# List of top-scoring protein chains for t06-w0.5-1-near-backbone-11-0.3-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://compbio.soe.ucsc.edu/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1tq5A 242 6.91e-23 b.82.1.12 119311 1j1lA 290 1.49e-22 b.82.1.12 90766 2p17A 277 5.60e-22 2qdrA 303 2.23e-19 2h0vA 338 7.37e-19 1juhA 350 4.95e-18 b.82.1.5 71884 1sfnA 246 1.85e-17 b.82.1.11 105496 2vqaA 361 1.93e-17 1sefA 274 2.63e-17 b.82.1.11 105452 1rc6A 261 5.15e-16 b.82.1.11 97287 2vecA 256 1.10e-15 1j58A 385 5.26e-15 b.82.1.2 71531 2phdA 368 5.63e-15 b.82.1.23 149468 3ebrA 159 2.45e-14 2o1qA 145 3.79e-14 b.82.1.21 148547 2d40A 354 4.72e-14 b.82.1.23 146454 3cjxA 165 8.78e-14 3ibmA 167 1.96e-13 2q1zB 195 2.15e-13 3kgzA 156 2.49e-13 3ht1A 145 5.33e-13 1y3tA 337 6.10e-13 b.82.1.5 122600 3c3vA 510 6.98e-13 2e9qA 459 7.47e-13 1vj2A 126 8.22e-13 b.82.1.10 100796 1lr5A 163 1.04e-12 b.82.1.2 74215 2qnkA 286 1.34e-12 2d5fA 493 2.00e-12 2pfwA 116 2.89e-12 3l2hA 162 3.10e-12 1o4tA 133 5.47e-12 b.82.1.9 86622 3h7jA 243 6.07e-12 2oa2A 148 7.94e-12 3h8uA 125 1.03e-11 3fjsA 114 1.09e-11 1yhfA 115 1.12e-11 b.82.1.9 123176 3i7dA 163 2.26e-11 1v70A 105 2.31e-11 b.82.1.9 113555 3cewA 125 4.08e-11 2b8mA 117 5.29e-11 b.82.1.18 128092 3es1A 172 7.61e-11 2ea7A 434 1.83e-10 2q30A 110 2.10e-10 1fi2A 201 2.14e-10 b.82.1.2 59845 2ozjA 114 2.62e-10 3fz3A 531 3.27e-10 1x82A 190 3.47e-10 b.82.1.7 114955 2et1A 201 3.60e-10 b.82.1.2 132351 2gu9A 113 3.94e-10 2o8qA 134 4.83e-10 2pytA 133 5.83e-10 b.82.1.24 149957 2gc1A 188 6.70e-10 b.82.1.7 134928 3d82A 102 1.74e-09 3eqeA 171 2.68e-09 1y9qA 192 2.86e-09 a.35.1.8,b.82.1.15 116592,116593 3lagA 98 3.37e-09 2f4pA 147 4.13e-09 b.82.1.9 132933 2fqpA 97 4.22e-09 2gm6A 208 1.46e-08 b.82.1.19 147130 1zrrA 179 1.90e-08 b.82.1.6 125555 3lwcA 119 3.80e-08 2oziA 98 4.41e-08 1dgwA 178 1.51e-07 b.82.1.2 28090 2i45A 107 1.90e-07 3bcwA 123 2.06e-07 2b5hA 200 2.65e-07 b.82.1.19 127894 1xjaA 178 4.83e-07 b.82.4.1 115382 1yfuA 174 1.84e-06 b.82.1.20 123094 3g7dA 443 3.14e-06 3elnA 200 5.04e-06 b.82.1.19 158185 2bnmA 198 1.24e-05 a.35.1.3,b.82.1.10 128835,128836 1vr3A 191 2.13e-05 b.82.1.6 120431 3d0jA 140 3.08e-05 2opkA 112 4.04e-05 3gbgA 276 4.80e-05 1zvfA 176 7.69e-05 b.82.1.20 146029 3esgA 193 0.000386 2pamA 141 0.000789 b.82.1.1 149348 1pmi 440 0.000793 2pa7A 141 0.002491 b.82.1.1 149339 3es4A 116 0.003415 1qwrA 319 0.006400 b.82.1.3 96491 2vpvA 166 0.009770 1vrbA 342 0.01683 b.82.2.11 120450 3ejkA 174 0.02024 3k3oA 371 0.02147 1pmiA 440 0.03307 b.82.1.3 28114 3fhiB 154 0.03433 1o5uA 101 0.04475 b.82.1.8 92518 1rl3A 288 0.07123 b.82.3.2,b.82.3.2 104975,104976 3idbB 161 0.07337 2arcA 164 0.08101 b.82.4.1 28148 2qvsB 310 0.09275 3d8cA 349 0.1364 2wwuA 371 0.1680 3bb6A 127 0.2050 b.82.2.13 155045 1zx5A 300 0.2278 b.82.1.3 125763 1q3eA 207 0.2988 b.82.3.2 95669 1vp6A 138 0.3174 b.82.3.2 113939 2fmyA 220 0.3206 1e5rA 290 0.3317 b.82.2.4 59276 2d93A 134 0.3733 1wgpA 137 0.3858 b.82.3.2 114619 1eybA 471 0.5926 b.82.1.4 28115 3eo6A 106 0.6497 1hw5A 210 0.6747 a.4.5.4,b.82.3.2 16098,28137 1yllA 200 0.6908 b.82.1.17 123653 1h2kA 349 0.8144 b.82.2.6 76572 2ptmA 198 0.8144 2h6bA 250 0.8618 a.4.5.4,b.82.3.2 147228,147229 1zybA 232 0.9406 a.4.5.4,b.82.3.2 125815,125816 2yu1A 451 1.013 2rg4A 216 1.017 3dl3A 119 1.039 b.82.2.13 157762 3gydA 187 1.045 3bpzA 202 1.085 3cf6E 694 1.224 3h3zA 235 1.277 2h6cA 232 1.343 a.4.5.4,b.82.3.2 147232,147233 3k2oA 336 1.344 3fx3A 237 1.513 3e97A 231 1.583 2gauA 232 1.704 a.4.5.4,b.82.3.2 134894,134895 2pia 321 1.849 2pqqA 149 2.252 2b9uA 176 2.534 3d0sA 227 2.861 3e5xA 250 2.899 3e6cC 250 2.995 a.4.5.4,b.82.3.2 158038,158039 3i1cA 324 3.024 3hqxA 111 3.125 3dkqA 243 3.421 1o5lA 213 3.550 b.82.3.2 92506 2zcwA 202 3.859 3h1wA 393 4.693 3dv8A 220 5.206 1xruA 282 5.337 b.82.1.13 122262 2wfpA 394 5.402 1upiA 225 5.925 b.82.1.1 99757 2cohA 202 6.015 a.4.5.4,b.82.3.2 130677,130678 1ep0A 185 6.045 b.82.1.1 28080 2v4nA 254 6.430 2z69A 154 6.618 2phjA 251 6.747 1ywkA 289 6.981 b.82.1.13 124155 2bdrA 175 7.137 b.82.1.14 128342 2wqkA 251 7.416 2ixkA 184 7.963 1oi6A 205 8.437 b.82.1.1 103940 1o7fA 469 8.947 a.4.5.31,b.82.3.2,b.82.3.2 81131,81132,81133 3dn7A 194 10.06 2eg4A 230 12.04 3lnpA 468 12.74 2piaA 321 13.44 b.43.4.2,c.25.1.2,d.15.4.2 25663,31553,37704 2zdbA 195 13.64 2oyzA 94 14.24 b.82.1.22 149082 1ru4A 400 14.87 b.80.1.9 97836 2c0zA 216 17.03 b.82.1.1 129615 2a1xA 308 17.14 b.82.2.9 126022 2opwA 291 18.58 1pjxA 314 18.90 b.68.6.1 104167 1am2 199 19.25 1f46A 140 19.30 d.129.4.1 59643 1j0hA 588 19.38 b.1.18.2,b.71.1.1,c.1.8.1 77027,77028,77029 2we3A 264 21.24 1dgwX 79 22.63 b.82.1.2 28091 1doiA 128 22.78 d.15.4.1 37676 2wozA 318 24.69 3mdpA 142 24.94 2gwfA 157 24.96 c.46.1.4 135802 1fitA 147 25.70 d.13.1.1 37499 3cfuA 159 27.39 2qjvA 270 29.14 2bgcA 238 29.24 a.4.5.4,b.82.3.3 128458,128459 1a62A 130 29.29 a.140.3.1,b.40.4.5 64708,64709 1nltA 248 33.15 b.4.1.1,b.4.1.1,g.54.1.1 91963,91964,91965 1nxmA 197 33.54 b.82.1.1 86385 1rydA 387 34.06 c.2.1.3,d.81.1.5 118801,118802 1frdA 98 34.81 d.15.4.1 37648 1crzA 403 37.11 b.68.4.1,c.51.2.1 27629,33211 2c0rA 362 37.40 c.67.1.4 129604 3ii7A 306 37.50 3lhnA 126 37.95 3gqiB 226 39.79 2iccA 119 40.22 3a8kA 364 42.51 2gopA 347 43.84 2vpjA 301 45.95 3dhuA 449 46.50 3flhA 124 47.21 3ksvA 149 47.40 1rhs 296 48.29 2fp8A 322 49.48 1e10A 128 50.07 d.15.4.1 59154 2fluX 308 50.13 b.68.11.1 133750 3lv9A 148 50.40 1rhsA 296 51.78 c.46.1.2,c.46.1.2 32703,32704 3b6zA 371 53.83 2qruA 274 54.00 2bgiA 272 54.17 2jkdA 187 54.67 1fit 147 54.92 3lkwA 236 55.93 3i4sA 149 57.10 1qksA 567 59.00 a.3.1.2,b.70.2.1 15951,27710 2qhpA 296 60.41 1g94A 448 60.61 b.71.1.1,c.1.8.1 65169,65170 1npeA 267 60.85 b.68.5.1 92032 3cgxA 242 63.57 3a8jA 364 64.44 2iw1A 374 66.17 c.87.1.8 137738 3k8kA 669 67.14 1czpA 98 67.51 d.15.4.1 37645 3etcA 580 68.39 3dhvA 512 69.12 3g7gA 158 69.36 2we0A 286 69.43 3a63A 365 70.73 1te0A 318 71.88 b.36.1.4,b.47.1.1 112400,112401 2ae5B 528 74.61 2f15A 96 81.35 b.1.18.21 146993 2o5fA 171 83.02 d.113.1.2 148596 2fb1A 226 83.35 a.4.5.68,d.113.1.6 133225,133226 1wstA 417 84.47 c.67.1.1 121244 2hcuA 213 84.70 1j9lA 247 85.03 c.106.1.1 62762 2c21A 144 87.06 d.32.1.1 129649 1xfpA 142 89.76 b.1.1.1 109587 1ebfA 358 89.81 c.2.1.3,d.81.1.2 30033,39948 2q87A 110 89.82 1y23A 145 89.94 d.13.1.1 116394