# List of top-scoring protein chains for t2k-w0.5-1-o_notor-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://compbio.soe.ucsc.edu/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2o1qA 145 2.13e-15 b.82.1.21 148547 2q1zB 195 8.41e-14 3ebrA 159 9.36e-14 3cjxA 165 1.19e-12 1vj2A 126 7.63e-08 b.82.1.10 100796 2pfwA 116 1.42e-07 1v70A 105 1.44e-06 b.82.1.9 113555 3ht1A 145 1.59e-06 1y3tA 337 2.55e-06 b.82.1.5 122600 3fjsA 114 3.14e-06 2h0vA 338 4.13e-06 1yhfA 115 4.30e-06 b.82.1.9 123176 3ibmA 167 7.41e-06 1o4tA 133 9.35e-06 b.82.1.9 86622 2q30A 110 1.49e-05 2gu9A 113 1.61e-05 3kgzA 156 2.26e-05 1lr5A 163 2.85e-05 b.82.1.2 74215 2f4pA 147 4.19e-05 b.82.1.9 132933 1sfnA 246 5.56e-05 b.82.1.11 105496 3h7jA 243 7.79e-05 3l2hA 162 9.15e-05 1sefA 274 9.94e-05 b.82.1.11 105452 2ozjA 114 0.000110 3lagA 98 0.000117 1rc6A 261 0.000158 b.82.1.11 97287 2gc1A 188 0.000167 b.82.1.7 134928 3d82A 102 0.000175 1tq5A 242 0.000214 b.82.1.12 119311 3h8uA 125 0.000281 2b8mA 117 0.000418 b.82.1.18 128092 1qxrA 189 0.000432 b.82.1.7 96552 3es1A 172 0.000456 1y9qA 192 0.000695 a.35.1.8,b.82.1.15 116592,116593 1x82A 190 0.000867 b.82.1.7 114955 2vecA 256 0.000885 2et1A 201 0.000990 b.82.1.2 132351 2vqaA 361 0.001257 2o8qA 134 0.001475 2oziA 98 0.001936 1juhA 350 0.002108 b.82.1.5 71884 2fqpA 97 0.002129 2oa2A 148 0.002968 2p17A 277 0.003178 2d40A 354 0.003179 b.82.1.23 146454 1fi2A 201 0.004286 b.82.1.2 59845 1j1lA 290 0.004490 b.82.1.12 90766 3cewA 125 0.006580 2d5fA 493 0.007841 2qdrA 303 0.008116 3i7dA 163 0.009067 2i45A 107 0.01100 1j58A 385 0.01220 b.82.1.2 71531 1od5A 492 0.01466 b.82.1.2,b.82.1.2 86832,86833 3gbgA 276 0.01971 1zvfA 176 0.03204 b.82.1.20 146029 2pytA 133 0.03382 b.82.1.24 149957 3lwcA 119 0.03500 2gm6A 208 0.05429 b.82.1.19 147130 3fz3A 531 0.06358 3c3vA 510 0.06730 1cauA 181 0.07011 b.82.1.2 28102 2bnmA 198 0.08378 a.35.1.3,b.82.1.10 128835,128836 2phlA 397 0.08648 b.82.1.2,b.82.1.2 28082,28083 2qnkA 286 0.1221 1dgwA 178 0.1350 b.82.1.2 28090 2e9qA 459 0.2276 2phdA 368 0.2426 b.82.1.23 149468 2ea7A 434 0.2688 2cavA 445 0.2942 b.82.1.2,b.82.1.2 28094,28095 1xjaA 178 0.4168 b.82.4.1 115382 1vr3A 191 0.4927 b.82.1.6 120431 1yfuA 174 0.6385 b.82.1.20 123094 1fxzA 476 1.152 b.82.1.2,b.82.1.2 65059,65060 2atfA 200 1.195 b.82.1.19 127290 3es4A 116 2.090 3elnA 200 2.154 b.82.1.19 158185 2zklA 369 2.198 2b5hA 200 2.615 b.82.1.19 127894 3bcwA 123 2.848 2opkA 112 4.631 1cauB 184 5.440 b.82.1.2 28103 1o5uA 101 7.811 b.82.1.8 92518 1e5rA 290 9.95 b.82.2.4 59276 2arcA 164 14.46 b.82.4.1 28148 3gdcA 288 14.76 1ka6A 128 20.92 d.93.1.1 68370 3hqxA 111 23.02 1q90A 292 24.62 b.2.6.1,b.84.2.2,f.23.23.1 96238,96239,96240 3km5A 180 24.71 2wfpA 394 25.47 3i7uA 134 26.55 1krhA 338 28.46 b.43.4.2,c.25.1.2,d.15.4.2 72891,72892,72893 3d8cA 349 30.99 3eqeA 171 31.08 1aqt 138 31.61 1qwrA 319 34.18 b.82.1.3 96491 1qgxA 357 34.84 e.7.1.1 42973 1dgwX 79 36.99 b.82.1.2 28091 1q3eA 207 42.89 b.82.3.2 95669 1tzlA 622 43.88 c.3.1.2,d.16.1.1 112876,112877 1vrbA 342 44.00 b.82.2.11 120450 2ci9A 102 45.77 1vavA 222 47.21 b.29.1.18 108472 3fvzA 329 47.31 1zx5A 300 48.35 b.82.1.3 125763 3l0bA 184 48.37 2ptmA 198 51.89 1pmiA 440 51.91 b.82.1.3 28114 3l0yA 184 52.09 3lzfL 217 52.99 2awaA 390 53.11 1giqA 413 55.43 d.166.1.1,d.166.1.1 76224,76225 4pazA 123 56.11 b.6.1.1 22881 1vd3A 217 56.53 1zrrA 179 58.45 b.82.1.6 125555 2wff2 230 59.85 1keqA 248 60.21 b.74.1.1 72387 1f1uA 323 60.46 d.32.1.3,d.32.1.3 83200,83201 1mzeA 351 61.72 b.82.2.6 79694 1caxB 184 65.18 b.82.1.2 28105 3g7sA 549 65.76 1ujxA 119 66.01 b.26.1.2 99473 1cc1L 498 67.44 e.18.1.1 43301 2hfxA 260 72.69 3h1wA 393 74.88 3bpzA 202 75.35 2r5xA 129 76.88 1vqvA 306 81.71 d.79.4.1,d.139.1.1 114024,114025 2wlgA 215 85.73 1fr7A 260 85.99 b.74.1.1 27828 1w2xA 758 88.44 c.14.1.4,c.14.1.4 109134,109135 1l0cA 207 89.60 d.108.1.1 73393 1wgpA 137 89.86 b.82.3.2 114619