# List of top-scoring protein chains for t2k-w0.5-1-bys-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://compbio.soe.ucsc.edu/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2o1qA 145 1.38e-14 b.82.1.21 148547 3ebrA 159 7.64e-13 2q1zB 195 8.99e-13 3cjxA 165 4.36e-12 1vj2A 126 3.19e-07 b.82.1.10 100796 2pfwA 116 4.99e-07 3ht1A 145 4.68e-06 1v70A 105 4.91e-06 b.82.1.9 113555 2h0vA 338 1.48e-05 1yhfA 115 1.85e-05 b.82.1.9 123176 1y3tA 337 2.08e-05 b.82.1.5 122600 3ibmA 167 2.15e-05 3fjsA 114 2.70e-05 1o4tA 133 4.01e-05 b.82.1.9 86622 2q30A 110 4.17e-05 3kgzA 156 5.70e-05 2gu9A 113 9.79e-05 1lr5A 163 0.000116 b.82.1.2 74215 3h7jA 243 0.000138 2f4pA 147 0.000149 b.82.1.9 132933 1sefA 274 0.000247 b.82.1.11 105452 3l2hA 162 0.000258 2gc1A 188 0.000296 b.82.1.7 134928 3lagA 98 0.000340 3d82A 102 0.000354 2ozjA 114 0.000455 1sfnA 246 0.000510 b.82.1.11 105496 1rc6A 261 0.000527 b.82.1.11 97287 1tq5A 242 0.000562 b.82.1.12 119311 3h8uA 125 0.000652 3es1A 172 0.000817 2b8mA 117 0.000835 b.82.1.18 128092 1qxrA 189 0.001415 b.82.1.7 96552 1y9qA 192 0.002056 a.35.1.8,b.82.1.15 116592,116593 1x82A 190 0.002302 b.82.1.7 114955 2vecA 256 0.002459 2et1A 201 0.002588 b.82.1.2 132351 2vqaA 361 0.004009 2qdrA 303 0.006135 2i45A 107 0.006447 2fqpA 97 0.007075 2oziA 98 0.007626 2d40A 354 0.007649 b.82.1.23 146454 1juhA 350 0.008226 b.82.1.5 71884 2oa2A 148 0.01115 3i7dA 163 0.01118 2o8qA 134 0.01267 1j1lA 290 0.01378 b.82.1.12 90766 2p17A 277 0.01570 1fi2A 201 0.02095 b.82.1.2 59845 3cewA 125 0.02352 3gbgA 276 0.02844 2d5fA 493 0.05563 1zvfA 176 0.06065 b.82.1.20 146029 2bnmA 198 0.07297 a.35.1.3,b.82.1.10 128835,128836 1od5A 492 0.08497 b.82.1.2,b.82.1.2 86832,86833 2gm6A 208 0.08808 b.82.1.19 147130 3fz3A 531 0.1047 3lwcA 119 0.1097 2qnkA 286 0.1341 2pytA 133 0.1445 b.82.1.24 149957 1cauA 181 0.1662 b.82.1.2 28102 1j58A 385 0.2176 b.82.1.2 71531 2ea7A 434 0.2744 3c3vA 510 0.2974 2phdA 368 0.3109 b.82.1.23 149468 1dgwA 178 0.3736 b.82.1.2 28090 2cavA 445 0.5151 b.82.1.2,b.82.1.2 28094,28095 2phlA 397 0.5468 b.82.1.2,b.82.1.2 28082,28083 2e9qA 459 0.6961 1yfuA 174 0.9002 b.82.1.20 123094 2atfA 200 1.140 b.82.1.19 127290 1xjaA 178 1.164 b.82.4.1 115382 1vr3A 191 1.713 b.82.1.6 120431 3elnA 200 1.869 b.82.1.19 158185 2b5hA 200 2.235 b.82.1.19 127894 1fxzA 476 3.109 b.82.1.2,b.82.1.2 65059,65060 3es4A 116 4.176 1cauB 184 5.483 b.82.1.2 28103 2opkA 112 7.489 1e5rA 290 7.640 b.82.2.4 59276 2zklA 369 8.268 1krhA 338 10.73 b.43.4.2,c.25.1.2,d.15.4.2 72891,72892,72893 1o5uA 101 11.80 b.82.1.8 92518 1dgwX 79 12.59 b.82.1.2 28091 3bcwA 123 15.01 3eqeA 171 15.82 1qwrA 319 20.65 b.82.1.3 96491 1q90A 292 22.47 b.2.6.1,b.84.2.2,f.23.23.1 96238,96239,96240 2arcA 164 24.48 b.82.4.1 28148 3km5A 180 26.39 3d8cA 349 26.87 1ka6A 128 28.16 d.93.1.1 68370 1q3eA 207 29.13 b.82.3.2 95669 4pazA 123 29.95 b.6.1.1 22881 1aqt 138 33.74 1wgpA 137 35.82 b.82.3.2 114619 1giqA 413 36.54 d.166.1.1,d.166.1.1 76224,76225 1tzlA 622 38.32 c.3.1.2,d.16.1.1 112876,112877 2wfpA 394 40.13 1vavA 222 41.84 b.29.1.18 108472 1mzeA 351 46.29 b.82.2.6 79694 1vrbA 342 48.64 b.82.2.11 120450 2wlgA 215 50.09 1pmiA 440 53.08 b.82.1.3 28114 3gdcA 288 54.24 3i7uA 134 54.36 1zrrA 179 56.71 b.82.1.6 125555 3bpuA 88 58.48 3lzfL 217 58.98 1caxB 184 60.98 b.82.1.2 28105 1zx5A 300 65.71 b.82.1.3 125763 1widA 130 69.75 b.142.1.2 114667 1fr7A 260 70.07 b.74.1.1 27828 2awaA 390 71.13 3l0yA 184 72.90 1f1uA 323 74.88 d.32.1.3,d.32.1.3 83200,83201 3hqxA 111 75.80 1qgxA 357 81.74 e.7.1.1 42973 2ci9A 102 85.64 1byfA 125 87.60 d.169.1.1 42419