METHOD ============================================
METHOD Comments from T0585.t2k.stride-ebghtl.rdb
METHOD ============================================
METHOD TARGET T0585
METHOD Using neural net t2k-5651-IDaaHr-5-15-7-15-9-15-13-ebghtl-seeded.net
METHOD This is a 4-layer network, with 
METHOD	window	units
METHOD	    5	   15
METHOD	    7	   15
METHOD	    9	   15
METHOD	   13	    6 (1 EBGHTL )
METHOD The input amino acid frequencies were determined from
METHOD alignment T0585.t2k-thin90.a2m.gz
METHOD with weighted counts, using HenikoffWeight(-1 bits/column, 1)
METHOD Counts were regularized to probabilities using
METHOD /projects/compbio/lib/recode3.20comp
METHOD Total sequence weight for alignment was 1109
METHOD
METHOD ============================================
METHOD Comments from T0585.t2k.str.rdb
METHOD ============================================
METHOD TARGET T0585
METHOD Using neural net t2k-5651-IDaaHr-5-15-7-15-9-15-13-str-seeded.net
METHOD This is a 4-layer network, with 
METHOD	window	units
METHOD	    5	   15
METHOD	    7	   15
METHOD	    9	   15
METHOD	   13	   13 (1 str )
METHOD The input amino acid frequencies were determined from
METHOD alignment T0585.t2k-thin90.a2m.gz
METHOD with weighted counts, using HenikoffWeight(-1 bits/column, 1)
METHOD Counts were regularized to probabilities using
METHOD /projects/compbio/lib/recode3.20comp
METHOD Total sequence weight for alignment was 1109
METHOD
METHOD ============================================
MODEL 1
S C 0.87
N C 0.79
A C 0.77
S C 0.84
F C 0.77
R E 0.72
V E 0.93
V E 0.96
L E 0.95
D E 0.51
P C 0.85
G C 0.86
H C 0.85
G C 0.86
G C 0.79
I C 0.69
D C 0.72
G C 0.77
G C 0.81
A C 0.68
R E 0.50
G C 0.78
V C 0.91
T C 0.94
G C 0.86
I C 0.61
L E 0.63
E E 0.42
K H 0.50
D H 0.64
V H 0.88
T H 0.96
L H 0.97
A H 0.98
F H 0.98
A H 0.98
R H 0.98
A H 0.97
L H 0.97
R H 0.97
D H 0.97
E H 0.96
L H 0.95
Q H 0.85
K H 0.63
G C 0.79
S C 0.95
H C 0.97
T C 0.68
I E 0.88
V E 0.96
A E 0.97
L E 0.95
T E 0.79
R C 0.58
D C 0.87
S C 0.89
D C 0.84
I C 0.73
F C 0.65
L C 0.75
R C 0.88
L H 0.89
S H 0.93
E H 0.96
R H 0.97
V H 0.97
K H 0.96
K H 0.96
A H 0.96
Q H 0.92
E H 0.86
F H 0.53
D C 0.94
A C 0.97
D C 0.89
L E 0.95
F E 0.98
I E 0.98
S E 0.97
I E 0.85
H E 0.68
A C 0.50
D C 0.67
T C 0.78
I C 0.83
D C 0.87
V C 0.88
H C 0.80
S C 0.78
L C 0.71
R C 0.73
G C 0.61
A E 0.74
T E 0.94
V E 0.96
Y E 0.96
T E 0.92
I E 0.67
S C 0.81
D C 0.89
E C 0.80
A C 0.65
S C 0.60
D H 0.61
A H 0.81
I H 0.87
A H 0.92
K H 0.94
S H 0.95
L H 0.95
A H 0.94
E H 0.92
S H 0.88
E H 0.79
N H 0.68
K H 0.73
V H 0.75
D H 0.75
L H 0.75
L H 0.72
D C 0.50
G C 0.84
L C 0.82
P C 0.75
K C 0.73
E C 0.77
E C 0.81
S C 0.78
L C 0.76
E H 0.68
L H 0.87
T H 0.93
D H 0.94
I H 0.93
L H 0.94
L H 0.92
D H 0.89
L H 0.86
T H 0.85
R H 0.77
R H 0.72
E H 0.66
T H 0.64
H H 0.61
A H 0.76
F H 0.83
S H 0.85
I H 0.89
N H 0.95
F H 0.96
A H 0.97
N H 0.97
N H 0.97
V H 0.97
V H 0.97
S H 0.97
N H 0.96
L H 0.95
S H 0.94
K H 0.92
S H 0.86
H H 0.80
I C 0.54
N C 0.83
L C 0.81
I C 0.78
N C 0.75
N C 0.74
P C 0.71
H C 0.53
R C 0.48
Y C 0.52
A C 0.67
D C 0.72
F E 0.74
Q E 0.91
V E 0.93
L E 0.88
K E 0.68
A C 0.65
P C 0.86
D C 0.92
V C 0.90
P C 0.81
S E 0.78
V E 0.92
L E 0.94
I E 0.92
E E 0.87
I E 0.65
G E 0.47
Y C 0.49
L C 0.57
S C 0.81
N C 0.92
K H 0.87
E H 0.91
D H 0.94
E H 0.94
K H 0.90
L H 0.81
L H 0.56
N C 0.67
N C 0.94
P H 0.90
Q H 0.93
W H 0.96
R H 0.97
K H 0.97
Q H 0.97
M H 0.98
A H 0.98
A H 0.98
S H 0.98
I H 0.98
A H 0.98
Y H 0.97
S H 0.97
I H 0.98
R H 0.98
Q H 0.97
F H 0.97
A H 0.96
E H 0.87
Y H 0.63
R C 0.85
Q C 0.95
K C 0.88
I C 0.81
M C 0.77
Q C 0.70
P C 0.81
L C 0.98
END