# List of top-scoring protein chains for t2k-w0.5-1-o_notor2-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://compbio.soe.ucsc.edu/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2o1qA 145 2.28e-15 b.82.1.21 148547 2q1zB 195 1.00e-13 3ebrA 159 1.16e-13 3cjxA 165 1.04e-12 1vj2A 126 7.81e-08 b.82.1.10 100796 2pfwA 116 1.50e-07 1v70A 105 1.40e-06 b.82.1.9 113555 3ht1A 145 1.72e-06 1y3tA 337 2.94e-06 b.82.1.5 122600 3fjsA 114 4.07e-06 1yhfA 115 4.55e-06 b.82.1.9 123176 2h0vA 338 4.60e-06 3ibmA 167 7.80e-06 1o4tA 133 1.05e-05 b.82.1.9 86622 2q30A 110 1.49e-05 2gu9A 113 2.50e-05 3kgzA 156 2.53e-05 1lr5A 163 3.71e-05 b.82.1.2 74215 2f4pA 147 3.95e-05 b.82.1.9 132933 1sfnA 246 5.14e-05 b.82.1.11 105496 3h7jA 243 7.96e-05 3l2hA 162 9.11e-05 1sefA 274 9.45e-05 b.82.1.11 105452 2ozjA 114 0.000118 3lagA 98 0.000133 2gc1A 188 0.000141 b.82.1.7 134928 1tq5A 242 0.000159 b.82.1.12 119311 1rc6A 261 0.000180 b.82.1.11 97287 3d82A 102 0.000185 3h8uA 125 0.000308 1qxrA 189 0.000485 b.82.1.7 96552 3es1A 172 0.000519 2b8mA 117 0.000631 b.82.1.18 128092 1y9qA 192 0.000806 a.35.1.8,b.82.1.15 116592,116593 2et1A 201 0.000837 b.82.1.2 132351 1x82A 190 0.001011 b.82.1.7 114955 2vecA 256 0.001186 2vqaA 361 0.001288 2o8qA 134 0.001548 2p17A 277 0.001740 2oziA 98 0.002129 2fqpA 97 0.002269 1juhA 350 0.002685 b.82.1.5 71884 2oa2A 148 0.003540 2d40A 354 0.003818 b.82.1.23 146454 1j1lA 290 0.003945 b.82.1.12 90766 1fi2A 201 0.004291 b.82.1.2 59845 3cewA 125 0.006313 2qdrA 303 0.008042 3i7dA 163 0.008981 2d5fA 493 0.009055 2i45A 107 0.01147 1j58A 385 0.01325 b.82.1.2 71531 1od5A 492 0.01822 b.82.1.2,b.82.1.2 86832,86833 3gbgA 276 0.02188 1zvfA 176 0.03680 b.82.1.20 146029 3lwcA 119 0.04538 2pytA 133 0.04780 b.82.1.24 149957 2gm6A 208 0.06239 b.82.1.19 147130 3fz3A 531 0.07008 3c3vA 510 0.08503 1cauA 181 0.08604 b.82.1.2 28102 2bnmA 198 0.08767 a.35.1.3,b.82.1.10 128835,128836 2phlA 397 0.1134 b.82.1.2,b.82.1.2 28082,28083 1dgwA 178 0.1380 b.82.1.2 28090 2qnkA 286 0.1408 2e9qA 459 0.2788 2phdA 368 0.3093 b.82.1.23 149468 2cavA 445 0.3095 b.82.1.2,b.82.1.2 28094,28095 2ea7A 434 0.3175 1vr3A 191 0.5109 b.82.1.6 120431 1xjaA 178 0.5561 b.82.4.1 115382 1yfuA 174 0.7025 b.82.1.20 123094 2atfA 200 1.131 b.82.1.19 127290 1fxzA 476 1.263 b.82.1.2,b.82.1.2 65059,65060 3es4A 116 2.107 3elnA 200 2.307 b.82.1.19 158185 2b5hA 200 2.818 b.82.1.19 127894 2zklA 369 3.050 3bcwA 123 3.422 2opkA 112 5.947 1cauB 184 6.656 b.82.1.2 28103 1o5uA 101 8.304 b.82.1.8 92518 1e5rA 290 8.726 b.82.2.4 59276 2arcA 164 14.39 b.82.4.1 28148 3gdcA 288 15.30 1ka6A 128 21.80 d.93.1.1 68370 1q90A 292 23.23 b.2.6.1,b.84.2.2,f.23.23.1 96238,96239,96240 3hqxA 111 26.39 3d8cA 349 26.57 1dgwX 79 26.65 b.82.1.2 28091 2wfpA 394 27.49 3km5A 180 27.90 1qgxA 357 28.06 e.7.1.1 42973 1qwrA 319 30.58 b.82.1.3 96491 1aqt 138 31.25 1krhA 338 32.67 b.43.4.2,c.25.1.2,d.15.4.2 72891,72892,72893 3eqeA 171 34.68 3i7uA 134 36.27 1q3eA 207 36.56 b.82.3.2 95669 3fvzA 329 37.46 2ptmA 198 38.51 1zx5A 300 41.19 b.82.1.3 125763 1vrbA 342 42.11 b.82.2.11 120450 1vavA 222 43.04 b.29.1.18 108472 1zrrA 179 43.92 b.82.1.6 125555 2awaA 390 46.72 1giqA 413 47.85 d.166.1.1,d.166.1.1 76224,76225 1l0cA 207 51.43 d.108.1.1 73393 1caxB 184 51.71 b.82.1.2 28105 3l0bA 184 51.86 2wff2 230 52.75 1cc1L 498 53.21 e.18.1.1 43301 4pazA 123 53.52 b.6.1.1 22881 2ci9A 102 55.21 3l0yA 184 55.49 1mzeA 351 55.95 b.82.2.6 79694 3lzfL 217 55.99 1vqvA 306 60.26 d.79.4.1,d.139.1.1 114024,114025 1pmiA 440 62.47 b.82.1.3 28114 1vd3A 217 63.18 3g7sA 549 64.06 2wlgA 215 68.70 1keqA 248 69.21 b.74.1.1 72387 2hfxA 260 69.70 3sil 379 69.80 3h1wA 393 69.88 1f1uA 323 70.35 d.32.1.3,d.32.1.3 83200,83201 1wgpA 137 70.47 b.82.3.2 114619 1mmuA 347 73.66 b.30.5.4 79303 1w2xA 758 76.08 c.14.1.4,c.14.1.4 109134,109135 1byfA 125 78.20 d.169.1.1 42419 3elqA 571 79.54 3bpzA 202 81.52 1tzlA 622 81.95 c.3.1.2,d.16.1.1 112876,112877 1ujxA 119 82.25 b.26.1.2 99473 1fr7A 260 83.30 b.74.1.1 27828 1fljA 260 87.13 b.74.1.1 27954 2r5xA 129 89.00