# List of top-scoring protein chains for t2k-w0.5-1-o_sep-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://compbio.soe.ucsc.edu/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2o1qA 145 4.49e-16 b.82.1.21 148547 2q1zB 195 1.70e-14 3ebrA 159 1.95e-14 3cjxA 165 2.66e-13 1vj2A 126 4.70e-08 b.82.1.10 100796 2pfwA 116 9.32e-08 1v70A 105 1.10e-06 b.82.1.9 113555 3ht1A 145 1.18e-06 1y3tA 337 2.37e-06 b.82.1.5 122600 3fjsA 114 2.99e-06 2h0vA 338 3.05e-06 1yhfA 115 3.75e-06 b.82.1.9 123176 3ibmA 167 5.50e-06 1o4tA 133 8.07e-06 b.82.1.9 86622 2q30A 110 1.20e-05 2gu9A 113 1.91e-05 3kgzA 156 2.33e-05 1lr5A 163 2.84e-05 b.82.1.2 74215 2f4pA 147 3.05e-05 b.82.1.9 132933 3h7jA 243 4.27e-05 1sfnA 246 4.50e-05 b.82.1.11 105496 3l2hA 162 5.57e-05 1sefA 274 9.54e-05 b.82.1.11 105452 2gc1A 188 9.54e-05 b.82.1.7 134928 2ozjA 114 0.000107 1tq5A 242 0.000111 b.82.1.12 119311 3lagA 98 0.000130 1rc6A 261 0.000135 b.82.1.11 97287 3d82A 102 0.000180 3h8uA 125 0.000317 1qxrA 189 0.000390 b.82.1.7 96552 3es1A 172 0.000516 2b8mA 117 0.000540 b.82.1.18 128092 1y9qA 192 0.000803 a.35.1.8,b.82.1.15 116592,116593 1x82A 190 0.000893 b.82.1.7 114955 2et1A 201 0.001232 b.82.1.2 132351 2vqaA 361 0.001309 2o8qA 134 0.001493 2p17A 277 0.001583 2vecA 256 0.001762 2oziA 98 0.002371 2fqpA 97 0.002533 1juhA 350 0.002914 b.82.1.5 71884 2d40A 354 0.004209 b.82.1.23 146454 2qdrA 303 0.004403 2oa2A 148 0.004488 1j1lA 290 0.004937 b.82.1.12 90766 3i7dA 163 0.005559 3cewA 125 0.006915 1fi2A 201 0.007401 b.82.1.2 59845 2i45A 107 0.01195 2d5fA 493 0.01242 1od5A 492 0.03436 b.82.1.2,b.82.1.2 86832,86833 1j58A 385 0.03470 b.82.1.2 71531 3gbgA 276 0.03661 3lwcA 119 0.03896 2pytA 133 0.04836 b.82.1.24 149957 1zvfA 176 0.04896 b.82.1.20 146029 3fz3A 531 0.07101 2gm6A 208 0.08371 b.82.1.19 147130 1cauA 181 0.1107 b.82.1.2 28102 2phlA 397 0.1123 b.82.1.2,b.82.1.2 28082,28083 2bnmA 198 0.1180 a.35.1.3,b.82.1.10 128835,128836 3c3vA 510 0.1380 2qnkA 286 0.1825 1dgwA 178 0.2013 b.82.1.2 28090 2phdA 368 0.3809 b.82.1.23 149468 2cavA 445 0.4560 b.82.1.2,b.82.1.2 28094,28095 2ea7A 434 0.4871 2e9qA 459 0.5677 1vr3A 191 0.8648 b.82.1.6 120431 1yfuA 174 0.9248 b.82.1.20 123094 1xjaA 178 0.9768 b.82.4.1 115382 2atfA 200 1.755 b.82.1.19 127290 1fxzA 476 2.405 b.82.1.2,b.82.1.2 65059,65060 3es4A 116 2.875 3elnA 200 3.297 b.82.1.19 158185 2opkA 112 3.816 3bcwA 123 3.880 2b5hA 200 4.045 b.82.1.19 127894 2zklA 369 5.712 1e5rA 290 9.276 b.82.2.4 59276 1o5uA 101 10.34 b.82.1.8 92518 3gdcA 288 12.21 1cauB 184 12.25 b.82.1.2 28103 3i7uA 134 19.53 1q90A 292 19.59 b.2.6.1,b.84.2.2,f.23.23.1 96238,96239,96240 2arcA 164 20.33 b.82.4.1 28148 1aqt 138 21.02 1ka6A 128 24.50 d.93.1.1 68370 1dgwX 79 25.77 b.82.1.2 28091 1krhA 338 26.87 b.43.4.2,c.25.1.2,d.15.4.2 72891,72892,72893 1qwrA 319 30.22 b.82.1.3 96491 1qgxA 357 33.81 e.7.1.1 42973 1q3eA 207 37.02 b.82.3.2 95669 1mmuA 347 38.44 b.30.5.4 79303 3hqxA 111 40.05 3d8cA 349 41.16 3lzfL 217 41.76 2wfpA 394 42.46 3eqeA 171 44.20 1vavA 222 45.51 b.29.1.18 108472 1vqvA 306 47.34 d.79.4.1,d.139.1.1 114024,114025 3fvzA 329 47.54 3km5A 180 48.11 1f1uA 323 52.57 d.32.1.3,d.32.1.3 83200,83201 1cc1L 498 55.58 e.18.1.1 43301 1giqA 413 60.84 d.166.1.1,d.166.1.1 76224,76225 1zrrA 179 61.28 b.82.1.6 125555 2wff2 230 61.40 1xfdA 723 61.42 b.70.3.1,c.69.1.24 115251,115252 3g7sA 549 63.46 2qc5A 300 63.52 2oizA 361 65.12 1byfA 125 66.60 d.169.1.1 42419 1zx5A 300 67.21 b.82.1.3 125763 3l0bA 184 68.22 4pazA 123 69.17 b.6.1.1 22881 1vrbA 342 70.11 b.82.2.11 120450 2ptmA 198 76.81 3bqwA 351 78.09 1tzlA 622 78.95 c.3.1.2,d.16.1.1 112876,112877 2d1sA 548 80.10 1vq0A 302 81.54 d.193.1.1,g.81.1.1 114000,114001 1vd3A 217 82.19 3l0yA 184 82.25 1w2xA 758 82.70 c.14.1.4,c.14.1.4 109134,109135 3sil 379 85.54 3elqA 571 87.92 2ci9A 102 89.42