# List of top-scoring protein chains for T0582.t06-w0.5 hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://compbio.soe.ucsc.edu/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1tq5A 242 1.23e-20 b.82.1.12 119311 1j1lA 290 2.72e-20 b.82.1.12 90766 2p17A 277 1.03e-16 1sq4A 278 2.29e-15 b.82.1.11 98962 2uy9A 385 2.02e-13 1j58A 385 2.10e-13 b.82.1.2 71531 2v09A 385 2.12e-13 2uyaA 383 2.19e-13 2uybA 385 2.19e-13 2uy8A 385 2.28e-13 2vqaA 361 5.04e-12 1sefA 274 1.16e-09 b.82.1.11 105452 3ht1A 145 2.88e-09 1rc6A 261 8.40e-09 b.82.1.11 97287 1sfnA 246 1.79e-08 b.82.1.11 105496 1vj2A 126 3.29e-08 b.82.1.10 100796 1o4tA 133 6.88e-08 b.82.1.9 86622 2vecA 256 7.18e-08 3cjxA 165 1.46e-07 3h7jA 243 1.48e-07 2pfwA 116 3.77e-07 2eteA 201 4.82e-07 b.82.1.2 132354 2et1A 201 4.83e-07 b.82.1.2 132351 2et7A 201 6.07e-07 b.82.1.2 132352 2z2sB 203 7.54e-07 2qdrA 303 1.18e-06 2q1zB 195 1.22e-06 3l2hA 162 1.37e-06 2h0vA 338 1.39e-06 1y3tA 337 1.41e-06 b.82.1.5 122600 3i7dA 163 1.47e-06 2f4pA 147 1.59e-06 b.82.1.9 132933 2o8qA 134 2.53e-06 1lr5A 163 5.28e-06 b.82.1.2 74215 3bu7A 394 7.01e-06 b.82.1.23 155593 2d40A 354 7.03e-06 b.82.1.23 146454 3ibmA 167 1.73e-05 3h8uA 125 3.26e-05 3d82A 102 0.000102 3jzvA 166 0.000105 3cewA 125 0.000138 1yfuA 174 0.000164 b.82.1.20 123094 3ebrA 159 0.000177 3kgzA 156 0.000189 1juhA 350 0.000260 b.82.1.5 71884 1v70A 105 0.000334 b.82.1.9 113555 1vr3A 191 0.000410 b.82.1.6 120431 1yhfA 115 0.000693 b.82.1.9 123176 2q30A 110 0.000864 1zvfA 176 0.001628 b.82.1.20 146029 2i45A 107 0.002060 2phdA 368 0.002195 b.82.1.23 149468 1uijA 416 0.002251 b.82.1.2,b.82.1.2 107866,107867 3balA 153 0.002633 2fqpA 97 0.003714 1ipkA 416 0.004171 b.82.1.2,b.82.1.2 71264,71265 3es1A 172 0.004647 3fe5A 285 0.004752 3lagA 98 0.004848 3lwcA 119 0.005042 1ipjA 416 0.005066 b.82.1.2,b.82.1.2 71258,71259 2o1qA 145 0.005124 b.82.1.21 148547 2d5fA 493 0.009202 1od5A 492 0.009345 b.82.1.2,b.82.1.2 86832,86833 2opkA 112 0.01277 2e9qA 459 0.01354 3h50A 114 0.01494 2gu9A 113 0.01518 2oa2A 148 0.02173 1uikA 418 0.02226 b.82.1.2,b.82.1.2 107878,107879 2qnkA 286 0.02592 2pytA 133 0.03217 b.82.1.24 149957 2gc1A 188 0.03235 b.82.1.7 134928 1qxrA 189 0.03347 b.82.1.7 96552 1x82A 190 0.03442 b.82.1.7 114955 2b8mA 117 0.04580 b.82.1.18 128092 1j3qA 190 0.06518 b.82.1.7 90821 1qwrA 319 0.09040 b.82.1.3 96491 3fz3A 531 0.09880 2cv6A 424 0.1768 1xjaA 178 0.2100 b.82.4.1 115382 2aacA 177 0.2548 b.82.4.1 28150 2ea7A 434 0.2555 2arcA 164 0.2570 b.82.4.1 28148 2araA 149 0.2791 b.82.4.1 28152 1lknA 89 0.3391 b.82.1.8 84624 1fxzA 476 0.3752 b.82.1.2,b.82.1.2 65059,65060 1o5uA 101 0.3886 b.82.1.8 92518 1ucxA 476 0.4116 b.82.1.2,b.82.1.2 99192,99193 3fjsA 114 0.4602 2cavA 445 0.6116 b.82.1.2,b.82.1.2 28094,28095 1ud1A 476 0.6131 b.82.1.2,b.82.1.2 99202,99203 3kscA 496 0.7138 2gm6A 208 0.7633 b.82.1.19 147130 1y9qA 192 1.029 a.35.1.8,b.82.1.15 116592,116593 2eaaA 433 1.179 3eqeA 171 1.284 2pa7A 141 1.530 b.82.1.1 149339 2ic1A 205 1.610 b.82.1.19 147600 2ozjA 114 1.749 2q4sA 200 1.749 b.82.1.19 139877 3elnA 200 1.753 b.82.1.19 158185 3bcwA 123 2.028 3kglA 466 2.040 1vrbA 342 2.242 b.82.2.11 120450 3dtbA 624 2.689 3dl3A 119 3.329 b.82.2.13 157762 3es4A 116 3.633 2ux8A 297 4.068 1cauB 184 4.209 b.82.1.2 28103 1cauA 181 5.355 b.82.1.2 28102 1dgwA 178 5.370 b.82.1.2 28090 2bnmA 198 5.517 a.35.1.3,b.82.1.10 128835,128836 2jhnA 295 6.790 2b9uA 176 7.919 3hqxA 111 8.042 2eceA 462 8.224 2jhjA 295 8.759 1wltA 196 8.967 b.82.1.1 121013 3eo6A 106 9.524 1wm1A 317 11.83 c.69.1.7 109405 3gcfA 394 12.09 3co2A 140 13.01 2paeA 141 13.20 b.82.1.1 149341 3g7dA 443 16.34 2pakA 141 18.71 b.82.1.1 149346 2wr8A 259 23.37 2ok0H 216 26.53 b.1.1.2 139122 1e5rA 290 27.90 b.82.2.4 59276 1l9xA 315 28.21 c.23.16.1 73762 1wu8A 256 29.09 3dkqA 243 31.40 1aozA 552 32.89 b.6.1.3,b.6.1.3,b.6.1.3 23124,23125,23126 3ie4A 107 33.22 1kmmA 424 34.99 c.51.1.1,d.104.1.1 33174,40723 1httA 423 35.17 c.51.1.1,d.104.1.1 33178,40727 2cjsA 167 35.82 b.7.1.1 130547 2el9A 431 36.75 c.51.1.1,d.104.1.1 146887,146888 2k0gA 142 36.76 3cl1A 140 37.12 b.82.3.2 156750 2prdA 174 37.36 b.40.5.1 25435 1vp6A 138 37.98 b.82.3.2 113939 1u12A 138 38.66 b.82.3.2 112946 1yllA 200 38.79 b.82.1.17 123653 2rliA 171 40.28 1mxgA 435 43.67 b.71.1.1,c.1.8.1 85193,85194 1j3wA 163 44.77 d.110.7.1 90833 2b2nA 344 45.83 c.37.1.19 127710 1vj0A 380 46.26 b.35.1.2,c.2.1.1 100786,100787 2ppiA 144 46.60 2flhA 155 48.06 3bb6A 127 48.36 b.82.2.13 155045 3i44A 497 48.93 1wl7A 312 50.38 b.67.2.1 120996 3iy0H 120 50.50 2d2eA 250 50.75 2dbnA 461 51.52 3g5wA 318 52.63 1vqoA 240 53.01 b.34.5.3,b.40.4.5 120361,120362 3g6eA 237 56.45 2otlA 239 56.88 b.34.5.3,b.40.4.5 139345,139346 1zrrA 179 58.37 b.82.1.6 125555 3g2eA 194 59.30 1jb0B 740 59.99 f.29.1.1 62821 3d5yA 314 60.42 2qviA 215 61.71 b.1.6.1,b.1.6.1 151388,151389 3clpA 140 61.87 2g6vA 402 62.91 2qsjA 154 63.51 1fvdB 223 66.59 b.1.1.1,b.1.1.2 19867,20963 3c3vA 510 66.65 1q4uA 151 68.50 d.38.1.5 95828 1jj2A 239 68.84 b.34.5.3,b.40.4.5 63084,63085 3bdyH 230 70.28 2perA 267 71.86 2r6gA 381 74.41 b.40.6.3,c.37.1.12 151604,151605 2awnA 381 74.50 b.40.6.3,c.37.1.12 127459,127460 1q1bA 381 76.07 b.40.6.3,c.37.1.12 95562,95563 1fwrA 213 76.38 c.1.10.1 29164 2ka9A 189 77.19 2qt6A 498 77.97 1ncjA 215 80.69 b.1.6.1,b.1.6.1 22196,22197 1n8zB 220 80.85 b.1.1.1,b.1.1.2 80320,80321 1fveB 223 80.99 b.1.1.1,b.1.1.2 19871,20967 2o7pA 380 81.08 2h2qA 521 81.74 3cu9A 314 81.79 3d61A 314 81.83 2b2yA 187 81.89 b.34.13.2,b.34.13.2 127754,127755 3iam1 438 84.70 1fs0E 138 86.79 a.2.10.1,b.93.1.1 59997,59998 1faiH 221 87.51 b.1.1.1,b.1.1.2 19845,20949 3bx3A 335 88.29 1aqtA 138 89.97 a.2.10.1,b.93.1.1 15718,28435