# List of top-scoring protein chains for t06-w0.5-1-dssp-ehl2-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://compbio.soe.ucsc.edu/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1tq5A 242 2.18e-18 b.82.1.12 119311 1j1lA 290 7.89e-18 b.82.1.12 90766 2p17A 277 1.08e-17 2h0vA 338 3.36e-15 2qdrA 303 3.99e-15 1juhA 350 1.37e-14 b.82.1.5 71884 2vqaA 361 9.52e-14 1sfnA 246 1.45e-13 b.82.1.11 105496 1sefA 274 1.75e-13 b.82.1.11 105452 1rc6A 261 1.01e-12 b.82.1.11 97287 2phdA 368 1.17e-12 b.82.1.23 149468 2vecA 256 3.58e-12 1j58A 385 1.06e-11 b.82.1.2 71531 2d40A 354 1.15e-11 b.82.1.23 146454 2o1qA 145 2.03e-11 b.82.1.21 148547 3ebrA 159 5.20e-11 3cjxA 165 8.01e-11 3ibmA 167 1.44e-10 2q1zB 195 2.33e-10 3c3vA 510 3.07e-10 3ht1A 145 5.15e-10 3kgzA 156 6.06e-10 1vj2A 126 6.26e-10 b.82.1.10 100796 2e9qA 459 6.63e-10 1y3tA 337 6.85e-10 b.82.1.5 122600 2qnkA 286 7.44e-10 1lr5A 163 8.39e-10 b.82.1.2 74215 3l2hA 162 1.06e-09 2pfwA 116 1.12e-09 3h7jA 243 1.44e-09 2oa2A 148 1.61e-09 1o4tA 133 1.72e-09 b.82.1.9 86622 2d5fA 493 2.87e-09 3i7dA 163 3.05e-09 1yhfA 115 4.25e-09 b.82.1.9 123176 3h8uA 125 4.92e-09 3cewA 125 5.34e-09 1v70A 105 6.41e-09 b.82.1.9 113555 3fjsA 114 6.89e-09 3es1A 172 8.99e-09 2b8mA 117 1.16e-08 b.82.1.18 128092 1fi2A 201 2.76e-08 b.82.1.2 59845 2q30A 110 3.66e-08 2gu9A 113 4.00e-08 2et1A 201 4.63e-08 b.82.1.2 132351 2gc1A 188 5.42e-08 b.82.1.7 134928 3fz3A 531 5.49e-08 1x82A 190 6.92e-08 b.82.1.7 114955 2ea7A 434 6.95e-08 2ozjA 114 7.28e-08 3lagA 98 9.03e-08 2o8qA 134 1.09e-07 2pytA 133 1.12e-07 b.82.1.24 149957 2fqpA 97 2.92e-07 3d82A 102 3.08e-07 1y9qA 192 3.23e-07 a.35.1.8,b.82.1.15 116592,116593 3eqeA 171 3.79e-07 2f4pA 147 1.19e-06 b.82.1.9 132933 2gm6A 208 1.41e-06 b.82.1.19 147130 3lwcA 119 1.55e-06 1zrrA 179 1.88e-06 b.82.1.6 125555 2oziA 98 2.73e-06 1xjaA 178 5.59e-06 b.82.4.1 115382 3bcwA 123 9.19e-06 2i45A 107 9.79e-06 3g7dA 443 1.47e-05 2b5hA 200 1.48e-05 b.82.1.19 127894 1dgwA 178 4.80e-05 b.82.1.2 28090 1yfuA 174 0.000146 b.82.1.20 123094 2bnmA 198 0.000211 a.35.1.3,b.82.1.10 128835,128836 3gbgA 276 0.000241 3elnA 200 0.000508 b.82.1.19 158185 1vr3A 191 0.000790 b.82.1.6 120431 2opkA 112 0.001301 3d0jA 140 0.001514 1zvfA 176 0.002081 b.82.1.20 146029 3esgA 193 0.002662 1pmi 440 0.003270 2pamA 141 0.005849 b.82.1.1 149348 2pa7A 141 0.01092 b.82.1.1 149339 3es4A 116 0.04509 1qwrA 319 0.05203 b.82.1.3 96491 2vpvA 166 0.05207 3ejkA 174 0.05274 1pmiA 440 0.1107 b.82.1.3 28114 1vrbA 342 0.1145 b.82.2.11 120450 3k3oA 371 0.1147 2wwuA 371 0.1547 3d8cA 349 0.2708 1o5uA 101 0.3513 b.82.1.8 92518 1yllA 200 0.3584 b.82.1.17 123653 3fhiB 154 0.5675 2yu1A 451 0.6188 3i1cA 324 0.7119 1zx5A 300 0.9606 b.82.1.3 125763 1e5rA 290 1.259 b.82.2.4 59276 3k2oA 336 1.273 2arcA 164 1.362 b.82.4.1 28148 1q3eA 207 1.480 b.82.3.2 95669 1rl3A 288 1.604 b.82.3.2,b.82.3.2 104975,104976 1h2kA 349 1.615 b.82.2.6 76572 2rg4A 216 2.001 1o7fA 469 2.703 a.4.5.31,b.82.3.2,b.82.3.2 81131,81132,81133 3h1wA 393 2.851 3gqiB 226 3.468 3idbB 161 3.948 3lkwA 236 3.991 3bb6A 127 4.611 b.82.2.13 155045 3bpzA 202 5.047 2qvsB 310 5.095 1mpxA 615 5.110 b.18.1.13,c.69.1.21 85041,85042 3eo6A 106 5.293 2d93A 134 5.542 2o62A 270 5.699 b.60.1.9,b.60.1.9 148622,148623 2vpjA 301 6.394 2pia 321 6.428 2ptmA 198 6.451 1upiA 225 6.852 b.82.1.1 99757 2bdrA 175 6.997 b.82.1.14 128342 3dl3A 119 7.610 b.82.2.13 157762 2fmyA 220 8.291 1vp6A 138 8.775 b.82.3.2 113939 1ep0A 185 9.947 b.82.1.1 28080 2uvkA 357 9.947 2fp8A 322 10.21 2piaA 321 10.43 b.43.4.2,c.25.1.2,d.15.4.2 25663,31553,37704 3dkqA 243 10.45 2ixkA 184 10.83 1hw5A 210 11.02 a.4.5.4,b.82.3.2 16098,28137 2b9uA 176 12.29 2c0zA 216 12.39 b.82.1.1 129615 1rydA 387 12.52 c.2.1.3,d.81.1.5 118801,118802 1oi6A 205 13.00 b.82.1.1 103940 1x2jA 316 14.23 b.68.11.1 121643 1dgwX 79 17.06 b.82.1.2 28091 1eybA 471 17.41 b.82.1.4 28115 1xsqA 168 18.36 b.82.1.14 115999 2v4nA 254 21.73 1f46A 140 21.77 d.129.4.1 59643 2bgiA 272 21.84 3l6pA 236 22.19 1nxmA 197 22.63 b.82.1.1 86385 3gdcA 288 22.95 3fd4A 191 23.46 2gauA 232 26.20 a.4.5.4,b.82.3.2 134894,134895 1wzaA 488 26.22 b.71.1.1,c.1.8.1 121489,121490 1wgpA 137 28.66 b.82.3.2 114619 3hqxA 111 28.95 1zgkA 308 29.22 b.68.11.1 145998 2phjA 251 29.56 1zybA 232 29.73 a.4.5.4,b.82.3.2 125815,125816 3e7jA 749 30.00 1a62A 130 32.37 a.140.3.1,b.40.4.5 64708,64709 3lhnA 126 33.08 3h3zA 235 35.70 2wfpA 394 36.19 2fluX 308 37.81 b.68.11.1 133750 3ec7A 357 37.91 1pjxA 314 38.46 b.68.6.1 104167 3e5xA 250 40.28 2jkdA 187 42.23 2f15A 96 42.66 b.1.18.21 146993 3ii7A 306 43.01 2vrqA 496 44.87 1aozA 552 45.49 b.6.1.3,b.6.1.3,b.6.1.3 23124,23125,23126 2h6cA 232 46.61 a.4.5.4,b.82.3.2 147232,147233 1snzA 344 47.31 b.30.5.4 98930 3ip3A 337 48.61 1iakA 199 49.15 b.1.1.2,d.19.1.1 21625,38199 2glxA 332 49.21 3m6sA 331 50.13 1zh8A 340 51.36 c.2.1.3,d.81.1.5 125077,125078 3f4lA 345 51.45 2eg4A 230 51.48 3hnpA 353 52.43 3db2A 354 52.49 2wqkA 251 52.75 2fyqA 194 52.88 3e17A 88 53.91 2h6bA 250 54.20 a.4.5.4,b.82.3.2 147228,147229 1x9lA 149 55.15 b.2.10.1 109528 1npeA 267 55.96 b.68.5.1 92032 3htnA 149 58.00 3e6cC 250 59.89 a.4.5.4,b.82.3.2 158038,158039 2opwA 291 61.85 2we3A 264 61.91 3idaA 587 63.59 1u6lA 149 64.55 d.32.1.7 113067 1jsdA 319 65.83 b.19.1.2 63258 2w59A 231 68.76 3ezyA 344 68.99 3evnA 329 69.18 3dr7A 391 71.13 3cqdA 309 71.45 3k4nA 623 71.55 3c9zA 258 75.03 2wanA 921 76.07 3cf6E 694 77.11 1a0tP 413 77.49 f.4.3.2 43794 2ok8A 316 77.65 2cohA 202 79.52 a.4.5.4,b.82.3.2 130677,130678 1o7nB 194 79.57 d.17.4.4 81164 1wstA 417 80.26 c.67.1.1 121244 2qt5A 200 81.23 3lydA 161 82.87 3ik2A 517 82.89 2psbA 320 83.52 c.153.1.1 149819 3g1pA 258 84.28 2zcwA 202 84.94 3d0sA 227 85.69 1n1tA 641 85.95 b.29.1.15,b.68.1.1 79821,79822 3dtyA 398 86.33 3fx3A 237 87.40 2ho3A 325 87.43 3e97A 231 87.76 3euwA 344 88.73 2fukA 220 89.86 c.69.1.36 147049