# List of top-scoring protein chains for t2k-w0.5-1-pb-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://compbio.soe.ucsc.edu/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2o1qA 145 1.21e-17 b.82.1.21 148547 2q1zB 195 1.25e-15 3ebrA 159 2.97e-15 3cjxA 165 3.36e-15 1vj2A 126 1.71e-09 b.82.1.10 100796 2pfwA 116 3.19e-09 3ht1A 145 3.61e-08 1v70A 105 5.47e-08 b.82.1.9 113555 1y3tA 337 1.83e-07 b.82.1.5 122600 3ibmA 167 2.75e-07 1yhfA 115 2.91e-07 b.82.1.9 123176 3fjsA 114 3.81e-07 2h0vA 338 4.18e-07 3kgzA 156 4.37e-07 1o4tA 133 4.89e-07 b.82.1.9 86622 2f4pA 147 5.93e-07 b.82.1.9 132933 1sfnA 246 7.21e-07 b.82.1.11 105496 3h7jA 243 9.51e-07 2q30A 110 1.06e-06 1lr5A 163 1.39e-06 b.82.1.2 74215 1sefA 274 2.53e-06 b.82.1.11 105452 1rc6A 261 4.23e-06 b.82.1.11 97287 1tq5A 242 4.43e-06 b.82.1.12 119311 2gu9A 113 4.47e-06 3l2hA 162 6.51e-06 3h8uA 125 1.08e-05 2b8mA 117 1.59e-05 b.82.1.18 128092 3lagA 98 1.71e-05 2ozjA 114 1.95e-05 2gc1A 188 2.18e-05 b.82.1.7 134928 2vqaA 361 3.42e-05 3d82A 102 3.63e-05 2et1A 201 3.84e-05 b.82.1.2 132351 1y9qA 192 4.09e-05 a.35.1.8,b.82.1.15 116592,116593 3es1A 172 4.13e-05 1qxrA 189 5.23e-05 b.82.1.7 96552 1j1lA 290 5.83e-05 b.82.1.12 90766 2qdrA 303 8.78e-05 1x82A 190 0.000121 b.82.1.7 114955 2p17A 277 0.000159 2oziA 98 0.000166 1fi2A 201 0.000171 b.82.1.2 59845 2vecA 256 0.000191 2fqpA 97 0.000270 2d40A 354 0.000272 b.82.1.23 146454 1juhA 350 0.000402 b.82.1.5 71884 2oa2A 148 0.000433 2o8qA 134 0.000521 3cewA 125 0.000848 2i45A 107 0.000854 2d5fA 493 0.000905 3i7dA 163 0.001262 1od5A 492 0.001463 b.82.1.2,b.82.1.2 86832,86833 1j58A 385 0.002458 b.82.1.2 71531 2phdA 368 0.002868 b.82.1.23 149468 3gbgA 276 0.005515 3fz3A 531 0.005927 3c3vA 510 0.007880 1cauA 181 0.01110 b.82.1.2 28102 1zvfA 176 0.01349 b.82.1.20 146029 3lwcA 119 0.01549 2gm6A 208 0.01563 b.82.1.19 147130 2bnmA 198 0.01814 a.35.1.3,b.82.1.10 128835,128836 2qnkA 286 0.02046 2pytA 133 0.02354 b.82.1.24 149957 2e9qA 459 0.03053 1dgwA 178 0.03302 b.82.1.2 28090 2ea7A 434 0.03400 2cavA 445 0.04408 b.82.1.2,b.82.1.2 28094,28095 2phlA 397 0.05038 b.82.1.2,b.82.1.2 28082,28083 1fxzA 476 0.05298 b.82.1.2,b.82.1.2 65059,65060 1xjaA 178 0.1264 b.82.4.1 115382 1vr3A 191 0.1709 b.82.1.6 120431 2atfA 200 0.1826 b.82.1.19 127290 1yfuA 174 0.2536 b.82.1.20 123094 3elnA 200 0.3171 b.82.1.19 158185 2b5hA 200 0.4203 b.82.1.19 127894 1cauB 184 0.7892 b.82.1.2 28103 3bcwA 123 1.471 3es4A 116 1.620 1e5rA 290 1.628 b.82.2.4 59276 2arcA 164 1.836 b.82.4.1 28148 2opkA 112 1.948 1o5uA 101 2.355 b.82.1.8 92518 1q90A 292 3.124 b.2.6.1,b.84.2.2,f.23.23.1 96238,96239,96240 1q3eA 207 3.311 b.82.3.2 95669 1qwrA 319 3.597 b.82.1.3 96491 4pazA 123 3.612 b.6.1.1 22881 1dgwX 79 4.127 b.82.1.2 28091 3eqeA 171 4.257 1caxB 184 6.116 b.82.1.2 28105 1lci 550 6.203 3d8cA 349 6.451 1wgpA 137 6.637 b.82.3.2 114619 1c3gA 170 6.646 b.4.1.1,b.4.1.1 22831,22832 2zklA 369 7.873 1krhA 338 7.927 b.43.4.2,c.25.1.2,d.15.4.2 72891,72892,72893 1pmyA 123 8.000 b.6.1.1 22888 1widA 130 10.05 b.142.1.2 114667 1mzeA 351 10.68 b.82.2.6 79694 3hqxA 111 11.53 2ptmA 198 12.23 1py0A 125 12.71 b.6.1.1 111645 3eg4A 304 13.89 2qc5A 300 14.30 1qgxA 357 14.31 e.7.1.1 42973 2zfhA 179 14.31 d.58.5.2 154408 1vrbA 342 14.32 b.82.2.11 120450 2rijA 387 16.23 2wlgA 215 16.65 1giqA 413 20.11 d.166.1.1,d.166.1.1 76224,76225 1ka6A 128 20.97 d.93.1.1 68370 2d93A 134 21.03 1aqt 138 21.50 3erxA 123 21.80 2d1sA 548 23.56 1pazA 123 24.91 b.6.1.1 22878 2wfpA 394 25.36 1ci3M 249 28.35 b.2.6.1,b.84.2.2 22480,28266 2ywlA 180 28.98 3bpuA 88 29.17 1e8nA 710 29.77 b.69.7.1,c.69.1.4 27675,34643 1tzlA 622 29.97 c.3.1.2,d.16.1.1 112876,112877 1uaiA 224 30.98 b.29.1.18 107761 1h2kA 349 31.34 b.82.2.6 76572 3ivmA 693 31.90 1j2lA 70 32.01 g.20.1.1 90787 1ln1A 214 32.70 d.129.3.2 74038 3e97A 231 33.14 1jysA 242 34.19 c.56.2.1 77216 2aj7A 163 35.36 b.158.1.1 126842 2rczA 81 35.92 2z2nA 299 36.88 3lzfL 217 37.05 3elsA 158 37.15 1aac 105 37.94 3fsyA 332 38.33 1z90A 469 39.17 b.81.1.4,c.68.1.5 124732,124733 3e53A 480 39.27 1kwaA 88 40.29 b.36.1.1 24772 3fmcA 368 40.87 1grj 158 41.51 3bpzA 202 41.82 1pmiA 440 43.13 b.82.1.3 28114 3km5A 180 44.00 3holA 509 44.21 1dekA 241 44.44 c.37.1.1 31842 3fceA 512 44.80 1qavB 115 44.97 b.36.1.1 24780 2kk4A 95 47.14 1ujxA 119 48.54 b.26.1.2 99473 1fr7A 260 48.87 b.74.1.1 27828 1naqA 112 49.37 d.58.5.2 91761 1oscA 126 49.57 d.58.5.2 93490 2oizD 135 49.59 1pg4A 652 50.57 e.23.1.1 88067 1e2wA 251 50.94 b.2.6.1,b.84.2.2 22466,28252 3lgfA 125 51.61 1zx5A 300 51.63 b.82.1.3 125763 1h2xA 710 52.03 b.69.7.1,c.69.1.4 76598,76599 1xqwA 293 52.74 1xxqA 161 53.44 3h1wA 393 53.48 1be9A 119 54.40 b.36.1.1 24774 1yo1A 260 55.28 1fs0E 138 55.59 a.2.10.1,b.93.1.1 59997,59998 3bqwA 351 55.75 2wff2 230 56.65 1mmuA 347 57.46 b.30.5.4 79303 2jkdA 187 57.56 3dhvA 512 57.56 1hcz 252 57.69 1vq0A 302 58.53 d.193.1.1,g.81.1.1 114000,114001 1dzrA 183 58.92 b.82.1.1 28076 1bqkA 124 60.17 b.6.1.1 22889 2oizA 361 61.21 1f1uA 323 61.99 d.32.1.3,d.32.1.3 83200,83201 3g7sA 549 62.12 1t5hX 504 63.22 e.23.1.1 106449 1w18A 493 63.95 2aukA 190 64.77 1z0nA 96 65.22 b.1.18.21 145955 3l0yA 184 66.05 3gdcA 288 66.86 1keqA 248 67.20 b.74.1.1 72387 3ii1A 535 67.76 1pdr 99 68.93 2agyD 135 68.95 3e7wA 511 69.21 1v25A 541 69.90 e.23.1.1 108275 2cohA 202 70.06 a.4.5.4,b.82.3.2 130677,130678 2bcgG 453 70.43 c.3.1.3,c.3.1.3,d.16.1.6 128282,128283,128284 1vavA 222 71.07 b.29.1.18 108472 3ejkA 174 71.23 2buwB 241 71.95 b.3.6.1 145016 1byfA 125 72.51 d.169.1.1 42419 3cbxA 105 73.51 2bklA 695 73.75 3l4mC 137 74.16 1xfdA 723 75.21 b.70.3.1,c.69.1.24 115251,115252 1ryjA 70 75.32 d.15.3.2 98104 2hfxA 260 75.42 3ef4A 124 76.63 3ia8A 163 76.68 1l6oA 95 77.61 b.36.1.1 84534 3kh6A 199 77.73 2cw8A 537 78.78 2bsyA 278 81.16 b.85.4.1,b.85.4.1 129129,129130 1vqvA 306 81.67 d.79.4.1,d.139.1.1 114024,114025 3ceaA 346 82.59 2f15A 96 83.85 b.1.18.21 146993 1ep0A 185 85.46 b.82.1.1 28080 3cbzA 108 87.12 3iplA 501 87.41