# List of top-scoring protein chains for t2k-w0.5-1-n_sep-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://compbio.soe.ucsc.edu/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2o1qA 145 1.06e-16 b.82.1.21 148547 2q1zB 195 7.86e-15 3ebrA 159 1.05e-14 3cjxA 165 8.27e-14 1vj2A 126 1.97e-08 b.82.1.10 100796 2pfwA 116 3.74e-08 1v70A 105 3.89e-07 b.82.1.9 113555 3ht1A 145 6.08e-07 2h0vA 338 9.62e-07 1y3tA 337 1.00e-06 b.82.1.5 122600 3fjsA 114 2.06e-06 1yhfA 115 2.75e-06 b.82.1.9 123176 3ibmA 167 4.26e-06 1o4tA 133 4.93e-06 b.82.1.9 86622 3kgzA 156 5.04e-06 2q30A 110 8.06e-06 1lr5A 163 1.00e-05 b.82.1.2 74215 2f4pA 147 1.10e-05 b.82.1.9 132933 2gu9A 113 1.14e-05 3h7jA 243 1.77e-05 1sfnA 246 2.13e-05 b.82.1.11 105496 3l2hA 162 3.65e-05 1sefA 274 3.89e-05 b.82.1.11 105452 2ozjA 114 4.45e-05 1rc6A 261 6.03e-05 b.82.1.11 97287 3lagA 98 6.78e-05 2gc1A 188 7.28e-05 b.82.1.7 134928 3d82A 102 0.000106 1tq5A 242 0.000144 b.82.1.12 119311 3h8uA 125 0.000157 1qxrA 189 0.000176 b.82.1.7 96552 3es1A 172 0.000270 2b8mA 117 0.000372 b.82.1.18 128092 2qdrA 303 0.000430 2vqaA 361 0.000464 1y9qA 192 0.000480 a.35.1.8,b.82.1.15 116592,116593 1x82A 190 0.000515 b.82.1.7 114955 2p17A 277 0.000590 1juhA 350 0.000777 b.82.1.5 71884 2et1A 201 0.000854 b.82.1.2 132351 2oziA 98 0.000910 2fqpA 97 0.001176 2o8qA 134 0.001234 2vecA 256 0.001822 3i7dA 163 0.002432 2oa2A 148 0.002542 1fi2A 201 0.003440 b.82.1.2 59845 2d40A 354 0.003471 b.82.1.23 146454 1j1lA 290 0.004591 b.82.1.12 90766 3cewA 125 0.004826 2i45A 107 0.004879 2d5fA 493 0.01689 3gbgA 276 0.02251 1zvfA 176 0.02405 b.82.1.20 146029 3lwcA 119 0.03223 1j58A 385 0.03315 b.82.1.2 71531 2pytA 133 0.03885 b.82.1.24 149957 2gm6A 208 0.04019 b.82.1.19 147130 3fz3A 531 0.04588 2bnmA 198 0.05572 a.35.1.3,b.82.1.10 128835,128836 2qnkA 286 0.08163 2ea7A 434 0.08753 2phlA 397 0.1046 b.82.1.2,b.82.1.2 28082,28083 1cauA 181 0.1084 b.82.1.2 28102 3c3vA 510 0.1202 1od5A 492 0.1428 b.82.1.2,b.82.1.2 86832,86833 2phdA 368 0.1924 b.82.1.23 149468 1dgwA 178 0.1993 b.82.1.2 28090 1yfuA 174 0.2356 b.82.1.20 123094 2cavA 445 0.4453 b.82.1.2,b.82.1.2 28094,28095 2e9qA 459 0.4689 1xjaA 178 0.5142 b.82.4.1 115382 1vr3A 191 0.7244 b.82.1.6 120431 2atfA 200 1.096 b.82.1.19 127290 3es4A 116 1.207 3elnA 200 1.947 b.82.1.19 158185 2b5hA 200 2.184 b.82.1.19 127894 1fxzA 476 2.263 b.82.1.2,b.82.1.2 65059,65060 3bcwA 123 2.833 2opkA 112 3.849 1e5rA 290 4.170 b.82.2.4 59276 2zklA 369 5.237 1o5uA 101 9.724 b.82.1.8 92518 1cauB 184 11.72 b.82.1.2 28103 3eqeA 171 11.77 3i7uA 134 12.96 1q3eA 207 15.32 b.82.3.2 95669 1qgxA 357 22.71 e.7.1.1 42973 2arcA 164 23.00 b.82.4.1 28148 1q90A 292 23.75 b.2.6.1,b.84.2.2,f.23.23.1 96238,96239,96240 1aqt 138 25.02 1tzlA 622 25.45 c.3.1.2,d.16.1.1 112876,112877 1dgwX 79 26.49 b.82.1.2 28091 3lzfL 217 27.33 1krhA 338 27.81 b.43.4.2,c.25.1.2,d.15.4.2 72891,72892,72893 1vd3A 217 29.24 3hqxA 111 32.60 2rijA 387 35.91 1giqA 413 36.66 d.166.1.1,d.166.1.1 76224,76225 3l0yA 184 38.70 3l0bA 184 39.92 1ka6A 128 41.29 d.93.1.1 68370 1vavA 222 41.81 b.29.1.18 108472 2d1sA 548 42.19 3sil 379 42.84 1f1uA 323 44.40 d.32.1.3,d.32.1.3 83200,83201 3d8cA 349 45.77 1lci 550 49.80 3gdcA 288 50.82 2wfpA 394 51.77 3bpzA 202 51.98 1vrbA 342 53.50 b.82.2.11 120450 1vq0A 302 56.00 d.193.1.1,g.81.1.1 114000,114001 2pamA 141 56.94 b.82.1.1 149348 3km5A 180 58.93 1widA 130 59.35 b.142.1.2 114667 2oizA 361 60.17 2r5xA 129 64.75 1xfdA 723 66.14 b.70.3.1,c.69.1.24 115251,115252 1mzeA 351 67.84 b.82.2.6 79694 2pa7A 141 67.91 b.82.1.1 149339 3fvzA 329 69.00 1vqvA 306 70.57 d.79.4.1,d.139.1.1 114024,114025 3h1wA 393 71.93 3fsyA 332 72.29 2ci9A 102 78.33 1z0nA 96 81.09 b.1.18.21 145955 2ptmA 198 81.72 2zfhA 179 82.88 d.58.5.2 154408 1nwaA 203 83.74 d.58.28.1 86295 1s4iA 175 84.65 1byfA 125 85.82 d.169.1.1 42419 1zrrA 179 86.18 b.82.1.6 125555 3g7sA 549 87.87 3bqwA 351 89.74