# List of top-scoring protein chains for t2k-w0.5-1-CB8-sep9-0.3-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://compbio.soe.ucsc.edu/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2o1qA 145 2.03e-15 b.82.1.21 148547 2q1zB 195 5.11e-14 3ebrA 159 1.85e-13 3cjxA 165 9.73e-12 1vj2A 126 1.57e-07 b.82.1.10 100796 2pfwA 116 6.80e-07 3ht1A 145 9.78e-07 1v70A 105 2.80e-06 b.82.1.9 113555 2gu9A 113 3.65e-06 3fjsA 114 4.18e-06 1o4tA 133 5.56e-06 b.82.1.9 86622 3ibmA 167 1.11e-05 1yhfA 115 1.50e-05 b.82.1.9 123176 3kgzA 156 1.80e-05 2q30A 110 1.99e-05 1y3tA 337 2.50e-05 b.82.1.5 122600 2f4pA 147 4.85e-05 b.82.1.9 132933 1sfnA 246 5.96e-05 b.82.1.11 105496 3h8uA 125 9.18e-05 2ozjA 114 0.000110 1lr5A 163 0.000116 b.82.1.2 74215 1sefA 274 0.000119 b.82.1.11 105452 2h0vA 338 0.000134 3h7jA 243 0.000148 2gc1A 188 0.000243 b.82.1.7 134928 3lagA 98 0.000266 3l2hA 162 0.000444 2b8mA 117 0.000491 b.82.1.18 128092 1rc6A 261 0.000531 b.82.1.11 97287 3d82A 102 0.000618 3es1A 172 0.000701 1tq5A 242 0.000815 b.82.1.12 119311 1qxrA 189 0.001044 b.82.1.7 96552 2et1A 201 0.001328 b.82.1.2 132351 1y9qA 192 0.001377 a.35.1.8,b.82.1.15 116592,116593 2oziA 98 0.001442 2oa2A 148 0.002075 2vecA 256 0.002146 2p17A 277 0.002535 1fi2A 201 0.003386 b.82.1.2 59845 3cewA 125 0.003903 2vqaA 361 0.004191 1x82A 190 0.004664 b.82.1.7 114955 2fqpA 97 0.005203 2qdrA 303 0.006355 2pytA 133 0.006450 b.82.1.24 149957 2o8qA 134 0.01119 1j58A 385 0.01416 b.82.1.2 71531 1od5A 492 0.01481 b.82.1.2,b.82.1.2 86832,86833 2d5fA 493 0.02199 2i45A 107 0.02262 2gm6A 208 0.02415 b.82.1.19 147130 3lwcA 119 0.02464 3i7dA 163 0.02636 2d40A 354 0.03451 b.82.1.23 146454 1zvfA 176 0.04132 b.82.1.20 146029 1j1lA 290 0.04521 b.82.1.12 90766 3c3vA 510 0.05404 2phlA 397 0.06477 b.82.1.2,b.82.1.2 28082,28083 1yfuA 174 0.08638 b.82.1.20 123094 1cauA 181 0.1442 b.82.1.2 28102 1juhA 350 0.1588 b.82.1.5 71884 2ea7A 434 0.1620 1dgwA 178 0.1832 b.82.1.2 28090 3fz3A 531 0.2150 2e9qA 459 0.2468 3es4A 116 0.2896 3gbgA 276 0.2942 2cavA 445 0.3087 b.82.1.2,b.82.1.2 28094,28095 2qnkA 286 0.3159 2bnmA 198 0.3470 a.35.1.3,b.82.1.10 128835,128836 2phdA 368 0.3651 b.82.1.23 149468 2opkA 112 0.4933 3bcwA 123 0.7564 1fxzA 476 1.075 b.82.1.2,b.82.1.2 65059,65060 1vr3A 191 1.175 b.82.1.6 120431 2atfA 200 1.284 b.82.1.19 127290 1xjaA 178 2.366 b.82.4.1 115382 2b5hA 200 2.396 b.82.1.19 127894 3elnA 200 2.718 b.82.1.19 158185 2ptmA 198 3.160 1e5rA 290 3.213 b.82.2.4 59276 2qvsB 310 3.800 2zklA 369 4.162 3bpzA 202 6.119 1q3eA 207 9.570 b.82.3.2 95669 3eqeA 171 12.32 1o5uA 101 13.26 b.82.1.8 92518 1cauB 184 18.11 b.82.1.2 28103 3hqxA 111 21.57 1zrrA 179 21.88 b.82.1.6 125555 2wfpA 394 30.52 2oaaA 249 38.28 1x0cA 549 39.70 3e97A 231 39.99 1mp3A 292 42.56 c.68.1.6 79374 3h4wA 339 43.41 1vp6A 138 44.04 b.82.3.2 113939 1xmtA 103 46.11 d.108.1.1 115561 3fz0A 360 46.14 1wgpA 137 46.18 b.82.3.2 114619 1rl3A 288 49.29 b.82.3.2,b.82.3.2 104975,104976 2zfhA 179 51.34 d.58.5.2 154408 3h1wA 393 52.46 3fhiB 154 52.69 3kwpA 296 53.08 1gmuA 143 56.56 b.107.1.1,d.58.38.1 65335,65336 5gcnA 166 56.93 d.108.1.1 40807 1k8qA 377 57.57 c.69.1.6 72177 2f02A 323 58.70 c.72.1.1 132649 1e3dA 266 60.64 e.19.1.1 59188 2d93A 134 61.35 1ntnA 72 61.79 g.7.1.1 44414 1h5rA 293 68.33 c.68.1.6 65623 1ymkA 175 69.25 c.46.1.1 123699 1w18A 493 71.45 1ubkS 267 75.32 e.19.1.1 88423 1p1cA 199 76.04 c.66.1.16 87669 1cx4A 305 80.75 b.82.3.2,b.82.3.2 59099,59100 3eo6A 106 80.96 1dzrA 183 85.79 b.82.1.1 28076 3f4aA 169 86.31