# List of top-scoring protein chains for t2k-w0.5-1-n_notor-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://compbio.soe.ucsc.edu/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2o1qA 145 2.39e-16 b.82.1.21 148547 2q1zB 195 1.93e-14 3ebrA 159 2.31e-14 3cjxA 165 1.76e-13 1vj2A 126 2.73e-08 b.82.1.10 100796 2pfwA 116 7.28e-08 3ht1A 145 5.58e-07 1v70A 105 6.60e-07 b.82.1.9 113555 2h0vA 338 1.96e-06 1y3tA 337 1.97e-06 b.82.1.5 122600 1yhfA 115 2.85e-06 b.82.1.9 123176 3fjsA 114 3.06e-06 3kgzA 156 3.75e-06 3ibmA 167 4.38e-06 1o4tA 133 6.17e-06 b.82.1.9 86622 2gu9A 113 6.60e-06 2q30A 110 7.65e-06 1lr5A 163 8.43e-06 b.82.1.2 74215 2f4pA 147 1.10e-05 b.82.1.9 132933 1sfnA 246 1.81e-05 b.82.1.11 105496 2ozjA 114 2.95e-05 3h7jA 243 3.37e-05 1sefA 274 3.52e-05 b.82.1.11 105452 3lagA 98 4.46e-05 3l2hA 162 4.49e-05 1rc6A 261 5.97e-05 b.82.1.11 97287 1tq5A 242 7.76e-05 b.82.1.12 119311 3d82A 102 8.99e-05 2gc1A 188 9.03e-05 b.82.1.7 134928 3h8uA 125 0.000117 1qxrA 189 0.000179 b.82.1.7 96552 3es1A 172 0.000224 2b8mA 117 0.000247 b.82.1.18 128092 1y9qA 192 0.000370 a.35.1.8,b.82.1.15 116592,116593 2vecA 256 0.000423 1x82A 190 0.000457 b.82.1.7 114955 2vqaA 361 0.000546 2et1A 201 0.000559 b.82.1.2 132351 2o8qA 134 0.000693 2oziA 98 0.000706 2p17A 277 0.000868 1juhA 350 0.000871 b.82.1.5 71884 2fqpA 97 0.000929 2oa2A 148 0.001846 1fi2A 201 0.001887 b.82.1.2 59845 2qdrA 303 0.002051 3i7dA 163 0.002391 3cewA 125 0.002650 2i45A 107 0.002830 2d40A 354 0.002972 b.82.1.23 146454 1j1lA 290 0.003440 b.82.1.12 90766 3gbgA 276 0.01015 2d5fA 493 0.01058 1zvfA 176 0.01333 b.82.1.20 146029 1j58A 385 0.02180 b.82.1.2 71531 3lwcA 119 0.02266 2pytA 133 0.02756 b.82.1.24 149957 2gm6A 208 0.02910 b.82.1.19 147130 2bnmA 198 0.03694 a.35.1.3,b.82.1.10 128835,128836 3fz3A 531 0.03798 2phlA 397 0.04979 b.82.1.2,b.82.1.2 28082,28083 1od5A 492 0.05556 b.82.1.2,b.82.1.2 86832,86833 1cauA 181 0.05687 b.82.1.2 28102 2ea7A 434 0.05833 3c3vA 510 0.06889 2qnkA 286 0.07295 1dgwA 178 0.1138 b.82.1.2 28090 2cavA 445 0.1567 b.82.1.2,b.82.1.2 28094,28095 2phdA 368 0.1678 b.82.1.23 149468 1yfuA 174 0.1902 b.82.1.20 123094 2e9qA 459 0.3094 1xjaA 178 0.3870 b.82.4.1 115382 1vr3A 191 0.3895 b.82.1.6 120431 2atfA 200 0.7281 b.82.1.19 127290 3es4A 116 0.9301 3elnA 200 1.237 b.82.1.19 158185 2b5hA 200 1.405 b.82.1.19 127894 1fxzA 476 1.857 b.82.1.2,b.82.1.2 65059,65060 3bcwA 123 2.117 2zklA 369 2.526 1e5rA 290 3.025 b.82.2.4 59276 2opkA 112 3.187 1cauB 184 4.992 b.82.1.2 28103 1o5uA 101 8.543 b.82.1.8 92518 1q3eA 207 14.13 b.82.3.2 95669 2arcA 164 18.69 b.82.4.1 28148 3eqeA 171 18.75 3gdcA 288 19.24 3hqxA 111 20.46 1q90A 292 20.57 b.2.6.1,b.84.2.2,f.23.23.1 96238,96239,96240 1qgxA 357 22.60 e.7.1.1 42973 3d8cA 349 23.07 3i7uA 134 23.10 2wfpA 394 27.93 1vd3A 217 29.24 3l0yA 184 29.42 1dgwX 79 29.82 b.82.1.2 28091 1tzlA 622 29.91 c.3.1.2,d.16.1.1 112876,112877 3l0bA 184 31.11 3fvzA 329 31.96 2r5xA 129 33.03 3bpzA 202 33.07 1giqA 413 35.30 d.166.1.1,d.166.1.1 76224,76225 1mzeA 351 36.46 b.82.2.6 79694 1krhA 338 40.26 b.43.4.2,c.25.1.2,d.15.4.2 72891,72892,72893 3km5A 180 40.69 1zrrA 179 41.51 b.82.1.6 125555 1caxB 184 41.61 b.82.1.2 28105 3bpuA 88 42.64 3sil 379 43.39 2ci9A 102 45.12 1vrbA 342 47.95 b.82.2.11 120450 1aqt 138 48.16 2oizA 361 48.96 3lzfL 217 53.89 1xfdA 723 55.45 b.70.3.1,c.69.1.24 115251,115252 3h1wA 393 56.80 1vavA 222 56.96 b.29.1.18 108472 1wgpA 137 60.38 b.82.3.2 114619 2wlgA 215 60.39 1l0cA 207 60.88 d.108.1.1 73393 1widA 130 60.97 b.142.1.2 114667 2ptmA 198 61.07 2pamA 141 61.72 b.82.1.1 149348 1zx5A 300 62.54 b.82.1.3 125763 1vqvA 306 62.75 d.79.4.1,d.139.1.1 114024,114025 1ka6A 128 62.92 d.93.1.1 68370 1fr7A 260 65.25 b.74.1.1 27828 2awaA 390 66.23 2pa7A 141 69.86 b.82.1.1 149339 1yo1A 260 75.34 2fd6U 276 76.29 g.7.1.3,g.7.1.3,g.7.1.3 145159,145160,145161 3holA 509 78.03 3fmcA 368 80.36 1s4iA 175 85.58 1f1uA 323 86.58 d.32.1.3,d.32.1.3 83200,83201 2wff2 230 87.93 1ujxA 119 88.17 b.26.1.2 99473