# List of top-scoring protein chains for t2k.100-30-stride-ebghtl hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.soe.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1jwqA 179 4.89e-30 c.56.5.6 90921 3czxA 182 1.82e-09 1xovA 326 2.06e-09 b.34.11.4 122206 c.56.5.6 122207 2hjgA 436 2.80e-01 3f4cA 332 3.22e-01 2p41A 305 5.77e-01 c.66.1.25 149193 1xb2B 291 7.10e-01 a.5.2.2 115057 d.43.1.1 115058 d.43.1.1 115059 2p0sA 143 7.32e-01 c.94.1.3 149140 2vhlA 396 7.68e-01 3f4dA 332 7.73e-01 1h7eA 245 8.80e-01 c.68.1.13 60717 2oo3A 283 9.96e-01 c.66.1.59 148918 2fuvA 549 1.28e+00 1aua 296 1.35e+00 1aua 1auaA 296 1.35e+00 a.5.3.1 16290 c.13.1.1 30882 1mkyA 439 2.00e+00 c.37.1.8 79250 c.37.1.8 79251 d.52.5.1 79252 2qgqA 304 2.07e+00 1wqaA 455 2.11e+00 2o0bA 450 2.55e+00 1yqeA 282 2.88e+00 c.56.7.1 123879 1vk4A 298 2.96e+00 c.72.1.1 100850 3ip1A 404 3.40e+00 1mnaA 298 3.86e+00 c.69.1.22 79322 2dkjA 407 3.89e+00 3ialA 518 4.38e+00 2wa2A 276 4.69e+00 3dr3A 337 4.81e+00 1yrlA 491 5.03e+00 2wj6A 276 5.27e+00 2o8iA 165 5.34e+00 a.288.1.1 148676 1tcoA 375 5.35e+00 1auiA d.159.1.3 42084 2px2A 269 5.36e+00 1hp4A 512 5.96e+00 1hp4A c.1.8.6 61111 d.92.2.1 61112 1jakA 512 5.96e+00 c.1.8.6 66472 d.92.2.1 66473 2qs9A 194 6.03e+00 3evfA 277 6.20e+00 1d2eA 397 6.31e+00 1efcA b.43.3.1 25701 b.44.1.1 25741 c.37.1.8 32136 2hfkA 319 6.41e+00 3iprA 150 6.47e+00 1vkmA 297 6.53e+00 c.138.1.1 108670 1nktA 922 6.77e+00 a.162.1.1 85830 a.172.1.1 85831 c.37.1.19 85832 c.37.1.19 85833 2wm2A 279 7.01e+00 1vl0A 292 7.06e+00 c.2.1.2 108704 1bia 321 7.28e+00 1bia 1biaA 321 7.28e+00 a.4.5.1 16083 b.34.1.1 24447 d.104.1.2 40787 3gt7A 154 8.31e+00 1mb3A 124 8.42e+00 c.23.1.1 78907 3gxhA 157 9.26e+00 2qjjA 402 9.70e+00 2z67A 456 9.74e+00 c.67.1.9 154170 1efcA 393 1.00e+01 1efcA b.43.3.1 25680 b.44.1.1 25720 c.37.1.8 32113 2dqwA 294 1.04e+01 2bjbA 462 1.07e+01 3af5A 651 1.11e+01 2bvfA 459 1.12e+01 2wtmA 251 1.17e+01 3g8rA 350 1.17e+01 3ju7A 377 1.18e+01 1o7jA 327 1.20e+01 c.88.1.1 81140 1t5iA 172 1.23e+01 c.37.1.19 106450 3iusA 286 1.23e+01 2bd0A 244 1.33e+01 c.2.1.2 128321 1svvA 359 1.34e+01 c.67.1.1 106054 1aipA 405 1.34e+01 1efcA b.43.3.1 25697 b.44.1.1 25737 c.37.1.8 32132 3kdrA 310 1.35e+01 3menA 362 1.38e+01 1dz3A 130 1.39e+01 1dz3A c.23.1.1 31105 3l23A 303 1.39e+01 2f7lA 455 1.41e+01 1c14A 262 1.45e+01 1eny c.2.1.2 29927 1din 236 1.48e+01 1din 1uwkA 557 1.48e+01 e.51.1.1 108065 3h43A 85 1.55e+01 1iow 306 1.58e+01 1iow 1iowA 306 1.58e+01 c.30.1.2 31713 d.142.1.1 41481 1dusA 194 1.60e+01 1dusA c.66.1.4 34182 2ywxA 157 1.61e+01 1zi8A 236 1.62e+01 3gs6A 340 1.64e+01 3eyeA 168 1.68e+01 2wltA 332 1.75e+01 1uurA 473 1.84e+01 a.47.1.1 100016 b.2.5.5 100017 d.93.1.1 100018 2ax4A 198 1.86e+01 2ebbA 101 1.94e+01 1l8bA 190 1.95e+01 d.86.1.1 73683 1zk4A 251 1.96e+01 c.2.1.2 125176 3imfA 257 1.98e+01 3ksuA 262 1.99e+01 1tr9A 341 2.00e+01 c.1.8.7 112617 3cz5A 153 2.01e+01 1qapA 296 2.03e+01 1qpoA c.1.17.1 29559 d.41.2.1 38595 2pmwA 126 2.04e+01 3gedA 247 2.04e+01 1t6sA 162 2.06e+01 a.4.5.60 112271 a.4.5.60 112272 2dr1A 386 2.10e+01 2nacA 393 2.14e+01 2nadA c.2.1.4 30088 c.23.12.1 31348 1ej1A 190 2.19e+01 1ejhA d.86.1.1 40144 1dhr 241 2.20e+01 1dhr 1dhrA 241 2.20e+01 c.2.1.2 29832 2zw3A 226 2.20e+01 1vk1A 242 2.20e+01 d.268.1.2 108634 1ljrA 244 2.21e+01 1ljrA a.45.1.1 17707 c.47.1.5 33001 1g57A 217 2.22e+01 1g57A d.115.1.2 60253 1auiA 521 2.23e+01 1auiA d.159.1.3 42085 2wpvA 312 2.25e+01 3kb1A 262 2.29e+01 1efuA 385 2.33e+01 1efcA b.43.3.1 25682 b.44.1.1 25722 c.37.1.8 32115 1akaA 401 2.33e+01 1ajsA c.67.1.1 34258 3c0fB 91 2.35e+01 2wvgA 568 2.37e+01 1fvpA 231 2.37e+01 1nfp c.1.16.2 29556 1r9jA 673 2.39e+01 c.36.1.6 111722 c.36.1.10 111723 c.48.1.1 111724 1gxsB 158 2.42e+01 1ajsA 412 2.44e+01 1ajsA c.67.1.1 34276 3i4kA 383 2.44e+01 1wdaA 670 2.46e+01 b.2.9.1 109243 b.6.1.6 109244 d.126.1.5 109245 3k2kA 403 2.49e+01 1eqcA 394 2.52e+01 1cz1A c.1.8.3 28811 1qw9A 502 2.53e+01 b.71.1.2 96466 c.1.8.3 96467 2wyhA 923 2.58e+01 3g89A 249 2.58e+01 1h5wA 309 2.58e+01 e.27.1.1 65635 2pc8A 400 2.61e+01 1cz1A 394 2.61e+01 1cz1A c.1.8.3 28839 1xi9A 406 2.64e+01 c.67.1.1 115355 1httA 423 2.68e+01 1adjA c.51.1.1 33178 d.104.1.1 40727 3cniA 156 2.71e+01 2yvuA 186 2.72e+01 2oxnA 340 2.73e+01 2d51A 406 2.74e+01 3ih1A 305 2.75e+01 2dexX 671 2.77e+01 b.2.9.1 131436 b.6.1.6 131437 d.126.1.5 131438 1sbyA 254 2.81e+01 c.2.1.2 118930 1l5xA 280 2.82e+01 c.106.1.1 77718 2rjoA 332 2.83e+01 2yw2A 424 2.83e+01 3mdqA 315 2.83e+01 1x9dA 538 2.83e+01 a.102.2.1 121810 2jvfA 96 2.84e+01 k.41.1.1 148223 1whsB 153 2.84e+01 1whtB 2dg5A 366 2.85e+01 d.153.1.6 131500 2p67A 341 2.86e+01 c.37.1.10 149269 3e8xA 236 2.86e+01 1iirA 415 2.86e+01 1iirA c.87.1.5 62453 1rm6A 769 2.89e+01 d.41.1.1 111872 d.133.1.1 111873 1mo9A 523 2.90e+01 c.3.1.5 79341 c.3.1.5 79342 d.87.1.1 79343 1bcsB 160 2.95e+01 1whtB 1b16A 254 2.97e+01 1b16A c.2.1.2 29875 2o7iA 592 2.99e+01 1jg8A 347 2.99e+01 1jg8A c.67.1.1 62946 1m6sA 347 2.99e+01 c.67.1.1 78701 3g9kD 323 3.03e+01 1mvoA 136 3.04e+01 c.23.1.1 79513 1k8yB 396 3.05e+01 c.79.1.1 72184 3bn1A 373 3.18e+01 2qtwA 124 3.22e+01 3fv9A 386 3.24e+01 1qsgA 265 3.25e+01 1eny c.2.1.2 29935 1u53A 196 3.27e+01 3dr7A 391 3.28e+01 7aatA 401 3.32e+01 1ajsA c.67.1.1 34250 2oy0A 262 3.37e+01 1c7gA 456 3.37e+01 c.67.1.2 90415 2ztuA 260 3.39e+01 1cvjA 190 3.39e+01 1cvjB d.58.7.1 39191 d.58.7.1 39192 3g65A 296 3.40e+01 2eayA 233 3.41e+01 3lvuA 258 3.43e+01 1ltqA 301 3.46e+01 c.108.1.9 78208 c.37.1.1 78209 1f2hA 169 3.52e+01 1f3vA d.58.22.1 59612 1e19A 314 3.53e+01 1b7bA c.73.1.1 34967 1ipcA 217 3.53e+01 d.86.1.1 71257 2icsA 379 3.53e+01 b.92.1.8 137241 c.1.9.14 137242 2r14A 377 3.55e+01 1mkmA 249 3.59e+01 a.4.5.33 79242 d.110.2.2 79243 1vqvA 306 3.60e+01 d.79.4.1 114024 d.139.1.1 114025 1w24A 182 3.61e+01 d.159.1.7 120579 3f6pA 120 3.64e+01 3jzmA 519 3.68e+01 1cg2A 393 3.69e+01 1cg2A c.56.5.4 33844 d.58.19.1 39360 1repC 251 3.70e+01 1repC a.4.5.10 16125 a.4.5.10 16126 1whtB 153 3.70e+01 1whtB 3jvpA 572 3.71e+01 1o6dA 163 3.72e+01 c.116.1.3 92567 3d26A 301 3.73e+01 2wfdA 252 3.79e+01 1svy 114 3.81e+01 1svy 1svyA 114 3.81e+01 d.109.1.1 40831 2wylA 360 3.83e+01 3l52A 284 3.85e+01 1uqwA 509 3.85e+01 c.94.1.1 99799 1yewC 289 3.87e+01 2yy8A 201 3.88e+01 1pwbA 177 3.88e+01 d.169.1.1 95212 h.1.1.1 95213 2nadA 393 3.88e+01 2nadA c.2.1.4 30090 c.23.12.1 31350 3h7fA 447 3.93e+01 3k09A 519 3.93e+01 3lotA 314 3.94e+01 2zwmA 130 3.96e+01 1exmA 405 3.98e+01 1efcA b.43.3.1 25696 b.44.1.1 25736 c.37.1.8 32131 2zc1A 333 3.99e+01 2obdA 476 4.00e+01 1qdlA 422 4.00e+01 1qdlA d.161.1.1 42088