# List of top-scoring protein chains for t06-w0.5-1-pb-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://compbio.soe.ucsc.edu/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1tq5A 242 5.69e-15 b.82.1.12 119311 1j1lA 290 9.88e-15 b.82.1.12 90766 2p17A 277 4.39e-14 2h0vA 338 3.88e-13 1sefA 274 1.60e-12 b.82.1.11 105452 2qdrA 303 1.96e-12 2vqaA 361 3.42e-12 1sfnA 246 3.81e-12 b.82.1.11 105496 1juhA 350 4.40e-12 b.82.1.5 71884 1rc6A 261 1.55e-11 b.82.1.11 97287 2phdA 368 4.64e-11 b.82.1.23 149468 2vecA 256 5.20e-11 1j58A 385 1.12e-10 b.82.1.2 71531 2d40A 354 1.22e-10 b.82.1.23 146454 3cjxA 165 1.39e-09 1y3tA 337 1.53e-09 b.82.1.5 122600 3ebrA 159 2.02e-09 2o1qA 145 2.15e-09 b.82.1.21 148547 2e9qA 459 2.73e-09 3c3vA 510 6.37e-09 2q1zB 195 7.99e-09 2d5fA 493 9.83e-09 1vj2A 126 1.02e-08 b.82.1.10 100796 3h7jA 243 1.16e-08 2pfwA 116 1.18e-08 3ibmA 167 1.40e-08 1o4tA 133 1.78e-08 b.82.1.9 86622 3kgzA 156 1.97e-08 3ht1A 145 2.18e-08 1lr5A 163 3.04e-08 b.82.1.2 74215 3l2hA 162 5.04e-08 3i7dA 163 5.22e-08 2qnkA 286 6.29e-08 2oa2A 148 7.73e-08 1v70A 105 9.31e-08 b.82.1.9 113555 2b8mA 117 1.08e-07 b.82.1.18 128092 3cewA 125 1.24e-07 3h8uA 125 1.24e-07 1yhfA 115 1.40e-07 b.82.1.9 123176 3es1A 172 1.62e-07 3fjsA 114 1.67e-07 2ea7A 434 1.83e-07 2q30A 110 3.78e-07 2gu9A 113 4.08e-07 1fi2A 201 4.11e-07 b.82.1.2 59845 3fz3A 531 4.80e-07 2et1A 201 5.36e-07 b.82.1.2 132351 2pytA 133 1.12e-06 b.82.1.24 149957 2gc1A 188 1.68e-06 b.82.1.7 134928 2ozjA 114 2.08e-06 3lagA 98 2.24e-06 1x82A 190 2.46e-06 b.82.1.7 114955 2o8qA 134 2.52e-06 1y9qA 192 2.82e-06 a.35.1.8,b.82.1.15 116592,116593 3eqeA 171 3.13e-06 2f4pA 147 4.00e-06 b.82.1.9 132933 2fqpA 97 4.83e-06 3d82A 102 5.53e-06 2gm6A 208 5.75e-06 b.82.1.19 147130 3lwcA 119 1.38e-05 2b5hA 200 1.43e-05 b.82.1.19 127894 2oziA 98 1.74e-05 1xjaA 178 3.76e-05 b.82.4.1 115382 3bcwA 123 5.15e-05 1zrrA 179 5.15e-05 b.82.1.6 125555 2i45A 107 7.10e-05 1dgwA 178 9.82e-05 b.82.1.2 28090 3g7dA 443 0.000163 3elnA 200 0.000243 b.82.1.19 158185 1yfuA 174 0.000526 b.82.1.20 123094 1vr3A 191 0.000556 b.82.1.6 120431 3esgA 193 0.000851 2bnmA 198 0.000857 a.35.1.3,b.82.1.10 128835,128836 3gbgA 276 0.001933 3d0jA 140 0.002524 2opkA 112 0.003113 1zvfA 176 0.007083 b.82.1.20 146029 1pmi 440 0.008572 2pamA 141 0.03025 b.82.1.1 149348 1qwrA 319 0.03512 b.82.1.3 96491 1pmiA 440 0.05633 b.82.1.3 28114 3es4A 116 0.06987 2pa7A 141 0.07848 b.82.1.1 149339 2vpvA 166 0.1055 3ejkA 174 0.1333 1yllA 200 0.1480 b.82.1.17 123653 3k3oA 371 0.1751 2wwuA 371 0.2184 2vpjA 301 0.2207 1o5uA 101 0.2262 b.82.1.8 92518 2rg4A 216 0.2478 1x2jA 316 0.2518 b.68.11.1 121643 3k2oA 336 0.3071 2arcA 164 0.3429 b.82.4.1 28148 3d8cA 349 0.3827 1vrbA 342 0.4222 b.82.2.11 120450 1e5rA 290 0.5482 b.82.2.4 59276 1zx5A 300 0.5517 b.82.1.3 125763 2yu1A 451 0.7114 3i1cA 324 0.7687 3bb6A 127 0.7943 b.82.2.13 155045 3gqiB 226 0.8839 3fhiB 154 0.9057 2fluX 308 0.9119 b.68.11.1 133750 3lkwA 236 0.9353 1zgkA 308 1.002 b.68.11.1 145998 1h2kA 349 1.023 b.82.2.6 76572 3h1wA 393 1.049 1eybA 471 1.645 b.82.1.4 28115 2uvkA 357 1.924 3dl3A 119 2.040 b.82.2.13 157762 3eo6A 106 2.376 2wfpA 394 2.515 1ep0A 185 2.774 b.82.1.1 28080 3ii7A 306 3.029 3gdcA 288 3.315 2b9uA 176 3.531 3dkqA 243 3.543 1ywkA 289 3.687 b.82.1.13 124155 2z2nA 299 4.588 1q3eA 207 4.905 b.82.3.2 95669 2ixkA 184 5.024 2d93A 134 5.076 1upiA 225 5.533 b.82.1.1 99757 2pia 321 5.538 2fmyA 220 6.821 1wgpA 137 7.495 b.82.3.2 114619 3ixcA 191 7.798 3idbB 161 7.915 2c0zA 216 7.942 b.82.1.1 129615 1oi6A 205 8.212 b.82.1.1 103940 1vp6A 138 8.383 b.82.3.2 113939 2bdrA 175 8.406 b.82.1.14 128342 2h6bA 250 8.775 a.4.5.4,b.82.3.2 147228,147229 2ptmA 198 9.035 2h6cA 232 9.247 a.4.5.4,b.82.3.2 147232,147233 1hw5A 210 9.261 a.4.5.4,b.82.3.2 16098,28137 3e5xA 250 9.362 2fomB 185 9.928 b.47.1.3 133884 1dgwX 79 9.942 b.82.1.2 28091 3dv8A 220 9.96 3l6pA 236 10.09 3bpzA 202 10.42 2piaA 321 11.21 b.43.4.2,c.25.1.2,d.15.4.2 25663,31553,37704 1nxmA 197 11.21 b.82.1.1 86385 2o62A 270 12.02 b.60.1.9,b.60.1.9 148622,148623 2yzjA 169 12.15 2a1xA 308 12.30 b.82.2.9 126022 2we3A 264 12.92 3h3zA 235 13.60 2zooA 442 13.99 3dr2A 305 14.03 1rl3A 288 14.66 b.82.3.2,b.82.3.2 104975,104976 3elsA 158 15.41 1xruA 282 15.53 b.82.1.13 122262 3hqxA 111 16.25 3d0sA 227 16.50 3cf6E 694 16.60 2eg4A 230 17.40 1q7fA 286 17.46 b.68.9.1 96036 3e6cC 250 18.13 a.4.5.4,b.82.3.2 158038,158039 2jkdA 187 18.18 1npeA 267 19.38 b.68.5.1 92032 2ghsA 326 19.39 b.68.6.1 135209 1xsqA 168 20.03 b.82.1.14 115999 2opwA 291 20.76 3ggqA 149 20.79 2qjvA 270 20.85 1pjxA 314 21.04 b.68.6.1 104167 2oyzA 94 21.12 b.82.1.22 149082 2pqqA 149 21.82 1a62A 130 21.90 a.140.3.1,b.40.4.5 64708,64709 2wozA 318 22.02 1rwiA 270 23.28 b.68.9.1 97987 1zybA 232 23.47 a.4.5.4,b.82.3.2 125815,125816 3fx3A 237 23.92 2zdbA 195 24.32 3dn7A 194 25.45 1mpxA 615 25.72 b.18.1.13,c.69.1.21 85041,85042 2gauA 232 26.28 a.4.5.4,b.82.3.2 134894,134895 3gydA 187 26.30 1crzA 403 26.30 b.68.4.1,c.51.2.1 27629,33211 3e97A 231 26.31 2we2A 286 26.69 3g5wA 318 29.86 1iuzA 98 30.28 b.6.1.1 22861 2fp7B 172 30.70 b.47.1.3 133899 2zcwA 202 31.13 3fgbA 361 31.60 2qc5A 300 32.26 1dabA 539 32.34 b.80.1.7 28049 2gopA 347 32.40 1xhdA 173 32.46 b.81.1.5 115295 1o7fA 469 32.68 a.4.5.31,b.82.3.2,b.82.3.2 81131,81132,81133 2cohA 202 33.21 a.4.5.4,b.82.3.2 130677,130678 2zwnA 339 33.34 1aozA 552 33.46 b.6.1.3,b.6.1.3,b.6.1.3 23124,23125,23126 3c5mA 396 34.21 2we0A 286 34.67 1dgwY 93 35.11 3hfqA 347 35.47 1ag6A 99 40.06 b.6.1.1 22857 3cg8A 343 41.49 1id2A 106 41.60 b.6.1.1 62288 3immA 201 42.07 3lydA 161 43.25 1v3wA 173 47.08 b.81.1.5 100291 2f15A 96 48.05 b.1.18.21 146993 3frxA 319 48.32 3kvcA 533 49.20 1snzA 344 49.77 b.30.5.4 98930 3m6sA 331 50.89 2bsyA 278 51.63 b.85.4.1,b.85.4.1 129129,129130 3g4eA 297 51.76 2f6eA 127 52.80 1uaiA 224 53.84 b.29.1.18 107761 3g7sA 549 54.51 2z69A 154 54.78 1chdA 203 54.95 c.40.1.1 32478 3llpA 493 55.05 1kbvA 327 55.74 b.6.1.3,b.6.1.3 68395,68396 2bgcA 238 55.89 a.4.5.4,b.82.3.3 128458,128459 2r9qA 370 56.43 2bklA 695 56.47 1s4cA 155 56.66 b.82.2.7 118860 3dhvA 512 56.82 2wv3A 190 58.40 1q90A 292 58.49 b.2.6.1,b.84.2.2,f.23.23.1 96238,96239,96240 2jf2A 264 59.64 b.81.1.1 138289 2rheA 114 61.30 b.1.1.1 20523 2ae5B 528 61.61 1chd 203 62.63 1uz8B 212 62.69 b.1.1.1,b.1.1.2 108168,108169 1kjlA 146 62.86 b.29.1.3 118689 1mzyA 333 63.87 b.6.1.3,b.6.1.3 103848,103849 3h6xA 148 64.26 2aq9A 262 64.57 b.81.1.1 127167 3cfuA 159 65.31 2q6fA 309 65.58 2c5qA 240 65.64 2pndA 119 65.72 1jsdA 319 66.02 b.19.1.2 63258 3li3A 314 66.56 1ofzA 312 67.23 b.68.8.1 86978 2ih8A 559 67.79 b.6.1.3,b.6.1.3,b.6.1.3 137407,137408,137409 3lhnA 126 69.31 2v4nA 254 69.37 1plc 99 71.70 3g7gA 158 71.94 1wstA 417 73.51 c.67.1.1 121244 1ru4A 400 73.69 b.80.1.9 97836 2jmzA 186 74.03 1qreA 247 74.30 b.81.1.5 28066 1v10A 521 74.65 b.6.1.3,b.6.1.3,b.6.1.3 108224,108225,108226 2ichA 335 75.77 b.176.1.1 147602 1hcdA 118 76.04 b.42.5.2 25624 3km3A 206 78.41 3emrA 310 78.51 2vxsH 225 79.01 3gd7A 390 79.86 2psbA 320 80.82 c.153.1.1 149819 2i2cA 272 81.84 2hqsA 415 82.51 b.68.4.1,c.51.2.1 136662,136663 2gk2A 111 82.54 3dfuA 232 82.79 1rydA 387 85.15 c.2.1.3,d.81.1.5 118801,118802 1qfhA 212 85.49 b.1.18.10,b.1.18.10 21893,21894 1shxA 138 86.12 b.6.1.5 118962 3bwsA 433 86.26 1c3gA 170 86.39 b.4.1.1,b.4.1.1 22831,22832 1u6lA 149 86.72 d.32.1.7 113067 1x9lA 149 86.83 b.2.10.1 109528 1i3zA 103 87.00 d.93.1.1 83667 1plcA 99 88.18 b.6.1.1 22846 1jxgA 100 88.53 b.6.1.1 67413 2hbtA 247 88.68 2aujD 309 88.90 1u2eA 289 89.83