# List of top-scoring protein chains for t06-w0.5-1-o_notor2-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://compbio.soe.ucsc.edu/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1tq5A 242 1.33e-19 b.82.1.12 119311 1j1lA 290 4.34e-19 b.82.1.12 90766 2p17A 277 5.34e-19 2h0vA 338 8.77e-17 2qdrA 303 1.55e-16 1juhA 350 4.28e-16 b.82.1.5 71884 2vqaA 361 2.80e-15 1sfnA 246 3.43e-15 b.82.1.11 105496 1sefA 274 5.14e-15 b.82.1.11 105452 2phdA 368 5.55e-14 b.82.1.23 149468 1rc6A 261 6.08e-14 b.82.1.11 97287 2vecA 256 2.05e-13 1j58A 385 2.91e-13 b.82.1.2 71531 2d40A 354 1.09e-12 b.82.1.23 146454 2o1qA 145 2.94e-12 b.82.1.21 148547 3ebrA 159 6.39e-12 3cjxA 165 6.71e-12 3ibmA 167 1.44e-11 3c3vA 510 1.79e-11 2q1zB 195 2.22e-11 2e9qA 459 2.95e-11 3ht1A 145 3.83e-11 3kgzA 156 4.64e-11 1vj2A 126 5.21e-11 b.82.1.10 100796 2pfwA 116 6.40e-11 1lr5A 163 6.73e-11 b.82.1.2 74215 1y3tA 337 7.33e-11 b.82.1.5 122600 3l2hA 162 8.57e-11 3h7jA 243 8.96e-11 2qnkA 286 1.09e-10 2d5fA 493 1.37e-10 2oa2A 148 1.43e-10 1o4tA 133 1.52e-10 b.82.1.9 86622 3i7dA 163 2.14e-10 3fjsA 114 2.20e-10 1yhfA 115 2.71e-10 b.82.1.9 123176 3cewA 125 3.87e-10 3h8uA 125 4.14e-10 1v70A 105 5.22e-10 b.82.1.9 113555 3es1A 172 6.25e-10 2b8mA 117 9.37e-10 b.82.1.18 128092 2q30A 110 2.63e-09 1fi2A 201 2.71e-09 b.82.1.2 59845 2et1A 201 4.59e-09 b.82.1.2 132351 2gu9A 113 4.98e-09 2o8qA 134 7.64e-09 3fz3A 531 7.91e-09 2ozjA 114 8.32e-09 2gc1A 188 9.67e-09 b.82.1.7 134928 3lagA 98 1.05e-08 2ea7A 434 1.11e-08 2pytA 133 1.14e-08 b.82.1.24 149957 1x82A 190 1.24e-08 b.82.1.7 114955 1y9qA 192 2.95e-08 a.35.1.8,b.82.1.15 116592,116593 3d82A 102 3.95e-08 2fqpA 97 3.95e-08 3eqeA 171 7.10e-08 2f4pA 147 1.12e-07 b.82.1.9 132933 3lwcA 119 1.45e-07 2gm6A 208 2.12e-07 b.82.1.19 147130 2oziA 98 3.58e-07 1zrrA 179 4.36e-07 b.82.1.6 125555 1xjaA 178 9.21e-07 b.82.4.1 115382 3bcwA 123 1.10e-06 2i45A 107 2.11e-06 2b5hA 200 2.41e-06 b.82.1.19 127894 3g7dA 443 4.01e-06 1dgwA 178 7.06e-06 b.82.1.2 28090 1yfuA 174 1.83e-05 b.82.1.20 123094 2bnmA 198 3.15e-05 a.35.1.3,b.82.1.10 128835,128836 3elnA 200 6.38e-05 b.82.1.19 158185 3gbgA 276 7.39e-05 1vr3A 191 0.000136 b.82.1.6 120431 3d0jA 140 0.000262 2opkA 112 0.000263 1zvfA 176 0.000433 b.82.1.20 146029 3esgA 193 0.000774 1pmi 440 0.001070 2pamA 141 0.003452 b.82.1.1 149348 2pa7A 141 0.005947 b.82.1.1 149339 3es4A 116 0.007791 1qwrA 319 0.01595 b.82.1.3 96491 2vpvA 166 0.01793 1pmiA 440 0.02304 b.82.1.3 28114 3ejkA 174 0.03242 3k3oA 371 0.04546 1o5uA 101 0.05548 b.82.1.8 92518 1vrbA 342 0.05821 b.82.2.11 120450 2wwuA 371 0.08314 1yllA 200 0.1081 b.82.1.17 123653 1zx5A 300 0.1503 b.82.1.3 125763 3fhiB 154 0.1546 3d8cA 349 0.1631 3i1cA 324 0.3439 2yu1A 451 0.4360 2arcA 164 0.4723 b.82.4.1 28148 3h1wA 393 0.4838 1e5rA 290 0.5301 b.82.2.4 59276 2rg4A 216 0.7196 1q3eA 207 0.7529 b.82.3.2 95669 1h2kA 349 0.7686 b.82.2.6 76572 3k2oA 336 0.9252 3bb6A 127 0.9292 b.82.2.13 155045 1rl3A 288 1.201 b.82.3.2,b.82.3.2 104975,104976 1o7fA 469 1.306 a.4.5.31,b.82.3.2,b.82.3.2 81131,81132,81133 3idbB 161 1.337 3dl3A 119 1.483 b.82.2.13 157762 2d93A 134 1.961 3eo6A 106 1.972 2fmyA 220 2.245 2bdrA 175 2.336 b.82.1.14 128342 3lkwA 236 2.403 2o62A 270 2.807 b.60.1.9,b.60.1.9 148622,148623 2ptmA 198 2.912 3bpzA 202 3.082 3gqiB 226 3.125 1upiA 225 3.202 b.82.1.1 99757 1ep0A 185 3.500 b.82.1.1 28080 1vp6A 138 4.202 b.82.3.2 113939 2b9uA 176 4.894 1mpxA 615 4.951 b.18.1.13,c.69.1.21 85041,85042 2qvsB 310 5.006 2pia 321 5.394 1hw5A 210 5.538 a.4.5.4,b.82.3.2 16098,28137 1oi6A 205 5.551 b.82.1.1 103940 1eybA 471 5.665 b.82.1.4 28115 2ixkA 184 5.697 2vpjA 301 5.721 3dkqA 243 6.916 2c0zA 216 7.707 b.82.1.1 129615 1zybA 232 7.953 a.4.5.4,b.82.3.2 125815,125816 1xsqA 168 8.892 b.82.1.14 115999 2v4nA 254 10.17 1wgpA 137 10.50 b.82.3.2 114619 1nxmA 197 10.58 b.82.1.1 86385 3l6pA 236 11.12 3hqxA 111 11.89 1x2jA 316 12.68 b.68.11.1 121643 1rydA 387 12.73 c.2.1.3,d.81.1.5 118801,118802 2phjA 251 13.01 1pjxA 314 13.25 b.68.6.1 104167 2piaA 321 13.28 b.43.4.2,c.25.1.2,d.15.4.2 25663,31553,37704 3gdcA 288 13.28 3e5xA 250 13.30 2gauA 232 13.52 a.4.5.4,b.82.3.2 134894,134895 2fp8A 322 14.17 3e7jA 749 14.41 2wqkA 251 14.70 2wfpA 394 14.83 3lhnA 126 15.73 3h3zA 235 17.00 1dgwX 79 17.28 b.82.1.2 28091 3e97A 231 17.47 2h6bA 250 17.80 a.4.5.4,b.82.3.2 147228,147229 3cf6E 694 18.59 3gydA 187 18.60 1npeA 267 18.99 b.68.5.1 92032 2pqqA 149 19.05 1zgkA 308 19.29 b.68.11.1 145998 3e6cC 250 19.33 a.4.5.4,b.82.3.2 158038,158039 2fluX 308 19.67 b.68.11.1 133750 2jkdA 187 20.48 1f46A 140 20.97 d.129.4.1 59643 2h6cA 232 21.50 a.4.5.4,b.82.3.2 147232,147233 3d0sA 227 22.44 2we3A 264 24.26 3ii7A 306 25.75 3fd4A 191 26.04 2uvkA 357 27.04 1iakA 199 29.96 b.1.1.2,d.19.1.1 21625,38199 2oyzA 94 30.47 b.82.1.22 149082 2zcwA 202 31.58 2bgiA 272 31.75 3dv8A 220 31.94 1snzA 344 32.25 b.30.5.4 98930 2r9qA 370 34.68 3fx3A 237 35.02 1a0tP 413 35.48 f.4.3.2 43794 2opwA 291 35.57 2f15A 96 36.43 b.1.18.21 146993 2cohA 202 36.56 a.4.5.4,b.82.3.2 130677,130678 3e17A 88 36.71 1a62A 130 36.86 a.140.3.1,b.40.4.5 64708,64709 3g1pA 258 37.14 3idaA 587 37.55 1mdaH 368 37.61 b.69.2.1 27637 1ru4A 400 37.65 b.80.1.9 97836 2vrqA 496 38.96 3lydA 161 40.95 3elsA 158 41.13 1i3zA 103 43.38 d.93.1.1 83667 3li4A 314 44.42 1j9lA 247 45.65 c.106.1.1 62762 1x9lA 149 46.17 b.2.10.1 109528 2bklA 695 47.87 1iz6A 138 48.76 b.34.5.2,b.40.4.5 76976,76977 2zdbA 195 49.23 2gpyA 233 49.55 2a1xA 308 51.01 b.82.2.9 126022 2fyqA 194 51.09 2eg4A 230 51.34 2de6A 392 51.90 b.33.1.2,d.129.3.3 131415,131416 3etcA 580 53.19 3bwsA 433 57.88 1wzaA 488 59.07 b.71.1.1,c.1.8.1 121489,121490 3dhvA 512 62.20 3dczA 207 62.35 2z69A 154 63.04 2ok8A 316 64.74 2wanA 921 65.62 2pndA 119 65.83 1uvqA 197 69.33 b.1.1.2,d.19.1.1 100062,100063 3itqA 216 69.62 1u6lA 149 70.42 d.32.1.7 113067 1c1lA 136 70.96 b.29.1.3 24219 3ck2A 176 71.47 d.159.1.7 156724 2ichA 335 71.82 b.176.1.1 147602 3dn7A 194 72.34 1aozA 552 72.48 b.6.1.3,b.6.1.3,b.6.1.3 23124,23125,23126 3floA 460 73.11 1o5lA 213 73.28 b.82.3.2 92506 2yxxA 386 74.04 3htnA 149 74.45 2ajtA 500 74.46 b.43.2.2,c.85.1.2 126894,126895 1fitA 147 75.63 d.13.1.1 37499 1ywkA 289 76.66 b.82.1.13 124155 1dgwY 93 76.92 1qksA 567 79.29 a.3.1.2,b.70.2.1 15951,27710 2bjfA 329 79.41 3h3lA 241 79.82 3dtyA 398 79.90 3g5wA 318 83.23 1aym1 285 83.31 3ec7A 357 83.51 3czgA 644 84.24 1z2wA 192 85.46 d.159.1.7 124390 1ro0A 216 87.24 d.264.1.2 97664