# List of top-scoring protein chains for t06-w0.5-1-n_sep-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://compbio.soe.ucsc.edu/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1tq5A 242 2.60e-20 b.82.1.12 119311 2p17A 277 1.07e-19 1j1lA 290 1.16e-19 b.82.1.12 90766 2h0vA 338 7.12e-18 2qdrA 303 1.23e-17 1juhA 350 8.72e-17 b.82.1.5 71884 2vqaA 361 5.04e-16 1sfnA 246 5.04e-16 b.82.1.11 105496 1sefA 274 5.49e-16 b.82.1.11 105452 1rc6A 261 9.06e-15 b.82.1.11 97287 2phdA 368 2.22e-14 b.82.1.23 149468 2vecA 256 3.26e-14 1j58A 385 8.97e-14 b.82.1.2 71531 2d40A 354 1.85e-13 b.82.1.23 146454 2o1qA 145 6.26e-13 b.82.1.21 148547 3ebrA 159 7.47e-13 3cjxA 165 1.53e-12 3ibmA 167 4.94e-12 1y3tA 337 6.26e-12 b.82.1.5 122600 2q1zB 195 6.42e-12 3ht1A 145 8.33e-12 2pfwA 116 1.07e-11 3c3vA 510 1.14e-11 3kgzA 156 1.38e-11 1vj2A 126 1.44e-11 b.82.1.10 100796 1lr5A 163 1.81e-11 b.82.1.2 74215 2e9qA 459 1.99e-11 3h7jA 243 2.80e-11 3l2hA 162 3.22e-11 2qnkA 286 4.65e-11 1o4tA 133 6.03e-11 b.82.1.9 86622 2oa2A 148 7.76e-11 3i7dA 163 8.26e-11 3cewA 125 8.90e-11 3fjsA 114 9.66e-11 2d5fA 493 1.03e-10 1yhfA 115 1.06e-10 b.82.1.9 123176 1v70A 105 1.08e-10 b.82.1.9 113555 3h8uA 125 1.72e-10 3es1A 172 2.22e-10 2b8mA 117 5.12e-10 b.82.1.18 128092 2q30A 110 8.94e-10 2gu9A 113 1.47e-09 1fi2A 201 1.88e-09 b.82.1.2 59845 2gc1A 188 2.13e-09 b.82.1.7 134928 2et1A 201 2.83e-09 b.82.1.2 132351 1x82A 190 3.05e-09 b.82.1.7 114955 2ozjA 114 3.05e-09 2ea7A 434 3.12e-09 2pytA 133 3.71e-09 b.82.1.24 149957 3lagA 98 4.90e-09 2o8qA 134 5.37e-09 3fz3A 531 6.22e-09 1y9qA 192 1.08e-08 a.35.1.8,b.82.1.15 116592,116593 3eqeA 171 1.60e-08 2fqpA 97 1.84e-08 3d82A 102 1.94e-08 2f4pA 147 3.07e-08 b.82.1.9 132933 3lwcA 119 5.41e-08 2oziA 98 1.06e-07 2gm6A 208 1.06e-07 b.82.1.19 147130 1zrrA 179 2.38e-07 b.82.1.6 125555 2b5hA 200 4.08e-07 b.82.1.19 127894 3bcwA 123 5.49e-07 1xjaA 178 5.95e-07 b.82.4.1 115382 2i45A 107 9.13e-07 1dgwA 178 3.48e-06 b.82.1.2 28090 3g7dA 443 4.29e-06 1yfuA 174 1.40e-05 b.82.1.20 123094 2bnmA 198 1.76e-05 a.35.1.3,b.82.1.10 128835,128836 3gbgA 276 3.87e-05 3elnA 200 3.93e-05 b.82.1.19 158185 1vr3A 191 7.07e-05 b.82.1.6 120431 2opkA 112 0.000156 3d0jA 140 0.000165 3esgA 193 0.000196 1zvfA 176 0.000281 b.82.1.20 146029 1pmi 440 0.000831 2pamA 141 0.001315 b.82.1.1 149348 2pa7A 141 0.003143 b.82.1.1 149339 3es4A 116 0.005184 1qwrA 319 0.005848 b.82.1.3 96491 2vpvA 166 0.01401 1pmiA 440 0.01696 b.82.1.3 28114 3ejkA 174 0.01918 1o5uA 101 0.04480 b.82.1.8 92518 3k3oA 371 0.04789 1vrbA 342 0.07562 b.82.2.11 120450 2wwuA 371 0.09438 1yllA 200 0.1046 b.82.1.17 123653 3k2oA 336 0.1302 3fhiB 154 0.1557 1zx5A 300 0.1729 b.82.1.3 125763 3d8cA 349 0.2371 2arcA 164 0.2568 b.82.4.1 28148 1e5rA 290 0.3478 b.82.2.4 59276 2yu1A 451 0.3728 3i1cA 324 0.4251 3h1wA 393 0.4274 1q3eA 207 0.5152 b.82.3.2 95669 2rg4A 216 0.5346 3bb6A 127 0.6281 b.82.2.13 155045 3dl3A 119 0.7392 b.82.2.13 157762 3eo6A 106 0.9286 3idbB 161 1.100 3gqiB 226 1.447 1h2kA 349 1.454 b.82.2.6 76572 1vp6A 138 1.605 b.82.3.2 113939 3bpzA 202 1.629 1o7fA 469 1.803 a.4.5.31,b.82.3.2,b.82.3.2 81131,81132,81133 1rl3A 288 1.909 b.82.3.2,b.82.3.2 104975,104976 3lkwA 236 1.943 2d93A 134 2.142 2fmyA 220 2.228 2ptmA 198 2.307 1eybA 471 2.622 b.82.1.4 28115 2o62A 270 2.646 b.60.1.9,b.60.1.9 148622,148623 2bdrA 175 2.673 b.82.1.14 128342 3dkqA 243 3.014 2wfpA 394 3.297 2vpjA 301 4.453 1ep0A 185 4.645 b.82.1.1 28080 3cf6E 694 5.360 2b9uA 176 5.371 2ixkA 184 5.836 1upiA 225 5.905 b.82.1.1 99757 1wgpA 137 6.437 b.82.3.2 114619 1pjxA 314 6.619 b.68.6.1 104167 1mpxA 615 7.362 b.18.1.13,c.69.1.21 85041,85042 3l6pA 236 7.805 1a0tP 413 7.807 f.4.3.2 43794 1oi6A 205 7.899 b.82.1.1 103940 1hw5A 210 8.837 a.4.5.4,b.82.3.2 16098,28137 3hqxA 111 8.859 2c0zA 216 9.255 b.82.1.1 129615 2h6cA 232 9.591 a.4.5.4,b.82.3.2 147232,147233 2gauA 232 9.777 a.4.5.4,b.82.3.2 134894,134895 3gdcA 288 9.867 1xsqA 168 9.98 b.82.1.14 115999 1npeA 267 9.99 b.68.5.1 92032 3e5xA 250 11.59 2bklA 695 12.05 1nxmA 197 12.05 b.82.1.1 86385 3h3zA 235 12.36 2fluX 308 12.69 b.68.11.1 133750 3fgbA 361 13.90 2h6bA 250 14.33 a.4.5.4,b.82.3.2 147228,147229 3g1pA 258 14.38 2qvsB 310 14.45 2jkdA 187 15.43 3lhnA 126 15.98 2ichA 335 16.59 b.176.1.1 147602 3e6cC 250 17.54 a.4.5.4,b.82.3.2 158038,158039 2eg4A 230 17.99 2pqqA 149 18.03 1x2jA 316 18.33 b.68.11.1 121643 2pia 321 18.44 3d0sA 227 19.26 1dgwX 79 19.49 b.82.1.2 28091 1crzA 403 22.08 b.68.4.1,c.51.2.1 27629,33211 2oyzA 94 22.52 b.82.1.22 149082 3fx3A 237 23.27 1zybA 232 23.55 a.4.5.4,b.82.3.2 125815,125816 3e7jA 749 23.68 3li4A 314 24.04 3gydA 187 24.21 2fp8A 322 24.62 3bwsA 433 24.72 3cjyA 259 25.68 3htnA 149 25.90 2v4nA 254 27.21 1rydA 387 27.37 c.2.1.3,d.81.1.5 118801,118802 2wanA 921 31.16 2fomB 185 31.40 b.47.1.3 133884 1snzA 344 32.41 b.30.5.4 98930 1u6lA 149 33.16 d.32.1.7 113067 2zcwA 202 33.82 3hxjA 330 33.85 3e97A 231 33.88 2we3A 264 34.43 3elsA 158 34.51 1i3zA 103 34.94 d.93.1.1 83667 3dv8A 220 34.98 2opwA 291 35.71 1ru4A 400 35.78 b.80.1.9 97836 2cohA 202 37.72 a.4.5.4,b.82.3.2 130677,130678 1zc0A 309 39.76 3llpA 493 41.57 3hkxA 283 41.90 1wzaA 488 41.93 b.71.1.1,c.1.8.1 121489,121490 3etcA 580 42.65 1mdaH 368 42.95 b.69.2.1 27637 2fp7B 172 43.04 b.47.1.3 133899 2piaA 321 44.15 b.43.4.2,c.25.1.2,d.15.4.2 25663,31553,37704 1a62A 130 44.71 a.140.3.1,b.40.4.5 64708,64709 3ii7A 306 46.64 2f6eA 127 47.12 2ghsA 326 47.95 b.68.6.1 135209 2w08A 204 48.04 3dr2A 305 48.04 2qjvA 270 48.64 2f15A 96 48.76 b.1.18.21 146993 1zh8A 340 48.78 c.2.1.3,d.81.1.5 125077,125078 1aozA 552 48.84 b.6.1.3,b.6.1.3,b.6.1.3 23124,23125,23126 2vrqA 496 49.12 3ip3A 337 49.79 2h6lA 146 50.28 d.290.1.3 136197 2gpyA 233 50.33 2wqkA 251 51.26 3lydA 161 52.20 1n9pA 207 53.81 b.1.18.16 80343 1qksA 567 54.21 a.3.1.2,b.70.2.1 15951,27710 3htyA 94 54.77 1fitA 147 55.34 d.13.1.1 37499 1z6bA 154 55.70 d.38.1.6 124510 1x9lA 149 56.05 b.2.10.1 109528 3dtyA 398 56.13 1zgkA 308 57.41 b.68.11.1 145998 1f46A 140 58.08 d.129.4.1 59643 2e11A 266 59.97 1ayaA 101 60.12 d.93.1.1 40460 3iurA 693 61.65 2cn3A 737 62.12 2zdbA 195 63.67 2z69A 154 64.35 3bbjA 272 64.62 1kbpA 432 64.65 b.1.12.1,d.159.1.1 22349,42068 2bgiA 272 64.76 2a1xA 308 65.53 b.82.2.9 126022 1dgwY 93 65.72 2glxA 332 67.21 2a13A 166 68.00 b.60.1.8 125971 2gc7A 386 68.00 b.69.2.1 134954 1iz6A 138 68.46 b.34.5.2,b.40.4.5 76976,76977 1q7fA 286 68.68 b.68.9.1 96036 2phjA 251 70.33 1pl3A 186 70.59 b.1.9.1 88158 2v05A 311 72.55 1fit 147 74.97 1xruA 282 75.08 b.82.1.13 122262 1c1lA 136 75.68 b.29.1.3 24219 2wozA 318 76.96 1h5bB 113 77.22 b.1.1.1 60639 3floA 460 77.48 3ck2A 176 78.13 d.159.1.7 156724 3imiA 147 78.73 3dhvA 512 80.75 1uaiA 224 81.41 b.29.1.18 107761 1e6eB 128 82.51 d.15.4.1 59300 3f4lA 345 83.25 3dczA 207 83.40 1h3gA 601 83.46 b.1.18.2,b.71.1.1,c.1.8.1 90594,90595,90596 2hqsA 415 83.97 b.68.4.1,c.51.2.1 136662,136663 1fo0A 116 85.53 b.1.1.1 20610 1iakA 199 88.17 b.1.1.2,d.19.1.1 21625,38199 3ce1A 168 88.54 3dfuA 232 89.56 2fyqA 194 89.56 2q4nA 166 89.74 b.60.1.8 139871 2q7nA 488 89.80