# List of top-scoring protein chains for t2k-w0.5-1-str4-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://compbio.soe.ucsc.edu/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2o1qA 145 1.43e-15 b.82.1.21 148547 2q1zB 195 8.76e-14 3ebrA 159 1.56e-13 3cjxA 165 1.11e-12 1vj2A 126 1.12e-07 b.82.1.10 100796 2pfwA 116 1.37e-07 3ht1A 145 8.57e-07 1v70A 105 1.13e-06 b.82.1.9 113555 1yhfA 115 2.70e-06 b.82.1.9 123176 3fjsA 114 3.87e-06 1y3tA 337 4.61e-06 b.82.1.5 122600 2h0vA 338 5.75e-06 2q30A 110 9.10e-06 1o4tA 133 9.40e-06 b.82.1.9 86622 3kgzA 156 1.01e-05 2gu9A 113 1.17e-05 3ibmA 167 1.19e-05 1sfnA 246 1.65e-05 b.82.1.11 105496 1lr5A 163 2.21e-05 b.82.1.2 74215 2ozjA 114 3.09e-05 2f4pA 147 5.38e-05 b.82.1.9 132933 1sefA 274 7.03e-05 b.82.1.11 105452 3lagA 98 9.47e-05 3h7jA 243 0.000103 1tq5A 242 0.000134 b.82.1.12 119311 1rc6A 261 0.000137 b.82.1.11 97287 3d82A 102 0.000148 3l2hA 162 0.000167 2b8mA 117 0.000205 b.82.1.18 128092 2gc1A 188 0.000235 b.82.1.7 134928 3h8uA 125 0.000361 2vecA 256 0.000451 1qxrA 189 0.000545 b.82.1.7 96552 3es1A 172 0.000558 1x82A 190 0.000775 b.82.1.7 114955 2et1A 201 0.001030 b.82.1.2 132351 2qdrA 303 0.001084 1y9qA 192 0.001148 a.35.1.8,b.82.1.15 116592,116593 2p17A 277 0.001151 2vqaA 361 0.001476 2oziA 98 0.001617 2o8qA 134 0.001899 2oa2A 148 0.002059 2fqpA 97 0.002385 2d40A 354 0.002924 b.82.1.23 146454 1juhA 350 0.002973 b.82.1.5 71884 2i45A 107 0.005297 1fi2A 201 0.005713 b.82.1.2 59845 3cewA 125 0.005824 3i7dA 163 0.007112 1j1lA 290 0.007747 b.82.1.12 90766 1zvfA 176 0.02657 b.82.1.20 146029 2pytA 133 0.02957 b.82.1.24 149957 2d5fA 493 0.03108 2gm6A 208 0.03315 b.82.1.19 147130 3lwcA 119 0.03583 3gbgA 276 0.04779 1j58A 385 0.05855 b.82.1.2 71531 2bnmA 198 0.07248 a.35.1.3,b.82.1.10 128835,128836 2phlA 397 0.07388 b.82.1.2,b.82.1.2 28082,28083 1od5A 492 0.07580 b.82.1.2,b.82.1.2 86832,86833 2phdA 368 0.08023 b.82.1.23 149468 3fz3A 531 0.1191 2qnkA 286 0.1370 3c3vA 510 0.1617 1cauA 181 0.2895 b.82.1.2 28102 1dgwA 178 0.4123 b.82.1.2 28090 1yfuA 174 0.4130 b.82.1.20 123094 2ea7A 434 0.4245 2e9qA 459 0.6142 2cavA 445 0.7129 b.82.1.2,b.82.1.2 28094,28095 1vr3A 191 0.7194 b.82.1.6 120431 1xjaA 178 0.7964 b.82.4.1 115382 2atfA 200 1.052 b.82.1.19 127290 3es4A 116 1.070 3elnA 200 1.243 b.82.1.19 158185 2b5hA 200 1.497 b.82.1.19 127894 1fxzA 476 1.907 b.82.1.2,b.82.1.2 65059,65060 3bcwA 123 2.677 2zklA 369 2.725 1cauB 184 6.382 b.82.1.2 28103 1e5rA 290 7.570 b.82.2.4 59276 1o5uA 101 10.14 b.82.1.8 92518 3eqeA 171 11.04 1q3eA 207 13.05 b.82.3.2 95669 2opkA 112 14.09 3i7uA 134 16.24 2wfpA 394 16.73 1q90A 292 18.75 b.2.6.1,b.84.2.2,f.23.23.1 96238,96239,96240 2ptmA 198 26.26 3bpzA 202 28.51 3km5A 180 31.10 3gdcA 288 32.20 3l0yA 184 33.64 1wgpA 137 34.66 b.82.3.2 114619 1giqA 413 35.00 d.166.1.1,d.166.1.1 76224,76225 1widA 130 35.33 b.142.1.2 114667 1caxB 184 37.37 b.82.1.2 28105 3h1wA 393 37.81 1zrrA 179 38.11 b.82.1.6 125555 1dgwX 79 38.69 b.82.1.2 28091 3d8cA 349 38.87 2ci9A 102 39.84 1krhA 338 40.49 b.43.4.2,c.25.1.2,d.15.4.2 72891,72892,72893 3hqxA 111 40.84 1f1uA 323 41.40 d.32.1.3,d.32.1.3 83200,83201 3l0bA 184 41.66 1aqt 138 41.73 1pmiA 440 42.42 b.82.1.3 28114 1zx5A 300 43.09 b.82.1.3 125763 1vavA 222 47.98 b.29.1.18 108472 3lzfL 217 48.03 1vqvA 306 48.31 d.79.4.1,d.139.1.1 114024,114025 1tzlA 622 51.13 c.3.1.2,d.16.1.1 112876,112877 1ujxA 119 51.29 b.26.1.2 99473 4pazA 123 51.53 b.6.1.1 22881 2arcA 164 63.25 b.82.4.1 28148 1vrbA 342 65.38 b.82.2.11 120450 2d93A 134 65.38 3fmcA 368 66.68 2cohA 202 67.11 a.4.5.4,b.82.3.2 130677,130678 2awaA 390 71.99 3bpuA 88 72.93 1ka6A 128 74.41 d.93.1.1 68370 1qgxA 357 78.11 e.7.1.1 42973 1mzeA 351 79.40 b.82.2.6 79694 1ntnA 72 85.95 g.7.1.1 44414 8fabA 212 88.98 b.1.1.1,b.1.1.2 19772,20882