# List of top-scoring protein chains for t06-w0.5-1-n_notor2-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://compbio.soe.ucsc.edu/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2p17A 277 1.99e-14 1tq5A 242 2.03e-14 b.82.1.12 119311 1j1lA 290 4.39e-13 b.82.1.12 90766 2h0vA 338 2.63e-12 2qdrA 303 2.86e-12 1juhA 350 4.69e-12 b.82.1.5 71884 2vqaA 361 4.06e-11 1sfnA 246 6.41e-11 b.82.1.11 105496 1sefA 274 7.99e-11 b.82.1.11 105452 1rc6A 261 4.99e-10 b.82.1.11 97287 2d40A 354 5.50e-10 b.82.1.23 146454 2phdA 368 1.02e-09 b.82.1.23 149468 2vecA 256 1.81e-09 1j58A 385 2.73e-09 b.82.1.2 71531 2o1qA 145 7.38e-09 b.82.1.21 148547 3ebrA 159 1.28e-08 3cjxA 165 2.80e-08 2d5fA 493 3.24e-08 2e9qA 459 4.12e-08 1y3tA 337 4.18e-08 b.82.1.5 122600 3ibmA 167 4.24e-08 2q1zB 195 5.56e-08 3kgzA 156 5.92e-08 3ht1A 145 7.08e-08 3i7dA 163 9.46e-08 2pfwA 116 1.18e-07 1lr5A 163 1.24e-07 b.82.1.2 74215 1vj2A 126 1.35e-07 b.82.1.10 100796 2qnkA 286 1.88e-07 3l2hA 162 2.15e-07 3h7jA 243 2.16e-07 3c3vA 510 2.65e-07 2ea7A 434 2.93e-07 3cewA 125 3.20e-07 1o4tA 133 3.30e-07 b.82.1.9 86622 2oa2A 148 4.16e-07 3h8uA 125 5.13e-07 1v70A 105 5.74e-07 b.82.1.9 113555 1yhfA 115 5.94e-07 b.82.1.9 123176 3fjsA 114 6.25e-07 3fz3A 531 6.69e-07 2b8mA 117 7.64e-07 b.82.1.18 128092 2q30A 110 2.63e-06 3es1A 172 2.88e-06 1fi2A 201 3.05e-06 b.82.1.2 59845 2gu9A 113 3.72e-06 2et1A 201 4.37e-06 b.82.1.2 132351 2gc1A 188 4.52e-06 b.82.1.7 134928 2o8qA 134 5.30e-06 2ozjA 114 5.62e-06 2pytA 133 6.08e-06 b.82.1.24 149957 3lagA 98 7.05e-06 1x82A 190 9.57e-06 b.82.1.7 114955 3eqeA 171 1.84e-05 1y9qA 192 2.10e-05 a.35.1.8,b.82.1.15 116592,116593 2fqpA 97 2.34e-05 3d82A 102 2.45e-05 2f4pA 147 2.91e-05 b.82.1.9 132933 3lwcA 119 6.01e-05 2oziA 98 0.000105 2gm6A 208 0.000134 b.82.1.19 147130 1xjaA 178 0.000183 b.82.4.1 115382 3bcwA 123 0.000320 2i45A 107 0.000362 1zrrA 179 0.000575 b.82.1.6 125555 2b5hA 200 0.000706 b.82.1.19 127894 1dgwA 178 0.001057 b.82.1.2 28090 1yfuA 174 0.002460 b.82.1.20 123094 2bnmA 198 0.003062 a.35.1.3,b.82.1.10 128835,128836 3elnA 200 0.006957 b.82.1.19 158185 1vr3A 191 0.008765 b.82.1.6 120431 3gbgA 276 0.01010 2opkA 112 0.01398 3d0jA 140 0.01999 1zvfA 176 0.02870 b.82.1.20 146029 3g7dA 443 0.03854 3esgA 193 0.04956 2pamA 141 0.1024 b.82.1.1 149348 2pa7A 141 0.1932 b.82.1.1 149339 1vrbA 342 0.2804 b.82.2.11 120450 3es4A 116 0.2927 2vpvA 166 0.3099 3ejkA 174 0.4908 1qwrA 319 0.5581 b.82.1.3 96491 1yllA 200 0.6522 b.82.1.17 123653 1o5uA 101 1.494 b.82.1.8 92518 1pmi 440 2.315 1rl3A 288 2.802 b.82.3.2,b.82.3.2 104975,104976 3fhiB 154 3.077 3d8cA 349 3.165 1o7fA 469 3.182 a.4.5.31,b.82.3.2,b.82.3.2 81131,81132,81133 2vzsA 1032 3.470 b.1.4.1,b.1.4.1,b.1.4.1,b.18.1.5,c.1.8.3 153727,153728,153729,153730,153731 2arcA 164 5.054 b.82.4.1 28148 3g0bA 740 5.058 2wwuA 371 5.959 1q3eA 207 6.120 b.82.3.2 95669 2rg4A 216 6.388 3lnpA 468 6.465 1eybA 471 6.566 b.82.1.4 28115 3h2iA 397 7.912 3kd4A 506 9.168 3gqiB 226 9.356 3hacA 728 9.668 1h2kA 349 10.27 b.82.2.6 76572 1e5rA 290 10.74 b.82.2.4 59276 1ep0A 185 11.47 b.82.1.1 28080 3g5cA 510 11.54 3cf6E 694 13.06 2h6cA 232 13.26 a.4.5.4,b.82.3.2 147232,147233 3bpzA 202 14.10 3idbB 161 15.18 2ptmA 198 15.43 2r9qA 370 16.23 2gauA 232 16.52 a.4.5.4,b.82.3.2 134894,134895 3eo6A 106 16.68 3bb6A 127 18.15 b.82.2.13 155045 3dl3A 119 19.84 b.82.2.13 157762 2vpjA 301 19.90 2yu1A 451 20.69 2ixkA 184 22.84 3lkwA 236 22.86 3e5xA 250 23.15 2bdrA 175 23.48 b.82.1.14 128342 2b9uA 176 23.49 1vp6A 138 24.15 b.82.3.2 113939 2fmyA 220 24.32 1upiA 225 25.02 b.82.1.1 99757 1rydA 387 27.37 c.2.1.3,d.81.1.5 118801,118802 1r6vA 671 27.63 c.41.1.1 111710 1oi6A 205 28.16 b.82.1.1 103940 2w9mA 578 28.93 2qvsB 310 29.52 2o62A 270 29.65 b.60.1.9,b.60.1.9 148622,148623 2as0A 396 29.82 b.122.1.9,c.66.1.51 127227,127228 3fpcA 352 29.88 2d93A 134 29.89 1bifA 469 31.98 c.37.1.7,c.60.1.4 31961,34003 3dkqA 243 33.60 1xf1A 926 33.72 3m6sA 331 34.76 1zybA 232 35.52 a.4.5.4,b.82.3.2 125815,125816 1x1iA 752 38.96 a.102.3.2,b.24.1.1,b.30.5.2 121584,121585,121586 3eb8A 358 40.09 2qf7A 1165 40.45 2b5eA 504 40.78 c.47.1.2,c.47.1.2,c.47.1.2,c.47.1.2 127888,127889,127890,127891 3b6zA 371 41.39 1x2jA 316 42.02 b.68.11.1 121643 1p4kA 295 42.47 d.153.1.5 87772 3llpA 493 45.90 3fjyA 364 46.62 3l6pA 236 47.23 1aozA 552 47.96 b.6.1.3,b.6.1.3,b.6.1.3 23124,23125,23126 1a0tP 413 48.26 f.4.3.2 43794 3gdcA 288 48.93 1jsdA 319 50.32 b.19.1.2 63258 3hqxA 111 51.58 2gtlM 217 51.90 b.61.7.1,g.12.1.1,h.1.32.1 135667,135668,135669 1nxmA 197 53.39 b.82.1.1 86385 3k3oA 371 53.70 2fluX 308 54.16 b.68.11.1 133750 3hvnA 508 60.06 3h3zA 235 60.56 3ip3A 337 60.79 3hnoA 419 62.89 1eu1A 780 63.60 b.52.2.2,c.81.1.1 26903,35311 3dtyA 398 64.93 1uaiA 224 64.99 b.29.1.18 107761 3euwA 344 66.58 1y08A 323 67.96 d.3.1.12 116280 1bif 469 68.48 2vrqA 496 69.16 1hw5A 210 70.86 a.4.5.4,b.82.3.2 16098,28137 1xsqA 168 72.57 b.82.1.14 115999 3kt7A 633 72.76 3evnA 329 74.24 1pmiA 440 74.46 b.82.1.3 28114 3gsnB 243 75.62 2ouiA 360 75.77 2wdcA 562 76.05 2qmjA 870 78.72 1olmA 403 79.29 a.5.3.1,b.132.1.1,c.13.1.1 104008,104009,104010 3fhhA 640 79.53 1qo8A 566 80.21 a.138.1.3,c.3.1.4,d.168.1.1 19696,30433,42316 3gwjA 674 81.01 2c0zA 216 82.45 b.82.1.1 129615 3bsoA 510 82.68 1i19A 561 85.78 d.58.32.3,d.145.1.1 61522,61523 2ho3A 325 85.99 3fgbA 361 86.02 1bg1A 722 87.38 a.47.1.1,b.2.5.5,d.93.1.1 17767,22461,40527 1f46A 140 87.84 d.129.4.1 59643 1hdhA 536 88.97 c.76.1.2 65805 2d1sA 548 89.50