# List of top-scoring protein chains for t06-w0.5-1-str4-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://compbio.soe.ucsc.edu/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1tq5A 242 5.48e-19 b.82.1.12 119311 2p17A 277 1.41e-18 1j1lA 290 3.58e-18 b.82.1.12 90766 2h0vA 338 4.33e-16 2qdrA 303 5.72e-16 1juhA 350 1.62e-15 b.82.1.5 71884 1sfnA 246 5.73e-15 b.82.1.11 105496 2vqaA 361 7.13e-15 1sefA 274 1.06e-14 b.82.1.11 105452 1rc6A 261 8.87e-14 b.82.1.11 97287 2vecA 256 1.19e-13 2phdA 368 1.38e-13 b.82.1.23 149468 2d40A 354 8.90e-13 b.82.1.23 146454 1j58A 385 1.34e-12 b.82.1.2 71531 2o1qA 145 3.35e-12 b.82.1.21 148547 3ebrA 159 7.90e-12 3cjxA 165 1.40e-11 2q1zB 195 2.72e-11 3ibmA 167 3.02e-11 3c3vA 510 3.29e-11 1y3tA 337 4.59e-11 b.82.1.5 122600 2e9qA 459 6.06e-11 3ht1A 145 6.88e-11 3kgzA 156 8.35e-11 2pfwA 116 8.43e-11 1lr5A 163 1.12e-10 b.82.1.2 74215 3h7jA 243 1.17e-10 2qnkA 286 1.37e-10 1vj2A 126 1.39e-10 b.82.1.10 100796 1o4tA 133 1.79e-10 b.82.1.9 86622 2oa2A 148 1.81e-10 3l2hA 162 3.27e-10 1yhfA 115 3.46e-10 b.82.1.9 123176 3i7dA 163 3.91e-10 3fjsA 114 4.01e-10 2d5fA 493 4.12e-10 3cewA 125 4.80e-10 1v70A 105 5.78e-10 b.82.1.9 113555 3h8uA 125 7.76e-10 2b8mA 117 9.00e-10 b.82.1.18 128092 3es1A 172 2.11e-09 2gu9A 113 2.89e-09 1fi2A 201 3.14e-09 b.82.1.2 59845 2q30A 110 3.39e-09 2et1A 201 4.88e-09 b.82.1.2 132351 2ea7A 434 5.26e-09 2ozjA 114 9.10e-09 2gc1A 188 9.59e-09 b.82.1.7 134928 1x82A 190 1.13e-08 b.82.1.7 114955 3fz3A 531 1.29e-08 3lagA 98 1.37e-08 2o8qA 134 2.05e-08 2pytA 133 2.14e-08 b.82.1.24 149957 3eqeA 171 3.33e-08 1y9qA 192 4.11e-08 a.35.1.8,b.82.1.15 116592,116593 3d82A 102 4.33e-08 2fqpA 97 5.19e-08 3lwcA 119 1.57e-07 2f4pA 147 1.81e-07 b.82.1.9 132933 2gm6A 208 1.93e-07 b.82.1.19 147130 2oziA 98 3.20e-07 3g7dA 443 8.65e-07 2b5hA 200 8.98e-07 b.82.1.19 127894 1zrrA 179 9.47e-07 b.82.1.6 125555 3bcwA 123 1.10e-06 2i45A 107 1.58e-06 1xjaA 178 1.61e-06 b.82.4.1 115382 1dgwA 178 8.30e-06 b.82.1.2 28090 2bnmA 198 1.84e-05 a.35.1.3,b.82.1.10 128835,128836 1yfuA 174 2.84e-05 b.82.1.20 123094 3elnA 200 2.88e-05 b.82.1.19 158185 3gbgA 276 6.33e-05 1vr3A 191 8.87e-05 b.82.1.6 120431 3d0jA 140 0.000198 2opkA 112 0.000234 3esgA 193 0.000266 1zvfA 176 0.000402 b.82.1.20 146029 1pmi 440 0.000632 2pamA 141 0.003903 b.82.1.1 149348 2pa7A 141 0.005001 b.82.1.1 149339 3es4A 116 0.005843 1qwrA 319 0.006601 b.82.1.3 96491 1pmiA 440 0.008307 b.82.1.3 28114 2vpvA 166 0.008908 3ejkA 174 0.02658 3k3oA 371 0.02940 1vrbA 342 0.03311 b.82.2.11 120450 1o5uA 101 0.03539 b.82.1.8 92518 2wwuA 371 0.04090 1yllA 200 0.04561 b.82.1.17 123653 1zx5A 300 0.06875 b.82.1.3 125763 3d8cA 349 0.07876 3k2oA 336 0.09485 2yu1A 451 0.1199 3fhiB 154 0.1536 3h1wA 393 0.1677 1e5rA 290 0.3378 b.82.2.4 59276 2rg4A 216 0.3939 2arcA 164 0.4109 b.82.4.1 28148 1o7fA 469 0.4119 a.4.5.31,b.82.3.2,b.82.3.2 81131,81132,81133 1h2kA 349 0.5028 b.82.2.6 76572 1q3eA 207 0.5478 b.82.3.2 95669 1rl3A 288 0.5677 b.82.3.2,b.82.3.2 104975,104976 3dl3A 119 0.5910 b.82.2.13 157762 3bb6A 127 0.6065 b.82.2.13 155045 2bdrA 175 0.8311 b.82.1.14 128342 2wfpA 394 1.134 2d93A 134 1.207 3bpzA 202 1.365 2ptmA 198 1.423 2qvsB 310 1.531 3idbB 161 1.561 2fmyA 220 1.568 3gqiB 226 1.616 2vpjA 301 1.719 1eybA 471 1.821 b.82.1.4 28115 3eo6A 106 1.878 1vp6A 138 1.940 b.82.3.2 113939 1ep0A 185 2.422 b.82.1.1 28080 3e5xA 250 2.687 3cf6E 694 3.014 1hw5A 210 3.115 a.4.5.4,b.82.3.2 16098,28137 1mpxA 615 3.121 b.18.1.13,c.69.1.21 85041,85042 3lkwA 236 3.176 1upiA 225 3.259 b.82.1.1 99757 2h6cA 232 3.543 a.4.5.4,b.82.3.2 147232,147233 1oi6A 205 3.722 b.82.1.1 103940 3dkqA 243 3.863 3e6cC 250 3.985 a.4.5.4,b.82.3.2 158038,158039 2ixkA 184 4.071 2qjvA 270 4.206 2h6bA 250 4.582 a.4.5.4,b.82.3.2 147228,147229 2c0zA 216 4.808 b.82.1.1 129615 2b9uA 176 4.836 1zybA 232 4.924 a.4.5.4,b.82.3.2 125815,125816 2gauA 232 5.384 a.4.5.4,b.82.3.2 134894,134895 2v4nA 254 5.955 1wgpA 137 6.678 b.82.3.2 114619 3e97A 231 6.809 3h3zA 235 7.122 1xsqA 168 7.308 b.82.1.14 115999 1x2jA 316 7.370 b.68.11.1 121643 1zgkA 308 8.707 b.68.11.1 145998 1nxmA 197 9.641 b.82.1.1 86385 2fluX 308 9.890 b.68.11.1 133750 2cohA 202 10.08 a.4.5.4,b.82.3.2 130677,130678 3gdcA 288 10.42 2pqqA 149 11.41 3gydA 187 11.43 2zcwA 202 11.47 3i1cA 324 12.48 2uvkA 357 12.55 3dv8A 220 13.19 3ii7A 306 13.60 3hqxA 111 13.64 1ywkA 289 13.87 b.82.1.13 124155 2wqkA 251 13.98 3htnA 149 14.85 2pia 321 14.89 3d0sA 227 15.12 3lhnA 126 15.65 3l6pA 236 16.14 1rydA 387 16.26 c.2.1.3,d.81.1.5 118801,118802 2phjA 251 16.89 3fx3A 237 17.01 2bklA 695 17.15 1a62A 130 17.84 a.140.3.1,b.40.4.5 64708,64709 2we3A 264 18.99 1j9lA 247 20.13 c.106.1.1 62762 2gc7A 386 20.36 b.69.2.1 134954 2zdbA 195 22.18 1a0tP 413 22.21 f.4.3.2 43794 3dn7A 194 24.94 2opwA 291 24.96 2o62A 270 25.40 b.60.1.9,b.60.1.9 148622,148623 1o5lA 213 25.50 b.82.3.2 92506 1h5bB 113 25.97 b.1.1.1 60639 1q0xH 221 28.12 b.1.1.1,b.1.1.2 95517,95518 2ichA 335 29.43 b.176.1.1 147602 1dgwX 79 31.44 b.82.1.2 28091 2z69A 154 32.24 2h6lA 146 33.43 d.290.1.3 136197 1ru4A 400 33.58 b.80.1.9 97836 3gsnB 243 33.82 1n9pA 207 33.88 b.1.18.16 80343 1kbpA 432 34.14 b.1.12.1,d.159.1.1 22349,42068 2wanA 921 34.35 1dgwY 93 34.75 3bwsA 433 35.66 3dczA 207 37.43 1aohA 147 37.86 b.2.2.2 22401 2a1xA 308 38.39 b.82.2.9 126022 1x9lA 149 38.61 b.2.10.1 109528 3fgbA 361 38.66 2f15A 96 38.99 b.1.18.21 146993 2piaA 321 39.66 b.43.4.2,c.25.1.2,d.15.4.2 25663,31553,37704 2pndA 119 40.01 1mdaH 368 41.42 b.69.2.1 27637 3czgA 644 42.26 1u6lA 149 42.35 d.32.1.7 113067 1f46A 140 43.92 d.129.4.1 59643 1xruA 282 44.41 b.82.1.13 122262 3iurA 693 45.22 1i3zA 103 46.79 d.93.1.1 83667 2jkdA 187 47.37 2nw2B 243 47.70 1j0hA 588 48.41 b.1.18.2,b.71.1.1,c.1.8.1 77027,77028,77029 2glxA 332 49.96 1s4cA 155 50.27 b.82.2.7 118860 2oyzA 94 50.37 b.82.1.22 149082 1fo0A 116 51.57 b.1.1.1 20610 1wzaA 488 52.26 b.71.1.1,c.1.8.1 121489,121490 2eg4A 230 52.59 3dhvA 512 52.65 2ns9A 157 53.28 d.129.3.10 148382 1h3gA 601 55.85 b.1.18.2,b.71.1.1,c.1.8.1 90594,90595,90596 2qr5A 582 55.99 b.69.7.2,c.69.1.33 151278,151279 2wozA 318 56.54 2bsyA 278 56.98 b.85.4.1,b.85.4.1 129129,129130 1id2A 106 58.29 b.6.1.1 62288 1ag6A 99 59.62 b.6.1.1 22857 2fp8A 322 59.95 1qksA 567 61.61 a.3.1.2,b.70.2.1 15951,27710 2we2A 286 62.17 3cfuA 159 62.89 1c1lA 136 63.09 b.29.1.3 24219 1npeA 267 65.60 b.68.5.1 92032 2r9qA 370 65.71 3biaX 116 65.86 2bnuB 241 67.95 b.1.1.1,b.1.1.2 146159,146160 3lm8A 222 70.47 2vrqA 496 70.55 2i24N 121 71.04 1crzA 403 71.10 b.68.4.1,c.51.2.1 27629,33211 3iplA 501 71.75 3edeA 601 74.50 2fyqA 194 75.20 1uf3A 228 76.10 d.159.1.6 99317 2ok8A 316 76.75 3floA 460 78.66 1fitA 147 78.68 d.13.1.1 37499 3ck2A 176 78.77 d.159.1.7 156724 3lydA 161 82.59 1sq9A 397 83.46 b.69.4.1 105889 1mjfA 281 83.53 c.66.1.17 79198 1ogaE 252 84.73 b.1.1.1,b.1.1.2 86992,86993 3f4fA 167 84.99 1iakA 199 86.88 b.1.1.2,d.19.1.1 21625,38199 1n1tA 641 89.70 b.29.1.15,b.68.1.1 79821,79822