# List of top-scoring protein chains for t2k-w0.5-1-CB_burial_14_7-0.3-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://compbio.soe.ucsc.edu/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2o1qA 145 3.69e-16 b.82.1.21 148547 2q1zB 195 8.90e-15 3ebrA 159 1.81e-14 3cjxA 165 2.64e-12 1vj2A 126 1.05e-07 b.82.1.10 100796 2pfwA 116 2.72e-07 1v70A 105 1.20e-06 b.82.1.9 113555 3ht1A 145 1.67e-06 3fjsA 114 5.91e-06 1o4tA 133 7.57e-06 b.82.1.9 86622 1sfnA 246 1.44e-05 b.82.1.11 105496 1yhfA 115 1.47e-05 b.82.1.9 123176 2gu9A 113 1.79e-05 2f4pA 147 2.21e-05 b.82.1.9 132933 2q30A 110 2.47e-05 3ibmA 167 3.72e-05 3kgzA 156 3.76e-05 1tq5A 242 0.000108 b.82.1.12 119311 1rc6A 261 0.000109 b.82.1.11 97287 3h7jA 243 0.000116 2h0vA 338 0.000156 1sefA 274 0.000190 b.82.1.11 105452 2qdrA 303 0.000198 2ozjA 114 0.000295 3h8uA 125 0.000327 1lr5A 163 0.000393 b.82.1.2 74215 1y3tA 337 0.000426 b.82.1.5 122600 2p17A 277 0.000925 3lagA 98 0.001170 3es1A 172 0.001985 2oa2A 148 0.002038 3l2hA 162 0.002143 2b8mA 117 0.002144 b.82.1.18 128092 2vecA 256 0.003456 1qxrA 189 0.003516 b.82.1.7 96552 2et1A 201 0.003931 b.82.1.2 132351 1x82A 190 0.004251 b.82.1.7 114955 3d82A 102 0.004300 2gc1A 188 0.005298 b.82.1.7 134928 2fqpA 97 0.006491 1fi2A 201 0.007286 b.82.1.2 59845 2i45A 107 0.008572 1y9qA 192 0.01030 a.35.1.8,b.82.1.15 116592,116593 1j58A 385 0.01050 b.82.1.2 71531 2oziA 98 0.01133 1od5A 492 0.01283 b.82.1.2,b.82.1.2 86832,86833 2vqaA 361 0.01733 2d5fA 493 0.01861 2d40A 354 0.02383 b.82.1.23 146454 2pytA 133 0.02439 b.82.1.24 149957 2o8qA 134 0.04214 2phlA 397 0.05105 b.82.1.2,b.82.1.2 28082,28083 3cewA 125 0.05297 1zvfA 176 0.09211 b.82.1.20 146029 2gm6A 208 0.1352 b.82.1.19 147130 3i7dA 163 0.1731 3lwcA 119 0.1762 1yfuA 174 0.2361 b.82.1.20 123094 3fz3A 531 0.2401 2phdA 368 0.2619 b.82.1.23 149468 2qnkA 286 0.2717 1juhA 350 0.2973 b.82.1.5 71884 3c3vA 510 0.4633 3es4A 116 0.5242 2cavA 445 0.7540 b.82.1.2,b.82.1.2 28094,28095 1j1lA 290 0.9138 b.82.1.12 90766 1fxzA 476 1.037 b.82.1.2,b.82.1.2 65059,65060 2bnmA 198 1.038 a.35.1.3,b.82.1.10 128835,128836 3bcwA 123 1.043 1dgwA 178 1.071 b.82.1.2 28090 2e9qA 459 1.124 1cauA 181 1.127 b.82.1.2 28102 1xjaA 178 1.941 b.82.4.1 115382 2ea7A 434 2.130 2ptmA 198 4.145 1e5rA 290 4.996 b.82.2.4 59276 2atfA 200 5.691 b.82.1.19 127290 2b5hA 200 5.844 b.82.1.19 127894 1q3eA 207 7.749 b.82.3.2 95669 2opkA 112 10.06 3elnA 200 11.15 b.82.1.19 158185 3bpzA 202 11.65 2qvsB 310 16.52 3eqeA 171 22.63 2zklA 369 22.98 1wgpA 137 30.87 b.82.3.2 114619 1cauB 184 31.40 b.82.1.2 28103 4pazA 123 39.69 b.6.1.1 22881 3hqxA 111 42.41 2d93A 134 42.46 1stmA 157 43.49 b.121.7.1 23281 3i7uA 134 50.53 1o5uA 101 57.22 b.82.1.8 92518 3kwpA 296 57.88 3gbgA 276 59.06 3h4wA 339 59.16 3fhiB 154 61.18 1vrbA 342 66.60 b.82.2.11 120450 1pmyA 123 70.90 b.6.1.1 22888 3dczA 207 74.55 3ia4A 162 87.71 3erxA 123 89.08