# List of top-scoring protein chains for t06-w0.5-1-n_notor-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://compbio.soe.ucsc.edu/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1tq5A 242 2.83e-20 b.82.1.12 119311 2p17A 277 9.32e-20 1j1lA 290 1.30e-19 b.82.1.12 90766 2h0vA 338 2.84e-17 2qdrA 303 4.93e-17 1juhA 350 1.62e-16 b.82.1.5 71884 2vqaA 361 8.68e-16 1sefA 274 1.66e-15 b.82.1.11 105452 1sfnA 246 1.68e-15 b.82.1.11 105496 1rc6A 261 1.96e-14 b.82.1.11 97287 2vecA 256 2.10e-14 2phdA 368 4.55e-14 b.82.1.23 149468 1j58A 385 1.42e-13 b.82.1.2 71531 2d40A 354 3.76e-13 b.82.1.23 146454 2o1qA 145 5.68e-13 b.82.1.21 148547 3ebrA 159 1.35e-12 3cjxA 165 2.55e-12 3ibmA 167 6.02e-12 3ht1A 145 9.05e-12 2q1zB 195 1.00e-11 3c3vA 510 1.26e-11 3kgzA 156 1.42e-11 1vj2A 126 1.96e-11 b.82.1.10 100796 1y3tA 337 2.05e-11 b.82.1.5 122600 1lr5A 163 2.11e-11 b.82.1.2 74215 2pfwA 116 2.14e-11 2e9qA 459 2.19e-11 2qnkA 286 5.47e-11 3l2hA 162 5.64e-11 3h7jA 243 6.84e-11 3i7dA 163 8.47e-11 1o4tA 133 8.50e-11 b.82.1.9 86622 2oa2A 148 9.39e-11 3cewA 125 1.11e-10 1yhfA 115 1.59e-10 b.82.1.9 123176 2d5fA 493 1.72e-10 1v70A 105 1.86e-10 b.82.1.9 113555 3fjsA 114 1.90e-10 3h8uA 125 2.70e-10 3es1A 172 2.87e-10 2b8mA 117 5.17e-10 b.82.1.18 128092 1fi2A 201 1.55e-09 b.82.1.2 59845 2gu9A 113 1.56e-09 2q30A 110 1.78e-09 2et1A 201 2.38e-09 b.82.1.2 132351 2gc1A 188 2.59e-09 b.82.1.7 134928 2ea7A 434 3.29e-09 1x82A 190 3.38e-09 b.82.1.7 114955 3lagA 98 3.86e-09 2ozjA 114 3.91e-09 2o8qA 134 4.19e-09 3fz3A 531 5.11e-09 2pytA 133 5.23e-09 b.82.1.24 149957 1y9qA 192 1.24e-08 a.35.1.8,b.82.1.15 116592,116593 2fqpA 97 1.90e-08 3d82A 102 2.57e-08 3eqeA 171 2.73e-08 2f4pA 147 5.76e-08 b.82.1.9 132933 3lwcA 119 8.23e-08 2gm6A 208 9.39e-08 b.82.1.19 147130 2oziA 98 1.42e-07 1zrrA 179 2.76e-07 b.82.1.6 125555 2b5hA 200 4.65e-07 b.82.1.19 127894 1xjaA 178 5.99e-07 b.82.4.1 115382 3bcwA 123 7.53e-07 2i45A 107 1.05e-06 1dgwA 178 3.13e-06 b.82.1.2 28090 3g7dA 443 3.89e-06 1yfuA 174 1.36e-05 b.82.1.20 123094 2bnmA 198 1.70e-05 a.35.1.3,b.82.1.10 128835,128836 3elnA 200 4.20e-05 b.82.1.19 158185 3gbgA 276 4.94e-05 1vr3A 191 9.32e-05 b.82.1.6 120431 3d0jA 140 0.000164 2opkA 112 0.000179 1zvfA 176 0.000308 b.82.1.20 146029 3esgA 193 0.000672 1pmi 440 0.001007 2pamA 141 0.001303 b.82.1.1 149348 2pa7A 141 0.002729 b.82.1.1 149339 3es4A 116 0.005684 2vpvA 166 0.01004 3ejkA 174 0.01624 1qwrA 319 0.02065 b.82.1.3 96491 3k3oA 371 0.02270 1pmiA 440 0.02840 b.82.1.3 28114 1vrbA 342 0.03790 b.82.2.11 120450 2wwuA 371 0.04257 1o5uA 101 0.05817 b.82.1.8 92518 3d8cA 349 0.1183 3fhiB 154 0.1227 1yllA 200 0.1253 b.82.1.17 123653 3k2oA 336 0.1605 1zx5A 300 0.2035 b.82.1.3 125763 2yu1A 451 0.2399 2arcA 164 0.2626 b.82.4.1 28148 1q3eA 207 0.3191 b.82.3.2 95669 1e5rA 290 0.3342 b.82.2.4 59276 2rg4A 216 0.5717 1o7fA 469 0.7334 a.4.5.31,b.82.3.2,b.82.3.2 81131,81132,81133 3h1wA 393 0.7450 3bpzA 202 0.8815 3dl3A 119 0.9799 b.82.2.13 157762 3idbB 161 0.9828 3bb6A 127 1.057 b.82.2.13 155045 1rl3A 288 1.112 b.82.3.2,b.82.3.2 104975,104976 1h2kA 349 1.177 b.82.2.6 76572 3eo6A 106 1.382 2ptmA 198 1.411 1vp6A 138 1.692 b.82.3.2 113939 3gqiB 226 1.764 1ep0A 185 1.861 b.82.1.1 28080 2bdrA 175 2.037 b.82.1.14 128342 2fmyA 220 2.235 2d93A 134 2.324 2vpjA 301 2.391 3lkwA 236 2.401 3i1cA 324 2.717 2ixkA 184 2.727 1upiA 225 3.208 b.82.1.1 99757 1eybA 471 3.249 b.82.1.4 28115 2qvsB 310 3.766 2b9uA 176 3.928 1oi6A 205 3.962 b.82.1.1 103940 2o62A 270 4.121 b.60.1.9,b.60.1.9 148622,148623 2c0zA 216 4.345 b.82.1.1 129615 1mpxA 615 5.521 b.18.1.13,c.69.1.21 85041,85042 3dkqA 243 5.806 3cf6E 694 6.455 3h3zA 235 6.562 1hw5A 210 6.589 a.4.5.4,b.82.3.2 16098,28137 1xsqA 168 6.868 b.82.1.14 115999 1wgpA 137 7.368 b.82.3.2 114619 2gauA 232 7.980 a.4.5.4,b.82.3.2 134894,134895 3e5xA 250 8.024 1nxmA 197 8.142 b.82.1.1 86385 2wfpA 394 8.551 3l6pA 236 9.571 3e6cC 250 13.12 a.4.5.4,b.82.3.2 158038,158039 2h6cA 232 13.16 a.4.5.4,b.82.3.2 147232,147233 1x2jA 316 13.17 b.68.11.1 121643 2h6bA 250 13.85 a.4.5.4,b.82.3.2 147228,147229 3hqxA 111 14.81 2pqqA 149 15.14 2uvkA 357 15.32 1dgwX 79 15.87 b.82.1.2 28091 3gdcA 288 16.01 3lhnA 126 16.52 1rydA 387 16.54 c.2.1.3,d.81.1.5 118801,118802 3ii7A 306 16.82 3fx3A 237 17.65 2pia 321 18.23 2opwA 291 18.36 1zybA 232 19.16 a.4.5.4,b.82.3.2 125815,125816 2v4nA 254 19.39 3e97A 231 20.05 2fluX 308 20.28 b.68.11.1 133750 3gydA 187 20.33 1a0tP 413 20.73 f.4.3.2 43794 2f15A 96 20.97 b.1.18.21 146993 2fp8A 322 22.33 2bklA 695 23.24 3d0sA 227 23.38 2we3A 264 23.51 2oyzA 94 24.02 b.82.1.22 149082 2wanA 921 25.70 2eg4A 230 26.37 3e7jA 749 26.67 2cohA 202 26.69 a.4.5.4,b.82.3.2 130677,130678 1zgkA 308 27.91 b.68.11.1 145998 1npeA 267 29.08 b.68.5.1 92032 1snzA 344 30.45 b.30.5.4 98930 2zcwA 202 31.74 3bwsA 433 33.92 2piaA 321 35.89 b.43.4.2,c.25.1.2,d.15.4.2 25663,31553,37704 1f46A 140 37.18 d.129.4.1 59643 1i3zA 103 37.20 d.93.1.1 83667 2wqkA 251 38.22 3dv8A 220 39.25 3dhvA 512 40.83 3fgbA 361 41.59 3etcA 580 41.63 1aozA 552 43.07 b.6.1.3,b.6.1.3,b.6.1.3 23124,23125,23126 1ru4A 400 43.16 b.80.1.9 97836 3g1pA 258 44.34 2z69A 154 45.52 1qksA 567 45.76 a.3.1.2,b.70.2.1 15951,27710 2ichA 335 46.35 b.176.1.1 147602 2qfpA 424 47.10 b.1.12.1,d.159.1.1 150742,150743 1zh8A 340 47.95 c.2.1.3,d.81.1.5 125077,125078 2zdbA 195 48.92 1mdaH 368 49.72 b.69.2.1 27637 3floA 460 50.49 1x9lA 149 50.65 b.2.10.1 109528 3llpA 493 51.35 2r9qA 370 52.54 3ip3A 337 52.77 3htnA 149 53.03 1iz6A 138 53.36 b.34.5.2,b.40.4.5 76976,76977 1wzaA 488 53.64 b.71.1.1,c.1.8.1 121489,121490 3lydA 161 54.11 1q0xH 221 54.27 b.1.1.1,b.1.1.2 95517,95518 3dczA 207 56.19 1kbpA 432 56.31 b.1.12.1,d.159.1.1 22349,42068 2cn3A 737 56.75 1iakA 199 57.07 b.1.1.2,d.19.1.1 21625,38199 1u6lA 149 57.73 d.32.1.7 113067 1fo0A 116 58.10 b.1.1.1 20610 2phjA 251 58.54 1a62A 130 58.67 a.140.3.1,b.40.4.5 64708,64709 3gqsA 106 59.02 2jkdA 187 59.24 1crzA 403 59.51 b.68.4.1,c.51.2.1 27629,33211 2ae5B 528 59.89 2wozA 318 60.81 3e17A 88 61.31 2qt5A 200 62.50 1fitA 147 62.80 d.13.1.1 37499 2glxA 332 63.19 3db2A 354 66.13 1aym1 285 67.94 1uaiA 224 69.20 b.29.1.18 107761 3f4lA 345 69.76 3iplA 501 70.01 1dgwY 93 70.37 2fyqA 194 70.86 3ec7A 357 70.92 2vrqA 496 73.44 2qjvA 270 76.11 1pjxA 314 79.10 b.68.6.1 104167 3dfuA 232 79.22 1t5hX 504 82.18 e.23.1.1 106449 3dtyA 398 82.51 2ok8A 316 82.66 3m6sA 331 83.81 2bgiA 272 84.02 3kznA 359 84.13 1j0hA 588 84.23 b.1.18.2,b.71.1.1,c.1.8.1 77027,77028,77029 1xruA 282 85.11 b.82.1.13 122262 1fit 147 85.71 1z2wA 192 86.97 d.159.1.7 124390 2gpyA 233 89.51 3idaA 587 89.77