# List of top-scoring protein chains for t06-w0.5-1-o_notor-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://compbio.soe.ucsc.edu/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1tq5A 242 1.08e-18 b.82.1.12 119311 1j1lA 290 2.21e-18 b.82.1.12 90766 2p17A 277 2.98e-18 2h0vA 338 4.14e-16 2qdrA 303 6.78e-16 1juhA 350 2.31e-15 b.82.1.5 71884 2vqaA 361 9.82e-15 1sfnA 246 1.33e-14 b.82.1.11 105496 1sefA 274 1.40e-14 b.82.1.11 105452 1rc6A 261 2.17e-13 b.82.1.11 97287 2phdA 368 2.37e-13 b.82.1.23 149468 1j58A 385 7.63e-13 b.82.1.2 71531 2vecA 256 7.71e-13 2d40A 354 4.26e-12 b.82.1.23 146454 2o1qA 145 8.98e-12 b.82.1.21 148547 3ebrA 159 2.07e-11 3cjxA 165 2.27e-11 3ibmA 167 5.16e-11 3c3vA 510 5.30e-11 2q1zB 195 5.56e-11 2e9qA 459 6.85e-11 3ht1A 145 1.14e-10 3kgzA 156 1.34e-10 1vj2A 126 1.45e-10 b.82.1.10 100796 1y3tA 337 1.63e-10 b.82.1.5 122600 2pfwA 116 1.71e-10 1lr5A 163 2.28e-10 b.82.1.2 74215 3h7jA 243 2.32e-10 3l2hA 162 2.41e-10 2qnkA 286 2.75e-10 2d5fA 493 3.54e-10 2oa2A 148 4.39e-10 1o4tA 133 4.70e-10 b.82.1.9 86622 3i7dA 163 6.32e-10 3fjsA 114 6.41e-10 1yhfA 115 8.32e-10 b.82.1.9 123176 3cewA 125 9.60e-10 3h8uA 125 1.06e-09 1v70A 105 1.43e-09 b.82.1.9 113555 3es1A 172 1.77e-09 2b8mA 117 2.30e-09 b.82.1.18 128092 2q30A 110 6.62e-09 1fi2A 201 7.86e-09 b.82.1.2 59845 2gu9A 113 1.22e-08 2et1A 201 1.33e-08 b.82.1.2 132351 3fz3A 531 1.65e-08 2o8qA 134 1.86e-08 2pytA 133 1.96e-08 b.82.1.24 149957 2ozjA 114 2.00e-08 2gc1A 188 2.07e-08 b.82.1.7 134928 2ea7A 434 2.07e-08 1x82A 190 2.25e-08 b.82.1.7 114955 3lagA 98 2.95e-08 1y9qA 192 6.20e-08 a.35.1.8,b.82.1.15 116592,116593 3d82A 102 9.73e-08 2fqpA 97 1.08e-07 3eqeA 171 1.38e-07 2f4pA 147 2.73e-07 b.82.1.9 132933 3lwcA 119 3.37e-07 2gm6A 208 4.83e-07 b.82.1.19 147130 2oziA 98 8.73e-07 1zrrA 179 1.15e-06 b.82.1.6 125555 1xjaA 178 1.60e-06 b.82.4.1 115382 3bcwA 123 2.04e-06 2b5hA 200 3.78e-06 b.82.1.19 127894 2i45A 107 4.19e-06 3g7dA 443 5.49e-06 1dgwA 178 1.06e-05 b.82.1.2 28090 1yfuA 174 3.56e-05 b.82.1.20 123094 2bnmA 198 5.61e-05 a.35.1.3,b.82.1.10 128835,128836 3gbgA 276 9.75e-05 3elnA 200 0.000106 b.82.1.19 158185 1vr3A 191 0.000288 b.82.1.6 120431 2opkA 112 0.000440 3d0jA 140 0.000598 1zvfA 176 0.000760 b.82.1.20 146029 3esgA 193 0.001096 1pmi 440 0.001293 2pamA 141 0.005748 b.82.1.1 149348 3es4A 116 0.009022 2pa7A 141 0.009270 b.82.1.1 149339 1qwrA 319 0.02179 b.82.1.3 96491 2vpvA 166 0.02656 1pmiA 440 0.02840 b.82.1.3 28114 3ejkA 174 0.05183 3k3oA 371 0.05903 1vrbA 342 0.07414 b.82.2.11 120450 1o5uA 101 0.07643 b.82.1.8 92518 2wwuA 371 0.08242 1yllA 200 0.1295 b.82.1.17 123653 3fhiB 154 0.2010 1zx5A 300 0.2118 b.82.1.3 125763 3d8cA 349 0.2596 2yu1A 451 0.3991 2arcA 164 0.6442 b.82.4.1 28148 3h1wA 393 0.6468 1e5rA 290 0.6540 b.82.2.4 59276 3i1cA 324 0.8283 1q3eA 207 1.027 b.82.3.2 95669 1h2kA 349 1.178 b.82.2.6 76572 3k2oA 336 1.198 2rg4A 216 1.224 1rl3A 288 1.477 b.82.3.2,b.82.3.2 104975,104976 3bb6A 127 1.605 b.82.2.13 155045 3idbB 161 1.626 1o7fA 469 1.629 a.4.5.31,b.82.3.2,b.82.3.2 81131,81132,81133 2o62A 270 1.813 b.60.1.9,b.60.1.9 148622,148623 3eo6A 106 2.093 2d93A 134 2.394 2fmyA 220 2.491 3dl3A 119 2.573 b.82.2.13 157762 2bdrA 175 2.692 b.82.1.14 128342 3gqiB 226 2.747 3lkwA 236 3.333 2ptmA 198 3.590 1upiA 225 3.767 b.82.1.1 99757 3bpzA 202 3.971 1vp6A 138 4.099 b.82.3.2 113939 2qvsB 310 4.268 2vpjA 301 4.453 1ep0A 185 4.761 b.82.1.1 28080 1eybA 471 5.655 b.82.1.4 28115 2pia 321 6.060 1mpxA 615 6.345 b.18.1.13,c.69.1.21 85041,85042 3dkqA 243 6.438 1oi6A 205 6.652 b.82.1.1 103940 2ixkA 184 7.094 1hw5A 210 7.164 a.4.5.4,b.82.3.2 16098,28137 2c0zA 216 8.411 b.82.1.1 129615 2b9uA 176 9.258 1zybA 232 11.52 a.4.5.4,b.82.3.2 125815,125816 2v4nA 254 11.74 2wfpA 394 12.42 1x2jA 316 12.47 b.68.11.1 121643 3hqxA 111 13.08 1wgpA 137 13.42 b.82.3.2 114619 2fluX 308 13.46 b.68.11.1 133750 2gauA 232 13.73 a.4.5.4,b.82.3.2 134894,134895 1nxmA 197 14.23 b.82.1.1 86385 1zgkA 308 14.63 b.68.11.1 145998 2wqkA 251 14.71 1xsqA 168 15.51 b.82.1.14 115999 2piaA 321 15.65 b.43.4.2,c.25.1.2,d.15.4.2 25663,31553,37704 2phjA 251 16.20 3l6pA 236 17.08 2uvkA 357 17.16 3cf6E 694 17.30 1rydA 387 17.43 c.2.1.3,d.81.1.5 118801,118802 3e5xA 250 18.13 3e97A 231 18.37 3lhnA 126 18.78 3h3zA 235 19.18 3gdcA 288 19.70 1dgwX 79 20.07 b.82.1.2 28091 2we3A 264 20.27 3e7jA 749 20.51 3e6cC 250 20.86 a.4.5.4,b.82.3.2 158038,158039 2pqqA 149 22.44 2h6bA 250 22.82 a.4.5.4,b.82.3.2 147228,147229 2fp8A 322 22.90 3ii7A 306 23.55 1snzA 344 24.42 b.30.5.4 98930 1pjxA 314 25.98 b.68.6.1 104167 3gydA 187 26.90 2h6cA 232 27.21 a.4.5.4,b.82.3.2 147232,147233 2bgiA 272 28.06 1a0tP 413 28.72 f.4.3.2 43794 3d0sA 227 28.91 2jkdA 187 29.46 1f46A 140 29.48 d.129.4.1 59643 1iakA 199 30.07 b.1.1.2,d.19.1.1 21625,38199 1npeA 267 30.07 b.68.5.1 92032 2oyzA 94 30.45 b.82.1.22 149082 2vrqA 496 30.72 3g1pA 258 32.44 2r9qA 370 33.64 2zcwA 202 36.09 1ru4A 400 36.45 b.80.1.9 97836 2f15A 96 38.08 b.1.18.21 146993 2cohA 202 38.71 a.4.5.4,b.82.3.2 130677,130678 2bklA 695 38.79 1a62A 130 39.46 a.140.3.1,b.40.4.5 64708,64709 1iz6A 138 40.12 b.34.5.2,b.40.4.5 76976,76977 3dv8A 220 40.23 1j9lA 247 42.54 c.106.1.1 62762 3e17A 88 42.68 3fx3A 237 43.78 1wzaA 488 47.81 b.71.1.1,c.1.8.1 121489,121490 2a1xA 308 48.60 b.82.2.9 126022 3fd4A 191 48.64 2opwA 291 49.04 2fyqA 194 50.72 1mdaH 368 50.87 b.69.2.1 27637 3elsA 158 51.19 1qksA 567 52.12 a.3.1.2,b.70.2.1 15951,27710 2wanA 921 53.84 1i3zA 103 54.04 d.93.1.1 83667 2gpyA 233 56.68 3cqdA 309 57.27 1x9lA 149 58.07 b.2.10.1 109528 1n1tA 641 59.55 b.29.1.15,b.68.1.1 79821,79822 2de6A 392 61.60 b.33.1.2,d.129.3.3 131415,131416 3k4nA 623 62.09 2yxxA 386 63.31 2ok8A 316 65.15 1fitA 147 65.61 d.13.1.1 37499 2zdbA 195 66.22 3li4A 314 66.43 1u6lA 149 68.60 d.32.1.7 113067 2z69A 154 70.34 1uvqA 197 70.59 b.1.1.2,d.19.1.1 100062,100063 3floA 460 71.63 3idaA 587 71.82 3dhvA 512 71.89 1aym1 285 72.19 3lydA 161 74.16 3etcA 580 74.73 3htnA 149 77.04 2pndA 119 77.58 3dczA 207 77.63 1fit 147 78.02 3c9zA 258 78.84 3bwsA 433 79.07 2wozA 318 80.82 2glxA 332 83.01 1jjtA 228 83.13 d.157.1.1 63139 1ywkA 289 84.46 b.82.1.13 124155 3czgA 644 84.58 3dtyA 398 84.83 2qjvA 270 86.29 3c5jA 181 86.67 1o5lA 213 89.66 b.82.3.2 92506