# List of top-scoring protein chains for t2k-w0.5-1-n_notor2-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://compbio.soe.ucsc.edu/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2o1qA 145 2.17e-14 b.82.1.21 148547 3ebrA 159 1.50e-12 2q1zB 195 1.71e-12 3cjxA 165 8.49e-12 1vj2A 126 4.80e-07 b.82.1.10 100796 2pfwA 116 1.31e-06 3ht1A 145 6.03e-06 1v70A 105 7.17e-06 b.82.1.9 113555 1y3tA 337 1.37e-05 b.82.1.5 122600 3kgzA 156 1.85e-05 2h0vA 338 2.24e-05 1yhfA 115 2.67e-05 b.82.1.9 123176 3fjsA 114 4.49e-05 3ibmA 167 4.68e-05 2gu9A 113 6.56e-05 1o4tA 133 7.43e-05 b.82.1.9 86622 2p17A 277 7.69e-05 2f4pA 147 8.61e-05 b.82.1.9 132933 2q30A 110 1.00e-04 1lr5A 163 0.000120 b.82.1.2 74215 1sfnA 246 0.000145 b.82.1.11 105496 2ozjA 114 0.000222 1sefA 274 0.000236 b.82.1.11 105452 1rc6A 261 0.000250 b.82.1.11 97287 3h7jA 243 0.000267 3l2hA 162 0.000269 2vqaA 361 0.000290 2qdrA 303 0.000312 1tq5A 242 0.000429 b.82.1.12 119311 3h8uA 125 0.000442 2gc1A 188 0.000640 b.82.1.7 134928 3lagA 98 0.000643 3d82A 102 0.000908 2b8mA 117 0.001023 b.82.1.18 128092 2d40A 354 0.001366 b.82.1.23 146454 2o8qA 134 0.001803 2vecA 256 0.001848 1qxrA 189 0.001989 b.82.1.7 96552 1x82A 190 0.003828 b.82.1.7 114955 3i7dA 163 0.004021 1y9qA 192 0.004245 a.35.1.8,b.82.1.15 116592,116593 2et1A 201 0.004679 b.82.1.2 132351 1juhA 350 0.005451 b.82.1.5 71884 2oziA 98 0.005542 2fqpA 97 0.008052 2phlA 397 0.008641 b.82.1.2,b.82.1.2 28082,28083 1j58A 385 0.008989 b.82.1.2 71531 3cewA 125 0.01013 3gbgA 276 0.01035 2ea7A 434 0.01088 1j1lA 290 0.01178 b.82.1.12 90766 2oa2A 148 0.01241 2d5fA 493 0.01249 1fi2A 201 0.01334 b.82.1.2 59845 3es1A 172 0.01641 2i45A 107 0.01649 1zvfA 176 0.07696 b.82.1.20 146029 2gm6A 208 0.08204 b.82.1.19 147130 2e9qA 459 0.09112 2pytA 133 0.1313 b.82.1.24 149957 3fz3A 531 0.1462 3lwcA 119 0.1470 1dgwA 178 0.1737 b.82.1.2 28090 1yfuA 174 0.2025 b.82.1.20 123094 2bnmA 198 0.2621 a.35.1.3,b.82.1.10 128835,128836 1xjaA 178 0.3079 b.82.4.1 115382 1cauA 181 0.3538 b.82.1.2 28102 2qnkA 286 0.3613 2phdA 368 0.3726 b.82.1.23 149468 1cauB 184 0.3770 b.82.1.2 28103 2cavA 445 0.6375 b.82.1.2,b.82.1.2 28094,28095 3bcwA 123 0.8054 1w2xA 758 0.9237 c.14.1.4,c.14.1.4 109134,109135 2zklA 369 1.007 1od5A 492 1.216 b.82.1.2,b.82.1.2 86832,86833 1vr3A 191 1.631 b.82.1.6 120431 2atfA 200 1.672 b.82.1.19 127290 2b5hA 200 1.742 b.82.1.19 127894 3es4A 116 3.102 2opkA 112 4.144 3sil 379 4.763 1qtfA 246 4.772 b.47.1.1 25830 1zrrA 179 5.703 b.82.1.6 125555 3km5A 180 6.192 2fd6U 276 6.371 g.7.1.3,g.7.1.3,g.7.1.3 145159,145160,145161 1k3iA 656 7.156 b.1.18.2,b.18.1.1,b.69.1.1 68113,68114,68115 3elnA 200 7.647 b.82.1.19 158185 2bklA 695 8.920 3c3vA 510 8.920 3getA 365 11.12 2dnjA 260 12.61 d.151.1.1 41790 3bvxA 1045 13.98 a.8.3.1,b.30.5.6,c.6.2.1 155676,155677,155678 1s4iA 175 15.39 2qqiA 318 16.45 b.18.1.2,b.18.1.2 151218,151219 3fvzA 329 17.29 1e4cP 215 17.33 c.74.1.1 34969 2bibA 547 18.88 b.109.1.1,d.157.1.8 128581,128582 1fm2B 520 19.15 1o5uA 101 20.10 b.82.1.8 92518 1kcw 1046 20.32 1fxzA 476 20.53 b.82.1.2,b.82.1.2 65059,65060 1arbA 268 20.76 b.47.1.1 25766 1hxs2 272 22.92 1xipA 388 24.02 b.69.14.1 115360 3holA 509 24.91 3lzfL 217 28.57 2arcA 164 29.85 b.82.4.1 28148 1e5rA 290 29.94 b.82.2.4 59276 2hydA 578 30.12 c.37.1.12,f.37.1.1 136875,136876 3cg8A 343 30.23 3hqxA 111 31.30 1v04A 355 31.41 b.68.6.2 100240 1so7A 382 32.17 b.68.1.1 112106 3bh7B 352 32.37 2uzxB 727 32.59 3eqeA 171 33.50 1nd4A 264 33.88 d.144.1.6 91815 1q3eA 207 33.88 b.82.3.2 95669 3cjiB 239 35.88 1kcbA 340 38.18 b.6.1.3,b.6.1.3 90951,90952 2v7bA 529 38.20 1vd3A 217 39.04 1cc1L 498 40.30 e.18.1.1 43301 1uaiA 224 40.76 b.29.1.18 107761 1wgpA 137 41.02 b.82.3.2 114619 3dsmA 328 41.90 3ivmA 693 45.25 1erjA 393 46.05 b.69.4.1 27660 1h2xA 710 46.31 b.69.7.1,c.69.1.4 76598,76599 2z2nA 299 46.37 3bx1C 181 47.21 b.42.4.1 155704 1accA 735 47.43 f.11.1.1 43828 1fr7A 260 48.21 b.74.1.1 27828 3jzmA 519 49.43 2aaaA 484 49.65 b.71.1.1,c.1.8.1 27777,28764 1o7fA 469 50.41 a.4.5.31,b.82.3.2,b.82.3.2 81131,81132,81133 1q90A 292 51.47 b.2.6.1,b.84.2.2,f.23.23.1 96238,96239,96240 1ogpA 393 53.19 b.1.18.6,d.176.1.1 92927,92928 3ju4A 670 53.21 3g4eA 297 53.64 3i7uA 134 54.59 1v25A 541 55.69 e.23.1.1 108275 3eifA 936 56.56 2d1sA 548 56.80 3fz0A 360 57.30 2aj7A 163 59.63 b.158.1.1 126842 2pa7A 141 59.66 b.82.1.1 149339 1izcA 339 60.00 c.1.12.5 83838 1yp2A 451 60.87 b.81.1.4,c.68.1.6 123798,123799 2dt4A 143 61.36 1b4tA 153 62.56 b.1.8.1 22283 1aozA 552 62.58 b.6.1.3,b.6.1.3,b.6.1.3 23124,23125,23126 1by5A 714 62.65 f.4.3.3 43800 1a65A 504 63.68 b.6.1.3,b.6.1.3,b.6.1.3 23148,23149,23150 2olnA 397 64.00 1gof 639 64.41 3fmcA 368 64.85 3iplA 501 65.98 1qlgA 355 66.69 b.68.3.1 27627 1caxB 184 66.95 b.82.1.2 28105 1vrbA 342 67.49 b.82.2.11 120450 1gxjA 186 67.50 d.215.1.1 70707 1nqeA 594 68.71 f.4.3.3 86027 2jmzA 186 69.24 3li4A 314 70.53 2rqeA 106 74.35 2bw4A 340 76.43 b.6.1.3,b.6.1.3 129320,129321 1jscA 630 76.57 c.31.1.3,c.36.1.5,c.36.1.9 67224,67225,67226 2po3A 424 77.47 1mu5A 471 77.76 a.156.1.3,d.14.1.3,d.122.1.2 79472,79473,79474 2vovA 336 79.64 2a74A 643 79.98 1dgwX 79 80.91 b.82.1.2 28091 1jc4A 148 80.96 d.32.1.4 62863 3bpzA 202 84.64 2pz4A 239 85.02 2a5hA 416 86.25 2gtlN 220 88.19 b.61.7.1,g.12.1.1,h.1.32.1 135670,135671,135672 1vqvA 306 88.77 d.79.4.1,d.139.1.1 114024,114025 3lb9A 182 89.25