# List of top-scoring protein chains for t2k.100-30-dssp-ebghstl hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.soe.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1jwqA 179 7.52e-31 c.56.5.6 90921 3czxA 182 7.33e-11 1xovA 326 1.43e-10 b.34.11.4 122206 c.56.5.6 122207 3f4cA 332 1.24e-01 1h7eA 245 1.76e-01 c.68.1.13 60717 3ialA 518 2.73e-01 1vkmA 297 3.32e-01 c.138.1.1 108670 3f4dA 332 4.29e-01 2qgqA 304 5.07e-01 2hjgA 436 5.77e-01 1xb2B 291 6.03e-01 a.5.2.2 115057 d.43.1.1 115058 d.43.1.1 115059 3ip1A 404 6.28e-01 1wqaA 455 6.48e-01 1iow 306 8.39e-01 1iow 1iowA 306 8.39e-01 c.30.1.2 31713 d.142.1.1 41481 1aua 296 8.59e-01 1aua 1auaA 296 8.59e-01 a.5.3.1 16290 c.13.1.1 30882 2bjbA 462 9.20e-01 1yhtA 367 1.04e+00 c.1.8.6 123213 3gt7A 154 1.11e+00 2p0sA 143 1.19e+00 c.94.1.3 149140 2ywxA 157 1.23e+00 1mb3A 124 1.25e+00 c.23.1.1 78907 2p41A 305 1.64e+00 c.66.1.25 149193 2j3mA 572 1.77e+00 2dkjA 407 1.86e+00 2dr1A 386 1.92e+00 1f48A 589 1.97e+00 1f48A c.37.1.10 32280 c.37.1.10 32281 2qs9A 194 2.05e+00 1jakA 512 2.14e+00 c.1.8.6 66472 d.92.2.1 66473 2o7iA 592 2.18e+00 3ksuA 262 2.25e+00 1hp4A 512 2.29e+00 1hp4A c.1.8.6 61111 d.92.2.1 61112 1wdaA 670 2.31e+00 b.2.9.1 109243 b.6.1.6 109244 d.126.1.5 109245 1vl0A 292 2.33e+00 c.2.1.2 108704 2fuvA 549 2.66e+00 1kczA 413 2.68e+00 c.1.11.2 68451 d.54.1.1 68452 3i4kA 383 2.71e+00 3k2kA 403 2.95e+00 1d2eA 397 3.04e+00 1efcA b.43.3.1 25701 b.44.1.1 25741 c.37.1.8 32136 2nadA 393 3.13e+00 2nadA c.2.1.4 30090 c.23.12.1 31350 1o7jA 327 3.22e+00 c.88.1.1 81140 2dexX 671 3.28e+00 b.2.9.1 131436 b.6.1.6 131437 d.126.1.5 131438 2vhlA 396 3.31e+00 3cniA 156 3.41e+00 1iirA 415 3.42e+00 1iirA c.87.1.5 62453 2nacA 393 3.43e+00 2nadA c.2.1.4 30088 c.23.12.1 31348 1m6sA 347 3.51e+00 c.67.1.1 78701 1jg8A 347 3.53e+00 1jg8A c.67.1.1 62946 1bcsB 160 3.66e+00 1whtB 3f6pA 120 3.74e+00 3lvuA 258 3.76e+00 3h7fA 447 3.86e+00 1gxsB 158 4.10e+00 2d8aA 348 4.13e+00 3gxhA 157 4.17e+00 1cs1A 386 4.17e+00 1ibjA c.67.1.3 34399 1whtB 153 4.32e+00 1whtB 1whsB 153 4.35e+00 1whtB 1xocA 520 4.40e+00 c.94.1.1 122201 3af5A 651 4.42e+00 1yqeA 282 4.52e+00 c.56.7.1 123879 3mbjA 291 4.52e+00 1t5iA 172 4.59e+00 c.37.1.19 106450 2voyI 128 4.63e+00 1uluA 261 4.68e+00 c.2.1.2 113292 2o0bA 450 4.68e+00 3ju7A 377 4.84e+00 1vjnA 220 5.23e+00 d.157.1.4 100825 2ay1A 394 5.31e+00 1ajsA c.67.1.1 34357 1y5mA 276 5.37e+00 c.2.1.2 122645 1ihuA 589 5.39e+00 c.37.1.10 62394 c.37.1.10 62395 2ax4A 198 5.40e+00 1vk4A 298 5.44e+00 c.72.1.1 100850 1httA 423 5.91e+00 1adjA c.51.1.1 33178 d.104.1.1 40727 2wltA 332 6.21e+00 1bia 321 6.35e+00 1bia 1biaA 321 6.35e+00 a.4.5.1 16083 b.34.1.1 24447 d.104.1.2 40787 1zk4A 251 6.65e+00 c.2.1.2 125176 3imfA 257 6.78e+00 2bvfA 459 7.27e+00 1xmxA 385 7.34e+00 c.52.1.26 115568 3g9kD 323 7.41e+00 1e3jA 352 7.51e+00 1e3jA b.35.1.2 24765 c.2.1.1 29781 1cg2A 393 7.59e+00 1cg2A c.56.5.4 33844 d.58.19.1 39360 2p67A 341 7.59e+00 c.37.1.10 149269 2el9A 431 7.80e+00 c.51.1.1 146887 d.104.1.1 146888 2dhoA 235 7.97e+00 2oo3A 283 8.04e+00 c.66.1.59 148918 1mkyA 439 8.13e+00 c.37.1.8 79250 c.37.1.8 79251 d.52.5.1 79252 1mvoA 136 8.48e+00 c.23.1.1 79513 3h43A 85 8.64e+00 2yxbA 161 8.64e+00 3dwgA 325 8.90e+00 2z67A 456 9.05e+00 c.67.1.9 154170 1x1tA 260 9.23e+00 c.2.1.2 121597 3ihlA 282 9.23e+00 2o8iA 165 9.26e+00 a.288.1.1 148676 3h7aA 252 9.59e+00 1aipA 405 9.69e+00 1efcA b.43.3.1 25697 b.44.1.1 25737 c.37.1.8 32132 2zw3A 226 9.74e+00 3iuuA 495 9.78e+00 3fxgA 455 9.80e+00 1squA 155 1.00e+01 d.252.1.1 98971 1tcoA 375 1.01e+01 1auiA d.159.1.3 42084 2nooA 502 1.03e+01 1qhhB 273 1.04e+01 1pjr 2zt5A 693 1.04e+01 3a2bA 398 1.05e+01 2eenA 183 1.07e+01 2o3aA 178 1.07e+01 c.116.1.8 148570 2f9dA 125 1.07e+01 d.58.7.1 133159 1ajsA 412 1.07e+01 1ajsA c.67.1.1 34276 2bd0A 244 1.08e+01 c.2.1.2 128321 3a1dA 287 1.09e+01 1akaA 401 1.09e+01 1ajsA c.67.1.1 34258 2qjjA 402 1.10e+01 7aatA 401 1.11e+01 1ajsA c.67.1.1 34250 2dqwA 294 1.12e+01 1ljrA 244 1.13e+01 1ljrA a.45.1.1 17707 c.47.1.5 33001 3ir1A 245 1.13e+01 1guqA 348 1.13e+01 1guqA d.13.1.2 37522 d.13.1.2 37523 1svvA 359 1.16e+01 c.67.1.1 106054 2b8eA 273 1.16e+01 c.108.1.7 128068 d.220.1.1 128069 3l52A 284 1.16e+01 2ez2A 456 1.17e+01 2wekA 341 1.20e+01 3dfhA 394 1.21e+01 1hc7A 477 1.22e+01 1hc7A c.51.1.1 60938 d.68.5.1 60940 d.104.1.1 60939 1nu5A 370 1.23e+01 c.1.11.2 92183 d.54.1.1 92184 1e19A 314 1.23e+01 1b7bA c.73.1.1 34967 3a1eA 287 1.23e+01 2wm2A 279 1.25e+01 2q3bA 313 1.25e+01 1kmmA 424 1.26e+01 1adjA c.51.1.1 33174 d.104.1.1 40723 3dr4A 391 1.28e+01 2ztuA 260 1.29e+01 1qsgA 265 1.29e+01 1eny c.2.1.2 29935 1uurA 473 1.30e+01 a.47.1.1 100016 b.2.5.5 100017 d.93.1.1 100018 3douA 191 1.31e+01 3dr3A 337 1.32e+01 1uqwA 509 1.35e+01 c.94.1.1 99799 2zwmA 130 1.35e+01 2pmwA 126 1.40e+01 1uxoA 192 1.40e+01 c.69.1.31 108121 1w24A 182 1.40e+01 d.159.1.7 120579 1kqfB 294 1.41e+01 d.58.1.5 75900 f.23.22.1 75901 2qtwA 124 1.43e+01 2c0cA 362 1.43e+01 2aeuA 374 1.46e+01 c.67.1.8 126646 2dg5A 366 1.46e+01 d.153.1.6 131500 2wj6A 276 1.47e+01 3k9wA 170 1.47e+01 1xhkA 187 1.48e+01 d.14.1.10 115299 1xi9A 406 1.50e+01 c.67.1.1 115355 3llcA 270 1.51e+01 3iusA 286 1.52e+01 3e03A 274 1.56e+01 3ikzA 170 1.56e+01 3mpoA 279 1.56e+01 3f6rA 148 1.57e+01 2wpvA 312 1.58e+01 1c14A 262 1.59e+01 1eny c.2.1.2 29927 2icjA 233 1.62e+01 3d3yA 425 1.63e+01 1qapA 296 1.66e+01 1qpoA c.1.17.1 29559 d.41.2.1 38595 1yaaA 412 1.66e+01 1ajsA c.67.1.1 34280 1j8yF 297 1.68e+01 1ng1 a.24.13.1 62747 c.37.1.10 62748 3hebA 152 1.70e+01 3fmcA 368 1.70e+01 1auiA 521 1.70e+01 1auiA d.159.1.3 42085 1mnaA 298 1.76e+01 c.69.1.22 79322 1wu7A 434 1.77e+01 c.51.1.1 121275 d.104.1.1 121276 2oa8A 233 1.81e+01 c.55.3.5 148693 2px2A 269 1.83e+01 3k0aA 519 1.84e+01 2f7lA 455 1.85e+01 1w85A 368 1.86e+01 c.36.1.11 114335 1cvjA 190 1.86e+01 1cvjB d.58.7.1 39191 d.58.7.1 39192 2v03A 303 1.86e+01 1dusA 194 1.87e+01 1dusA c.66.1.4 34182 3fbgA 346 1.89e+01 1tjcA 108 1.90e+01 a.118.8.1 112440 1pl8A 356 1.94e+01 b.35.1.2 94878 c.2.1.1 94879 3b4dA 96 1.98e+01 1j3mA 129 1.98e+01 d.129.7.1 103836 1dz3A 130 1.99e+01 1dz3A c.23.1.1 31105 1rc6A 261 2.01e+01 b.82.1.11 97287 3mdqA 315 2.01e+01 3g8rA 350 2.02e+01 1tplA 426 2.04e+01 1ax4A c.67.1.2 34387 3g89A 249 2.04e+01 3hv2A 153 2.07e+01 1esfA 233 2.07e+01 3seb b.40.2.2 25146 d.15.6.1 37735 1v95A 130 2.08e+01 c.51.1.1 108435 1s3eA 520 2.08e+01 c.3.1.2 98426 d.16.1.5 98427 3menA 362 2.09e+01 2wylA 360 2.10e+01 3k0cA 519 2.14e+01 2x8uA 412 2.16e+01 3a3pB 69 2.18e+01 3a3nB 67 2.18e+01 2kj8A 118 2.18e+01 1dyqA 234 2.19e+01 3seb b.40.2.2 59140 d.15.6.1 59141 2z30B 65 2.19e+01 3m2pA 311 2.20e+01 3e02A 311 2.20e+01 1qg6A 261 2.22e+01 1eny c.2.1.2 29919 3h0lB 478 2.23e+01 2wa2A 276 2.23e+01 3llvA 141 2.24e+01 3bn1A 373 2.25e+01 2ebbA 101 2.26e+01 3mbdA 342 2.26e+01 1xhcA 367 2.26e+01 c.3.1.5 115292 c.3.1.5 115293 d.87.1.1 115294 1rjwA 339 2.29e+01 b.35.1.2 97582 c.2.1.1 97583 2v5fA 104 2.30e+01 1c7gA 456 2.33e+01 c.67.1.2 90415 1u53A 196 2.34e+01 3iprA 150 2.34e+01 3e8xA 236 2.34e+01 2oegA 505 2.35e+01 2hqbA 296 2.36e+01 2q07A 306 2.36e+01 b.122.1.1 149981 c.18.1.4 149982 d.17.6.5 149983 2absA 383 2.37e+01 c.72.1.1 126534 3a3oB 64 2.37e+01 2d48A 129 2.38e+01 2qxyA 142 2.40e+01 2waxA 193 2.41e+01 1xv5A 401 2.42e+01 2amjA 204 2.42e+01 3mb7A 331 2.43e+01 1mo2A 294 2.43e+01 c.69.1.22 79331 1jmkC 230 2.45e+01 c.69.1.22 71747 2b99A 156 2.45e+01 1ak5 503 2.47e+01 1ak5 1hziA 129 2.48e+01 1rcb a.26.1.2 61449 1rcb 129 2.48e+01 1rcb 2ok8A 316 2.49e+01 2ccjA 205 2.51e+01 1vbiA 344 2.53e+01 1ulyA 192 2.53e+01 a.4.5.58 113297 1t6sA 162 2.53e+01 a.4.5.60 112271 a.4.5.60 112272 3gueA 484 2.53e+01 1dkuA 317 2.55e+01 1dkuA c.61.1.2 34118 c.61.1.2 34119 2p0iA 456 2.55e+01 3dr7A 391 2.58e+01 2f2aB 483 2.60e+01 a.182.1.2 132802 d.128.1.5 132803 3cz5A 153 2.60e+01 3l23A 303 2.64e+01 2i4rA 102 2.65e+01 c.149.1.1 147501 1o58A 303 2.66e+01 c.79.1.1 92491 2z43A 324 2.67e+01 3g8cA 444 2.67e+01 3gnhA 403 2.67e+01 1g5hA 454 2.68e+01 1g5hA c.51.1.1 60270 d.104.1.1 60271 3i4fA 264 2.68e+01 2choA 716 2.68e+01 a.246.1.1 130479 c.1.8.10 130480 d.92.2.3 130481 1g57A 217 2.69e+01 1g57A d.115.1.2 60253 2wyhA 923 2.69e+01 1pjr 724 2.72e+01 1pjr 1pjrA 724 2.72e+01 c.37.1.19 32391 c.37.1.19 32392 1j8mF 297 2.72e+01 1ng1 a.24.13.1 62742 c.37.1.10 62743 3dmqA 968 2.73e+01 2q5iA 691 2.74e+01 1zgzA 122 2.74e+01 c.23.1.1 125065 2khvA 106 2.75e+01 1a04A 215 2.77e+01 1a04A a.4.6.2 16234 c.23.1.1 31089 1x0tA 120 2.81e+01 3gedA 247 2.82e+01 2vvnA 737 2.82e+01 a.246.1.1 153634 c.1.8.10 153635 d.92.2.3 153636 2ztmA 260 2.83e+01 2ovlA 371 2.83e+01 3i3wA 443 2.84e+01 1cf2O 337 2.87e+01 1b7gO c.2.1.3 29994 d.81.1.1 39909 2aefA 234 2.87e+01 3he8A 149 2.87e+01 3htwA 328 2.91e+01 2zc1A 333 2.91e+01 3dahA 319 2.92e+01 3gbxA 420 2.95e+01 3fdkA 323 2.96e+01 3gu9A 331 2.98e+01 3evfA 277 2.99e+01 1vm6A 228 3.01e+01 c.2.1.3 118631 d.81.1.3 108877 2c78A 405 3.01e+01 b.43.3.1 130037 b.44.1.1 130038 c.37.1.8 130039 3lerA 301 3.01e+01 1x6vA 630 3.02e+01 b.122.1.3 121755 c.26.1.5 121756 c.37.1.4 121757 2gukA 120 3.02e+01 d.360.1.1 147182 3g8qA 278 3.03e+01 1z57A 339 3.04e+01 1dd9A 338 3.05e+01 1dd9A e.13.1.1 43254 1sur 215 3.06e+01 1sur 1surA 215 3.06e+01 c.26.2.2 31620 3bmxA 642 3.07e+01 3lufA 259 3.09e+01 2jvfA 96 3.13e+01 k.41.1.1 148223 2pjrA 548 3.14e+01 1pjr c.37.1.19 32395 c.37.1.19 32396 1mjhA 162 3.20e+01 1mjhA c.26.2.4 31639 1vk1A 242 3.21e+01 d.268.1.2 108634 1exmA 405 3.24e+01 1efcA b.43.3.1 25696 b.44.1.1 25736 c.37.1.8 32131 1uanA 227 3.28e+01 c.134.1.1 99135 1zhvA 134 3.29e+01 d.58.18.8 125109 d.58.18.8 125110 1vj0A 380 3.29e+01 b.35.1.2 100786 c.2.1.1 100787 3hcwA 295 3.31e+01 2yvuA 186 3.32e+01 1hg5A 289 3.33e+01 1hg5A a.7.8.2 90360 a.118.9.3 90361 3jvpA 572 3.33e+01 2p8bA 369 3.35e+01 2pr8A 196 3.38e+01 2ocgA 254 3.39e+01 2omdA 154 3.39e+01 3d26A 301 3.42e+01 2cstA 411 3.43e+01 1ajsA c.67.1.1 34273 3dcyA 275 3.43e+01 1ble 163 3.44e+01 1ble 1svy 114 3.44e+01 1svy 1svyA 114 3.44e+01 d.109.1.1 40831 1nt0A 286 3.44e+01 b.23.1.1 86143 b.23.1.1 86144 g.3.11.1 86145 3l0yA 184 3.45e+01 1qdlB 195 3.45e+01 1qdlB c.23.16.1 31437 1om1A 332 3.45e+01 d.144.1.7 93347 2rjoA 332 3.51e+01 1ve1A 304 3.51e+01 c.79.1.1 120007 1a6aA 176 3.53e+01 1iakA b.1.1.2 21615 d.19.1.1 38189 3m5vA 301 3.54e+01 2hfkA 319 3.54e+01 3lgcA 89 3.55e+01 2dt8A 280 3.57e+01 2egzA 219 3.59e+01 1qwgA 251 3.59e+01 c.1.27.1 96473 3hbaA 334 3.61e+01 1ipcA 217 3.61e+01 d.86.1.1 71257 1vhnA 318 3.62e+01 c.1.4.1 100693 3chhA 336 3.62e+01 3ho8A 1150 3.62e+01 2fn9A 290 3.63e+01 1ac6A 110 3.64e+01 1tcrA b.1.1.1 20606 3gy1A 408 3.66e+01 2ze3A 275 3.67e+01 1s8nA 205 3.67e+01 c.23.1.1 105374 1mioA 534 3.68e+01 1qguA c.92.2.3 35601 3l0bA 184 3.68e+01 1db3A 372 3.69e+01 1db3A c.2.1.2 29813 2i4lA 458 3.71e+01 2pvrA 334 3.73e+01 d.144.1.7 149893 2prbA 196 3.75e+01 2pceA 386 3.76e+01 1uiuA 502 3.80e+01 c.94.1.1 99434 1ta0A 197 3.81e+01 c.108.1.16 106729 1nktA 922 3.82e+01 a.162.1.1 85830 a.172.1.1 85831 c.37.1.19 85832 c.37.1.19 85833 3bosA 242 3.84e+01 1zi8A 236 3.84e+01 2v36A 376 3.84e+01 3bjsA 428 3.85e+01 1dhr 241 3.88e+01 1dhr 1dhrA 241 3.88e+01 c.2.1.2 29832 1ypyA 184 3.88e+01 1up7A 417 3.88e+01 c.2.1.5 113374 d.162.1.2 113375 3c0fB 91 3.91e+01 2r14A 377 3.92e+01 3hguA 369 3.94e+01 1s2wA 295 3.97e+01 c.1.12.7 98407 1m2rA 327 3.97e+01 d.144.1.7 84760 3d6kA 422 3.98e+01 1lnqA 336 3.98e+01 c.2.1.9 111576 d.286.1.1 111577 f.14.1.1 74050 3l6fA 182 3.99e+01