# List of top-scoring protein chains for t06-w0.5-1-o_sep-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://compbio.soe.ucsc.edu/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1tq5A 242 1.30e-18 b.82.1.12 119311 1j1lA 290 3.15e-18 b.82.1.12 90766 2p17A 277 5.17e-18 2h0vA 338 4.10e-16 2qdrA 303 6.73e-16 1juhA 350 2.60e-15 b.82.1.5 71884 2vqaA 361 1.04e-14 1sfnA 246 1.49e-14 b.82.1.11 105496 1sefA 274 1.82e-14 b.82.1.11 105452 1rc6A 261 1.84e-13 b.82.1.11 97287 2phdA 368 2.59e-13 b.82.1.23 149468 2vecA 256 7.43e-13 1j58A 385 1.02e-12 b.82.1.2 71531 2d40A 354 4.14e-12 b.82.1.23 146454 2o1qA 145 8.78e-12 b.82.1.21 148547 3ebrA 159 1.97e-11 3cjxA 165 2.40e-11 2q1zB 195 4.95e-11 3ibmA 167 5.12e-11 3c3vA 510 7.50e-11 2e9qA 459 1.05e-10 3kgzA 156 1.26e-10 3ht1A 145 1.27e-10 2pfwA 116 1.28e-10 1vj2A 126 1.65e-10 b.82.1.10 100796 1y3tA 337 1.96e-10 b.82.1.5 122600 1lr5A 163 2.08e-10 b.82.1.2 74215 3l2hA 162 2.62e-10 3h7jA 243 3.25e-10 2qnkA 286 3.41e-10 1o4tA 133 3.86e-10 b.82.1.9 86622 2oa2A 148 4.52e-10 2d5fA 493 4.75e-10 3fjsA 114 6.82e-10 3i7dA 163 7.50e-10 1yhfA 115 8.55e-10 b.82.1.9 123176 3cewA 125 8.76e-10 3h8uA 125 1.11e-09 1v70A 105 1.21e-09 b.82.1.9 113555 3es1A 172 1.96e-09 2b8mA 117 2.78e-09 b.82.1.18 128092 2q30A 110 6.77e-09 2gu9A 113 7.77e-09 1fi2A 201 9.96e-09 b.82.1.2 59845 2et1A 201 1.62e-08 b.82.1.2 132351 2ozjA 114 1.97e-08 2gc1A 188 2.61e-08 b.82.1.7 134928 1x82A 190 2.67e-08 b.82.1.7 114955 2ea7A 434 2.79e-08 3fz3A 531 2.93e-08 2pytA 133 3.04e-08 b.82.1.24 149957 3lagA 98 3.09e-08 2o8qA 134 3.15e-08 1y9qA 192 7.15e-08 a.35.1.8,b.82.1.15 116592,116593 3d82A 102 9.07e-08 2fqpA 97 1.06e-07 3eqeA 171 1.41e-07 2f4pA 147 2.47e-07 b.82.1.9 132933 3lwcA 119 3.99e-07 2gm6A 208 5.15e-07 b.82.1.19 147130 2oziA 98 7.26e-07 1zrrA 179 9.60e-07 b.82.1.6 125555 1xjaA 178 2.02e-06 b.82.4.1 115382 3bcwA 123 2.65e-06 2b5hA 200 3.76e-06 b.82.1.19 127894 2i45A 107 4.54e-06 3g7dA 443 8.28e-06 1dgwA 178 1.32e-05 b.82.1.2 28090 1yfuA 174 3.57e-05 b.82.1.20 123094 2bnmA 198 6.58e-05 a.35.1.3,b.82.1.10 128835,128836 3elnA 200 0.000113 b.82.1.19 158185 3gbgA 276 0.000130 1vr3A 191 0.000265 b.82.1.6 120431 2opkA 112 0.000429 3d0jA 140 0.000468 3esgA 193 0.000779 1zvfA 176 0.000895 b.82.1.20 146029 1pmi 440 0.002138 2pamA 141 0.005820 b.82.1.1 149348 3es4A 116 0.01009 2pa7A 141 0.01025 b.82.1.1 149339 1qwrA 319 0.01613 b.82.1.3 96491 2vpvA 166 0.03005 1pmiA 440 0.04423 b.82.1.3 28114 3ejkA 174 0.06168 1o5uA 101 0.06882 b.82.1.8 92518 3k3oA 371 0.1040 1vrbA 342 0.1504 b.82.2.11 120450 1yllA 200 0.1655 b.82.1.17 123653 2wwuA 371 0.1665 3fhiB 154 0.2365 1zx5A 300 0.2558 b.82.1.3 125763 3i1cA 324 0.3157 3d8cA 349 0.4012 2arcA 164 0.5784 b.82.4.1 28148 1e5rA 290 0.7365 b.82.2.4 59276 2yu1A 451 0.7377 3h1wA 393 0.8733 2rg4A 216 1.120 3k2oA 336 1.198 2o62A 270 1.237 b.60.1.9,b.60.1.9 148622,148623 3bb6A 127 1.322 b.82.2.13 155045 1q3eA 207 1.333 b.82.3.2 95669 1h2kA 349 1.645 b.82.2.6 76572 1rl3A 288 1.781 b.82.3.2,b.82.3.2 104975,104976 3idbB 161 1.797 2d93A 134 1.809 2fmyA 220 2.113 3dl3A 119 2.254 b.82.2.13 157762 3lkwA 236 2.274 3eo6A 106 2.671 3gqiB 226 3.184 2bdrA 175 3.216 b.82.1.14 128342 1o7fA 469 3.283 a.4.5.31,b.82.3.2,b.82.3.2 81131,81132,81133 2vpjA 301 3.447 2ptmA 198 4.567 3bpzA 202 4.682 1vp6A 138 4.884 b.82.3.2 113939 1upiA 225 5.477 b.82.1.1 99757 1pjxA 314 5.946 b.68.6.1 104167 2pia 321 6.147 1npeA 267 6.243 b.68.5.1 92032 1ep0A 185 6.286 b.82.1.1 28080 1x2jA 316 6.361 b.68.11.1 121643 1hw5A 210 6.513 a.4.5.4,b.82.3.2 16098,28137 3dkqA 243 6.527 2b9uA 176 6.568 2fluX 308 7.342 b.68.11.1 133750 1eybA 471 8.697 b.82.1.4 28115 1mpxA 615 8.815 b.18.1.13,c.69.1.21 85041,85042 1oi6A 205 9.246 b.82.1.1 103940 2qvsB 310 9.385 2ixkA 184 10.09 2wfpA 394 10.19 3hqxA 111 11.92 2c0zA 216 12.23 b.82.1.1 129615 3e5xA 250 12.45 3l6pA 236 12.79 1zybA 232 12.95 a.4.5.4,b.82.3.2 125815,125816 2piaA 321 13.46 b.43.4.2,c.25.1.2,d.15.4.2 25663,31553,37704 3gdcA 288 14.23 1zgkA 308 14.41 b.68.11.1 145998 3e6cC 250 14.67 a.4.5.4,b.82.3.2 158038,158039 2v4nA 254 15.44 1wgpA 137 15.63 b.82.3.2 114619 2gauA 232 15.87 a.4.5.4,b.82.3.2 134894,134895 1xsqA 168 15.92 b.82.1.14 115999 3e97A 231 16.27 3cf6E 694 16.37 2h6bA 250 16.73 a.4.5.4,b.82.3.2 147228,147229 1nxmA 197 17.17 b.82.1.1 86385 2bklA 695 18.71 2h6cA 232 18.94 a.4.5.4,b.82.3.2 147232,147233 2phjA 251 19.68 1a0tP 413 20.57 f.4.3.2 43794 2pqqA 149 20.82 3gydA 187 20.89 3g1pA 258 21.25 2uvkA 357 21.70 3h3zA 235 21.99 3lhnA 126 22.01 2wqkA 251 22.20 2jkdA 187 22.29 3li4A 314 22.65 3ii7A 306 22.77 2vrqA 496 22.90 3d0sA 227 22.94 2fp8A 322 24.07 3elsA 158 25.78 1rydA 387 25.89 c.2.1.3,d.81.1.5 118801,118802 1dgwX 79 26.01 b.82.1.2 28091 1a62A 130 28.00 a.140.3.1,b.40.4.5 64708,64709 1f46A 140 28.37 d.129.4.1 59643 2we3A 264 29.89 2bgiA 272 30.13 1mdaH 368 31.11 b.69.2.1 27637 3e7jA 749 32.09 3dv8A 220 32.93 1snzA 344 32.99 b.30.5.4 98930 2ichA 335 33.14 b.176.1.1 147602 3bwsA 433 33.19 3fgbA 361 33.35 2zcwA 202 34.61 2oyzA 94 34.81 b.82.1.22 149082 1crzA 403 36.37 b.68.4.1,c.51.2.1 27629,33211 2wozA 318 37.35 3cqdA 309 39.50 1wzaA 488 40.89 b.71.1.1,c.1.8.1 121489,121490 2zdbA 195 41.72 3fx3A 237 41.89 2cohA 202 42.42 a.4.5.4,b.82.3.2 130677,130678 1z2wA 192 44.51 d.159.1.7 124390 3lydA 161 46.46 1ru4A 400 49.62 b.80.1.9 97836 2bjfA 329 50.59 1iz6A 138 51.23 b.34.5.2,b.40.4.5 76976,76977 1qksA 567 51.79 a.3.1.2,b.70.2.1 15951,27710 3e17A 88 52.11 3idaA 587 52.73 1iakA 199 53.01 b.1.1.2,d.19.1.1 21625,38199 1u6lA 149 53.83 d.32.1.7 113067 2a1xA 308 54.09 b.82.2.9 126022 2opwA 291 54.76 2wanA 921 56.08 1q7fA 286 56.66 b.68.9.1 96036 3hxjA 330 56.75 2eg4A 230 58.70 1ywkA 289 59.04 b.82.1.13 124155 3fd4A 191 62.57 2w08A 204 62.86 1i3zA 103 63.69 d.93.1.1 83667 2f15A 96 64.26 b.1.18.21 146993 1rwiA 270 65.00 b.68.9.1 97987 3ck2A 176 65.48 d.159.1.7 156724 2gpyA 233 67.71 2gc7A 386 67.79 b.69.2.1 134954 1j9lA 247 67.80 c.106.1.1 62762 2de6A 392 70.14 b.33.1.2,d.129.3.3 131415,131416 1c1lA 136 70.56 b.29.1.3 24219 1x9lA 149 71.39 b.2.10.1 109528 2z69A 154 71.47 1aym1 285 73.69 2r9qA 370 74.23 3dr2A 305 75.60 3dn7A 194 77.03 3etcA 580 79.96 2h6lA 146 80.07 d.290.1.3 136197 2ajtA 500 80.29 b.43.2.2,c.85.1.2 126894,126895 3ip3A 337 81.18 2ghsA 326 82.76 b.68.6.1 135209 3dczA 207 83.87 2ok8A 316 84.44 2odlA 373 86.30 3g4eA 297 87.42 1h5bB 113 87.86 b.1.1.1 60639 2psbA 320 88.42 c.153.1.1 149819 3g7gA 158 89.30 3cihA 739 89.31 3c9zA 258 89.33