# List of top-scoring protein chains for t2k-w0.5-1-near-backbone-11-0.3-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://compbio.soe.ucsc.edu/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2o1qA 145 2.24e-15 b.82.1.21 148547 2q1zB 195 1.66e-14 3ebrA 159 7.05e-14 3cjxA 165 2.95e-12 1vj2A 126 4.48e-08 b.82.1.10 100796 2pfwA 116 2.03e-07 1v70A 105 4.91e-07 b.82.1.9 113555 3ht1A 145 1.07e-06 3fjsA 114 2.64e-06 3kgzA 156 3.24e-06 1yhfA 115 3.73e-06 b.82.1.9 123176 1y3tA 337 4.41e-06 b.82.1.5 122600 2f4pA 147 4.91e-06 b.82.1.9 132933 2h0vA 338 5.79e-06 1o4tA 133 6.27e-06 b.82.1.9 86622 2q30A 110 7.58e-06 1sfnA 246 1.20e-05 b.82.1.11 105496 3ibmA 167 1.21e-05 2gu9A 113 1.77e-05 1sefA 274 3.14e-05 b.82.1.11 105452 2ozjA 114 3.59e-05 3h7jA 243 4.21e-05 1lr5A 163 5.38e-05 b.82.1.2 74215 1tq5A 242 9.32e-05 b.82.1.12 119311 1rc6A 261 9.83e-05 b.82.1.11 97287 3h8uA 125 0.000129 3l2hA 162 0.000154 3d82A 102 0.000219 3lagA 98 0.000227 2b8mA 117 0.000341 b.82.1.18 128092 2gc1A 188 0.000356 b.82.1.7 134928 2et1A 201 0.000489 b.82.1.2 132351 3es1A 172 0.000839 2qdrA 303 0.000869 1qxrA 189 0.001024 b.82.1.7 96552 1y9qA 192 0.001330 a.35.1.8,b.82.1.15 116592,116593 3cewA 125 0.001369 2i45A 107 0.001393 1fi2A 201 0.001732 b.82.1.2 59845 2vqaA 361 0.001946 2fqpA 97 0.002316 2oziA 98 0.002771 1x82A 190 0.002861 b.82.1.7 114955 2oa2A 148 0.003547 2p17A 277 0.004270 2d5fA 493 0.004440 2o8qA 134 0.005656 1od5A 492 0.005899 b.82.1.2,b.82.1.2 86832,86833 1juhA 350 0.005983 b.82.1.5 71884 2vecA 256 0.006918 1j58A 385 0.009305 b.82.1.2 71531 1j1lA 290 0.01126 b.82.1.12 90766 2d40A 354 0.01285 b.82.1.23 146454 3i7dA 163 0.01547 2pytA 133 0.01781 b.82.1.24 149957 3c3vA 510 0.03207 2gm6A 208 0.03456 b.82.1.19 147130 2phlA 397 0.03623 b.82.1.2,b.82.1.2 28082,28083 3lwcA 119 0.04229 1zvfA 176 0.05208 b.82.1.20 146029 3fz3A 531 0.05833 2phdA 368 0.06196 b.82.1.23 149468 2e9qA 459 0.09264 3gbgA 276 0.1292 2qnkA 286 0.1361 2ea7A 434 0.1595 2bnmA 198 0.1725 a.35.1.3,b.82.1.10 128835,128836 1cauA 181 0.1752 b.82.1.2 28102 1dgwA 178 0.1906 b.82.1.2 28090 1yfuA 174 0.2433 b.82.1.20 123094 2cavA 445 0.2944 b.82.1.2,b.82.1.2 28094,28095 1fxzA 476 0.3027 b.82.1.2,b.82.1.2 65059,65060 3es4A 116 0.6733 1xjaA 178 0.8389 b.82.4.1 115382 2atfA 200 1.413 b.82.1.19 127290 3bcwA 123 1.671 2b5hA 200 2.158 b.82.1.19 127894 3elnA 200 2.892 b.82.1.19 158185 1o5uA 101 2.977 b.82.1.8 92518 2opkA 112 3.049 2ptmA 198 3.291 1e5rA 290 4.289 b.82.2.4 59276 1vr3A 191 4.695 b.82.1.6 120431 3eqeA 171 5.185 3bpzA 202 10.24 1cauB 184 12.27 b.82.1.2 28103 2zklA 369 14.76 1wgpA 137 15.09 b.82.3.2 114619 2qvsB 310 15.25 3hqxA 111 15.64 1q3eA 207 22.01 b.82.3.2 95669 3i4pA 162 25.18 2zfhA 179 25.77 d.58.5.2 154408 2wfpA 394 27.83 2qz8A 149 28.55 1qgxA 357 29.63 e.7.1.1 42973 3gdcA 288 36.53 2cyyA 151 37.36 a.4.5.32,d.58.4.2 131028,131029 3d8cA 349 41.27 2d93A 134 45.23 2w25A 150 46.33 2aj7A 163 54.34 b.158.1.1 126842 3e97A 231 58.28 3fhiB 154 59.30 3bqwA 351 62.79 1pmiA 440 65.79 b.82.1.3 28114 5gcnA 166 70.01 d.108.1.1 40807 2z61A 370 71.89 3h1wA 393 74.53 1vrbA 342 75.12 b.82.2.11 120450 1j2lA 70 86.84 g.20.1.1 90787 1oscA 126 87.43 d.58.5.2 93490 1w18A 493 87.65