# List of top-scoring protein chains for t06-w0.5-1-str2-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://compbio.soe.ucsc.edu/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1tq5A 242 6.81e-18 b.82.1.12 119311 1j1lA 290 1.56e-17 b.82.1.12 90766 2p17A 277 2.15e-17 2h0vA 338 1.62e-15 2qdrA 303 2.30e-15 1juhA 350 1.20e-14 b.82.1.5 71884 1sfnA 246 2.51e-14 b.82.1.11 105496 2vqaA 361 5.99e-14 1sefA 274 6.19e-14 b.82.1.11 105452 1rc6A 261 2.92e-13 b.82.1.11 97287 2phdA 368 5.63e-13 b.82.1.23 149468 2vecA 256 6.12e-13 1j58A 385 1.77e-12 b.82.1.2 71531 2d40A 354 3.62e-12 b.82.1.23 146454 2o1qA 145 1.38e-11 b.82.1.21 148547 3ebrA 159 2.83e-11 3cjxA 165 5.32e-11 3ibmA 167 7.43e-11 2q1zB 195 1.06e-10 3c3vA 510 1.12e-10 2e9qA 459 1.38e-10 3ht1A 145 1.77e-10 3kgzA 156 1.88e-10 1y3tA 337 1.93e-10 b.82.1.5 122600 3h7jA 243 3.52e-10 2qnkA 286 3.75e-10 2pfwA 116 4.06e-10 1vj2A 126 4.07e-10 b.82.1.10 100796 1lr5A 163 4.70e-10 b.82.1.2 74215 2d5fA 493 5.98e-10 2oa2A 148 6.19e-10 1o4tA 133 6.73e-10 b.82.1.9 86622 3l2hA 162 1.01e-09 1yhfA 115 1.14e-09 b.82.1.9 123176 3i7dA 163 1.67e-09 3fjsA 114 1.88e-09 3h8uA 125 2.16e-09 2b8mA 117 2.31e-09 b.82.1.18 128092 1v70A 105 2.54e-09 b.82.1.9 113555 3cewA 125 3.70e-09 3es1A 172 7.66e-09 1fi2A 201 9.49e-09 b.82.1.2 59845 2q30A 110 1.09e-08 2gu9A 113 1.52e-08 2et1A 201 1.59e-08 b.82.1.2 132351 3fz3A 531 1.62e-08 2ea7A 434 1.70e-08 1x82A 190 1.87e-08 b.82.1.7 114955 2ozjA 114 1.97e-08 2gc1A 188 2.44e-08 b.82.1.7 134928 2pytA 133 4.21e-08 b.82.1.24 149957 3lagA 98 4.52e-08 2o8qA 134 5.63e-08 3eqeA 171 8.62e-08 3d82A 102 9.05e-08 2fqpA 97 1.05e-07 1y9qA 192 1.31e-07 a.35.1.8,b.82.1.15 116592,116593 2f4pA 147 1.53e-07 b.82.1.9 132933 3lwcA 119 3.23e-07 2gm6A 208 6.43e-07 b.82.1.19 147130 2oziA 98 7.00e-07 3g7dA 443 1.55e-06 1zrrA 179 1.57e-06 b.82.1.6 125555 2b5hA 200 2.34e-06 b.82.1.19 127894 1xjaA 178 2.50e-06 b.82.4.1 115382 3bcwA 123 3.06e-06 2i45A 107 4.78e-06 1dgwA 178 1.35e-05 b.82.1.2 28090 2bnmA 198 3.21e-05 a.35.1.3,b.82.1.10 128835,128836 1yfuA 174 5.16e-05 b.82.1.20 123094 3elnA 200 0.000108 b.82.1.19 158185 1vr3A 191 0.000110 b.82.1.6 120431 3gbgA 276 0.000166 2opkA 112 0.000283 3d0jA 140 0.000311 3esgA 193 0.000448 1pmi 440 0.000630 1zvfA 176 0.000656 b.82.1.20 146029 2pamA 141 0.002152 b.82.1.1 149348 2pa7A 141 0.003224 b.82.1.1 149339 1qwrA 319 0.005388 b.82.1.3 96491 3es4A 116 0.006013 2vpvA 166 0.009010 1pmiA 440 0.01161 b.82.1.3 28114 3ejkA 174 0.02072 1vrbA 342 0.03123 b.82.2.11 120450 1o5uA 101 0.04505 b.82.1.8 92518 3k2oA 336 0.07297 1zx5A 300 0.09619 b.82.1.3 125763 3k3oA 371 0.09768 2wwuA 371 0.09856 1yllA 200 0.1575 b.82.1.17 123653 3fhiB 154 0.1697 3d8cA 349 0.2007 2yu1A 451 0.2187 2arcA 164 0.2493 b.82.4.1 28148 1e5rA 290 0.2992 b.82.2.4 59276 3h1wA 393 0.3599 1o7fA 469 0.4382 a.4.5.31,b.82.3.2,b.82.3.2 81131,81132,81133 2rg4A 216 0.5801 3bb6A 127 0.6702 b.82.2.13 155045 1q3eA 207 0.7470 b.82.3.2 95669 1h2kA 349 0.8997 b.82.2.6 76572 3dl3A 119 0.9477 b.82.2.13 157762 3eo6A 106 1.041 3idbB 161 1.343 2bdrA 175 1.353 b.82.1.14 128342 2qvsB 310 1.496 2fmyA 220 1.501 3bpzA 202 1.526 1rl3A 288 1.535 b.82.3.2,b.82.3.2 104975,104976 3i1cA 324 1.649 2b9uA 176 1.650 2ptmA 198 1.817 2wfpA 394 1.928 1eybA 471 2.091 b.82.1.4 28115 2d93A 134 2.254 1vp6A 138 2.295 b.82.3.2 113939 1upiA 225 2.483 b.82.1.1 99757 1ep0A 185 2.535 b.82.1.1 28080 3cf6E 694 2.642 1hw5A 210 2.924 a.4.5.4,b.82.3.2 16098,28137 1zybA 232 3.014 a.4.5.4,b.82.3.2 125815,125816 1mpxA 615 3.025 b.18.1.13,c.69.1.21 85041,85042 3e5xA 250 3.031 1oi6A 205 3.372 b.82.1.1 103940 2ixkA 184 3.462 3lkwA 236 3.790 2h6cA 232 4.068 a.4.5.4,b.82.3.2 147232,147233 3h3zA 235 4.096 3dkqA 243 4.200 3e6cC 250 4.243 a.4.5.4,b.82.3.2 158038,158039 3gqiB 226 4.478 2h6bA 250 4.495 a.4.5.4,b.82.3.2 147228,147229 2c0zA 216 4.590 b.82.1.1 129615 2vpjA 301 4.835 3hqxA 111 4.871 2gauA 232 5.554 a.4.5.4,b.82.3.2 134894,134895 3e97A 231 5.733 1xsqA 168 5.777 b.82.1.14 115999 1wgpA 137 6.678 b.82.3.2 114619 1dgwX 79 6.947 b.82.1.2 28091 1a0tP 413 8.079 f.4.3.2 43794 1nxmA 197 8.825 b.82.1.1 86385 3fx3A 237 8.969 3d0sA 227 10.25 3gdcA 288 10.69 1x2jA 316 11.02 b.68.11.1 121643 2qjvA 270 12.32 1zgkA 308 12.33 b.68.11.1 145998 2uvkA 357 12.39 3gydA 187 12.60 2pia 321 13.87 3dv8A 220 14.31 2pqqA 149 14.59 3ii7A 306 16.36 3lhnA 126 17.34 1ywkA 289 18.53 b.82.1.13 124155 1a62A 130 18.63 a.140.3.1,b.40.4.5 64708,64709 3dn7A 194 18.79 1o5lA 213 18.88 b.82.3.2 92506 2v4nA 254 18.91 2z69A 154 19.27 2fluX 308 21.09 b.68.11.1 133750 2a1xA 308 21.11 b.82.2.9 126022 2o62A 270 21.88 b.60.1.9,b.60.1.9 148622,148623 3fgbA 361 21.95 3bwsA 433 22.03 2cohA 202 22.07 a.4.5.4,b.82.3.2 130677,130678 1ru4A 400 22.46 b.80.1.9 97836 3htnA 149 22.51 2h6lA 146 23.39 d.290.1.3 136197 3idaA 587 24.43 2fp8A 322 24.48 2zcwA 202 24.86 2we3A 264 25.12 1rydA 387 26.85 c.2.1.3,d.81.1.5 118801,118802 2piaA 321 27.98 b.43.4.2,c.25.1.2,d.15.4.2 25663,31553,37704 1npeA 267 30.48 b.68.5.1 92032 2pndA 119 30.50 2zdbA 195 31.63 2wozA 318 31.73 3li4A 314 31.82 2oyzA 94 32.27 b.82.1.22 149082 1dgwY 93 32.77 1x9lA 149 36.76 b.2.10.1 109528 3l6pA 236 36.95 2phjA 251 38.18 2opwA 291 38.59 2jkdA 187 39.58 3iplA 501 39.87 2glxA 332 40.10 2f15A 96 40.54 b.1.18.21 146993 3cjyA 259 40.81 1h5bB 113 43.21 b.1.1.1 60639 1wzaA 488 43.23 b.71.1.1,c.1.8.1 121489,121490 1u6lA 149 43.30 d.32.1.7 113067 2gc7A 386 43.78 b.69.2.1 134954 1snzA 344 43.80 b.30.5.4 98930 2ae5B 528 45.70 1xruA 282 45.78 b.82.1.13 122262 3dhvA 512 46.25 2bsyA 278 47.71 b.85.4.1,b.85.4.1 129129,129130 1f46A 140 48.79 d.129.4.1 59643 2bgcA 238 49.22 a.4.5.4,b.82.3.3 128458,128459 1q0xH 221 49.28 b.1.1.1,b.1.1.2 95517,95518 2ichA 335 49.46 b.176.1.1 147602 2r9qA 370 51.60 2wanA 921 52.49 2yzjA 169 53.50 1pjxA 314 53.76 b.68.6.1 104167 3floA 460 53.76 1n1tA 641 54.48 b.29.1.15,b.68.1.1 79821,79822 1iz6A 138 55.81 b.34.5.2,b.40.4.5 76976,76977 1kb5B 117 56.22 b.1.1.1 20632 3ec7A 357 56.43 3m6sA 331 57.12 1kbpA 432 57.52 b.1.12.1,d.159.1.1 22349,42068 3frxA 319 58.10 2ok8A 316 58.56 1s4cA 155 61.06 b.82.2.7 118860 3lydA 161 62.26 1fo0A 116 62.52 b.1.1.1 20610 2psbA 320 62.83 c.153.1.1 149819 1ag6A 99 63.26 b.6.1.1 22857 3g7sA 549 63.39 3cfuA 159 64.32 3dtyA 398 65.22 3dczA 207 66.40 1crzA 403 66.98 b.68.4.1,c.51.2.1 27629,33211 1sq9A 397 68.90 b.69.4.1 105889 2wqkA 251 69.01 3bbjA 272 69.89 1c1lA 136 72.79 b.29.1.3 24219 3edeA 601 73.74 3hnpA 353 73.93 3gi9H 223 77.22 2bgiA 272 78.15 1j9lA 247 79.32 c.106.1.1 62762 3elsA 158 81.95 1qksA 567 82.10 a.3.1.2,b.70.2.1 15951,27710 3ik2A 517 84.65 1vkyA 347 85.86 e.53.1.1 108696 3f4fA 167 86.98 1t5hX 504 87.60 e.23.1.1 106449 7taa 478 87.63 2fomB 185 87.73 b.47.1.3 133884 2rheA 114 88.93 b.1.1.1 20523 1fitA 147 89.36 d.13.1.1 37499 3iurA 693 89.48 2bklA 695 89.56 3gsnB 243 89.65