# List of top-scoring protein chains for T0582.t2k-w0.5 hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://compbio.soe.ucsc.edu/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2z2sB	203	4.00e-10		
2q1zB	195	3.40e-09		
3ebrA	159	8.53e-05		
3cjxA	165	0.000159		
1vj2A	126	0.000177	b.82.1.10	100796
2o1qA	145	0.000401	b.82.1.21	148547
3ht1A	145	0.001074		
2f4pA	147	0.005843	b.82.1.9	132933
2uyaA	383	0.006143		
3balA	153	0.006655		
2v09A	385	0.007493		
2uy8A	385	0.007690		
1j58A	385	0.01073	b.82.1.2	71531
1o4tA	133	0.01081	b.82.1.9	86622
2uybA	385	0.01108		
2uy9A	385	0.01133		
3h8uA	125	0.03891		
2pfwA	116	0.06158		
2q30A	110	0.08648		
3h7jA	243	0.1290		
2h0vA	338	0.1782		
2qdrA	303	0.2126		
1y3tA	337	0.2146	b.82.1.5	122600
1lr5A	163	0.2642	b.82.1.2	74215
2et7A	201	0.2882	b.82.1.2	132352
2et1A	201	0.3190	b.82.1.2	132351
2eteA	201	0.3196	b.82.1.2	132354
3bu7A	394	0.3212	b.82.1.23	155593
3cewA	125	0.5660		
1sfnA	246	0.7773	b.82.1.11	105496
3l2hA	162	0.8652		
2o8qA	134	1.174		
1vr3A	191	1.247	b.82.1.6	120431
3d82A	102	1.290		
1yhfA	115	1.468	b.82.1.9	123176
1v70A	105	1.498	b.82.1.9	113555
1yfuA	174	1.929	b.82.1.20	123094
1tq5A	242	1.949	b.82.1.12	119311
1sq4A	278	2.047	b.82.1.11	98962
2gm6A	208	2.512	b.82.1.19	147130
3i7dA	163	4.075		
2i45A	107	4.224		
3es1A	172	4.643		
2wr8A	259	5.400		
1wu8A	256	5.477		
2pytA	133	7.464	b.82.1.24	149957
3lwcA	119	7.677		
2p17A	277	9.208		
3jv1A	182	10.19		
2vqaA	361	10.29		
3lagA	98	12.66		
3fjsA	114	13.41		
1rc6A	261	15.17	b.82.1.11	97287
2d40A	354	16.02	b.82.1.23	146454
2opkA	112	19.94		
3ibmA	167	21.24		
2fqpA	97	28.46		
2bnmA	198	28.63	a.35.1.3,b.82.1.10	128835,128836
1j1lA	290	32.17	b.82.1.12	90766
2x8uA	412	36.33		
1sefA	274	45.26	b.82.1.11	105452
3es4A	116	51.96		
3imfA	257	56.53		
2c78A	405	69.05	b.43.3.1,b.44.1.1,c.37.1.8	130037,130038,130039
1exmA	405	69.13	b.43.3.1,b.44.1.1,c.37.1.8	25696,25736,32131
2c77A	405	69.21	b.43.3.1,b.44.1.1,c.37.1.8	130034,130035,130036
2wrnZ	406	69.44		
1aipA	405	69.53	b.43.3.1,b.44.1.1,c.37.1.8	25697,25737,32132
1eftA	405	71.12	b.43.3.1,b.44.1.1,c.37.1.8	25688,25728,32123
1uijA	416	72.52	b.82.1.2,b.82.1.2	107866,107867
2ckkA	127	80.37		
2ozjA	114	81.60		
2zklA	369	81.95		
1b23P	405	82.28	b.43.3.1,b.44.1.1,c.37.1.8	25689,25729,32124
1xjaA	178	82.69	b.82.4.1	115382
2jgtA	422	84.01		
2jg2A	422	84.35		
2aacA	177	84.93	b.82.4.1	28150
2xbnA	427	87.59		
2w8uA	427	88.78		
2w8tA	427	89.05		
2arcA	164	89.23	b.82.4.1	28148
2w8vA	427	89.49