# List of top-scoring protein chains for t2k-w0.5-1-dssp-ehl2-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://compbio.soe.ucsc.edu/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2o1qA 145 3.24e-14 b.82.1.21 148547 2q1zB 195 1.96e-12 3ebrA 159 2.19e-12 3cjxA 165 1.72e-11 1vj2A 126 5.24e-07 b.82.1.10 100796 2pfwA 116 1.63e-06 1v70A 105 1.27e-05 b.82.1.9 113555 3ht1A 145 1.48e-05 1y3tA 337 1.93e-05 b.82.1.5 122600 2h0vA 338 3.06e-05 3fjsA 114 3.55e-05 1yhfA 115 4.34e-05 b.82.1.9 123176 3ibmA 167 4.89e-05 1o4tA 133 5.52e-05 b.82.1.9 86622 2gu9A 113 8.77e-05 2q30A 110 0.000157 3kgzA 156 0.000161 1lr5A 163 0.000192 b.82.1.2 74215 2f4pA 147 0.000250 b.82.1.9 132933 1sfnA 246 0.000332 b.82.1.11 105496 3lagA 98 0.000454 3h7jA 243 0.000642 1sefA 274 0.000644 b.82.1.11 105452 2gc1A 188 0.000681 b.82.1.7 134928 3l2hA 162 0.000738 2ozjA 114 0.000788 3d82A 102 0.000802 1tq5A 242 0.000877 b.82.1.12 119311 1rc6A 261 0.000906 b.82.1.11 97287 3h8uA 125 0.001344 1qxrA 189 0.002361 b.82.1.7 96552 2b8mA 117 0.002736 b.82.1.18 128092 1x82A 190 0.003186 b.82.1.7 114955 2vecA 256 0.003601 3es1A 172 0.003687 1y9qA 192 0.005302 a.35.1.8,b.82.1.15 116592,116593 2et1A 201 0.005726 b.82.1.2 132351 2o8qA 134 0.006023 1juhA 350 0.007617 b.82.1.5 71884 2vqaA 361 0.007835 2fqpA 97 0.008606 2oziA 98 0.01000 2p17A 277 0.01270 2oa2A 148 0.01454 2qdrA 303 0.02374 2d40A 354 0.02386 b.82.1.23 146454 3i7dA 163 0.02617 1j1lA 290 0.02639 b.82.1.12 90766 1fi2A 201 0.02864 b.82.1.2 59845 3gbgA 276 0.02986 2i45A 107 0.03776 3cewA 125 0.04225 2d5fA 493 0.08504 1zvfA 176 0.09734 b.82.1.20 146029 1j58A 385 0.1366 b.82.1.2 71531 2gm6A 208 0.1403 b.82.1.19 147130 1cauA 181 0.1921 b.82.1.2 28102 1od5A 492 0.1954 b.82.1.2,b.82.1.2 86832,86833 2bnmA 198 0.1969 a.35.1.3,b.82.1.10 128835,128836 3lwcA 119 0.2206 2pytA 133 0.2505 b.82.1.24 149957 3c3vA 510 0.2982 1dgwA 178 0.3700 b.82.1.2 28090 3fz3A 531 0.3737 2phlA 397 0.3938 b.82.1.2,b.82.1.2 28082,28083 2qnkA 286 0.4139 2ea7A 434 0.6113 2cavA 445 0.7671 b.82.1.2,b.82.1.2 28094,28095 1xjaA 178 1.257 b.82.4.1 115382 2e9qA 459 1.287 1vr3A 191 2.047 b.82.1.6 120431 2phdA 368 2.308 b.82.1.23 149468 1yfuA 174 2.521 b.82.1.20 123094 2atfA 200 2.875 b.82.1.19 127290 2zklA 369 4.243 1fxzA 476 5.912 b.82.1.2,b.82.1.2 65059,65060 2b5hA 200 5.975 b.82.1.19 127894 3elnA 200 6.295 b.82.1.19 158185 3es4A 116 10.75 1e5rA 290 13.05 b.82.2.4 59276 2opkA 112 13.88 1cauB 184 14.43 b.82.1.2 28103 3bcwA 123 16.15 1krhA 338 18.25 b.43.4.2,c.25.1.2,d.15.4.2 72891,72892,72893 1o5uA 101 19.15 b.82.1.8 92518 3km5A 180 23.62 1dgwX 79 25.13 b.82.1.2 28091 1q90A 292 34.51 b.2.6.1,b.84.2.2,f.23.23.1 96238,96239,96240 1ka6A 128 39.06 d.93.1.1 68370 3i7uA 134 39.39 3d8cA 349 41.57 3gdcA 288 41.67 3hqxA 111 46.29 1vavA 222 46.37 b.29.1.18 108472 2wff2 230 46.94 1giqA 413 47.77 d.166.1.1,d.166.1.1 76224,76225 1zrrA 179 49.15 b.82.1.6 125555 3g7sA 549 52.52 3eqeA 171 55.36 2ci9A 102 58.19 3kptA 355 58.27 1fr7A 260 59.91 b.74.1.1 27828 1q3eA 207 60.76 b.82.3.2 95669 1aqt 138 61.10 1s4iA 175 62.30 1qwrA 319 62.50 b.82.1.3 96491 1tzlA 622 64.21 c.3.1.2,d.16.1.1 112876,112877 3bpuA 88 65.29 3lzfL 217 67.49 2r76A 152 68.55 1qgxA 357 69.46 e.7.1.1 42973 3holA 509 70.28 1ujxA 119 71.11 b.26.1.2 99473 2r5xA 129 71.34 1pmiA 440 73.37 b.82.1.3 28114 1yo1A 260 75.26 1wgpA 137 76.80 b.82.3.2 114619 1keqA 248 79.63 b.74.1.1 72387 1mzeA 351 79.83 b.82.2.6 79694 1vqvA 306 80.80 d.79.4.1,d.139.1.1 114024,114025 1byfA 125 81.20 d.169.1.1 42419 1f1uA 323 82.09 d.32.1.3,d.32.1.3 83200,83201 1w2xA 758 87.11 c.14.1.4,c.14.1.4 109134,109135 1c3gA 170 87.17 b.4.1.1,b.4.1.1 22831,22832 1fljA 260 89.93 b.74.1.1 27954