# List of top-scoring protein chains for t06-w0.5-1-alpha-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://compbio.soe.ucsc.edu/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1tq5A 242 8.21e-18 b.82.1.12 119311 1j1lA 290 1.84e-17 b.82.1.12 90766 2p17A 277 3.39e-17 2h0vA 338 1.26e-15 2qdrA 303 3.84e-15 1juhA 350 1.22e-14 b.82.1.5 71884 2vqaA 361 3.12e-14 1sfnA 246 5.68e-14 b.82.1.11 105496 1sefA 274 6.76e-14 b.82.1.11 105452 1rc6A 261 4.04e-13 b.82.1.11 97287 2phdA 368 9.75e-13 b.82.1.23 149468 1j58A 385 2.66e-12 b.82.1.2 71531 2vecA 256 5.20e-12 2d40A 354 1.09e-11 b.82.1.23 146454 2o1qA 145 1.54e-11 b.82.1.21 148547 3ebrA 159 3.19e-11 3cjxA 165 4.46e-11 1y3tA 337 8.55e-11 b.82.1.5 122600 2q1zB 195 1.06e-10 3ibmA 167 1.13e-10 3c3vA 510 1.87e-10 1vj2A 126 2.45e-10 b.82.1.10 100796 3ht1A 145 2.54e-10 2e9qA 459 2.78e-10 3kgzA 156 3.24e-10 2qnkA 286 4.17e-10 1lr5A 163 4.62e-10 b.82.1.2 74215 2pfwA 116 5.11e-10 3l2hA 162 5.22e-10 1o4tA 133 6.49e-10 b.82.1.9 86622 3h7jA 243 6.93e-10 2oa2A 148 9.59e-10 1yhfA 115 1.21e-09 b.82.1.9 123176 3fjsA 114 1.45e-09 3i7dA 163 1.61e-09 2d5fA 493 1.81e-09 1v70A 105 1.81e-09 b.82.1.9 113555 3cewA 125 2.38e-09 3h8uA 125 3.05e-09 2b8mA 117 3.07e-09 b.82.1.18 128092 3es1A 172 3.50e-09 2ea7A 434 1.26e-08 2q30A 110 1.29e-08 2gu9A 113 1.47e-08 1fi2A 201 1.48e-08 b.82.1.2 59845 2et1A 201 2.35e-08 b.82.1.2 132351 2ozjA 114 2.61e-08 3fz3A 531 3.28e-08 2gc1A 188 4.14e-08 b.82.1.7 134928 2pytA 133 4.72e-08 b.82.1.24 149957 1x82A 190 5.57e-08 b.82.1.7 114955 2o8qA 134 6.10e-08 3lagA 98 9.55e-08 3d82A 102 1.29e-07 2fqpA 97 1.64e-07 3eqeA 171 1.84e-07 1y9qA 192 2.07e-07 a.35.1.8,b.82.1.15 116592,116593 3lwcA 119 4.09e-07 2f4pA 147 4.89e-07 b.82.1.9 132933 1zrrA 179 5.31e-07 b.82.1.6 125555 2gm6A 208 6.13e-07 b.82.1.19 147130 1xjaA 178 1.63e-06 b.82.4.1 115382 2oziA 98 1.63e-06 2i45A 107 2.80e-06 2b5hA 200 2.87e-06 b.82.1.19 127894 3bcwA 123 3.08e-06 3g7dA 443 1.24e-05 1dgwA 178 1.25e-05 b.82.1.2 28090 1yfuA 174 3.14e-05 b.82.1.20 123094 3gbgA 276 9.32e-05 3elnA 200 0.000101 b.82.1.19 158185 2bnmA 198 0.000105 a.35.1.3,b.82.1.10 128835,128836 1vr3A 191 0.000157 b.82.1.6 120431 1zvfA 176 0.000471 b.82.1.20 146029 3d0jA 140 0.000474 2opkA 112 0.000568 3esgA 193 0.000971 1pmi 440 0.001670 2pamA 141 0.002831 b.82.1.1 149348 2pa7A 141 0.008354 b.82.1.1 149339 3es4A 116 0.01173 1qwrA 319 0.01595 b.82.1.3 96491 3ejkA 174 0.03124 2vpvA 166 0.03222 1pmiA 440 0.03238 b.82.1.3 28114 3k3oA 371 0.04071 1vrbA 342 0.04634 b.82.2.11 120450 2wwuA 371 0.05831 1o5uA 101 0.08788 b.82.1.8 92518 3d8cA 349 0.09431 3fhiB 154 0.1208 1zx5A 300 0.1278 b.82.1.3 125763 2arcA 164 0.2349 b.82.4.1 28148 2yu1A 451 0.2391 1yllA 200 0.2589 b.82.1.17 123653 3k2oA 336 0.2599 1e5rA 290 0.3393 b.82.2.4 59276 1h2kA 349 0.3972 b.82.2.6 76572 3i1cA 324 0.4613 2rg4A 216 0.4686 3bb6A 127 0.7759 b.82.2.13 155045 1q3eA 207 0.8941 b.82.3.2 95669 3idbB 161 1.060 3h1wA 393 1.104 3dl3A 119 1.196 b.82.2.13 157762 3gqiB 226 1.275 1rl3A 288 1.531 b.82.3.2,b.82.3.2 104975,104976 2vpjA 301 1.697 2d93A 134 1.928 3eo6A 106 2.181 2o62A 270 2.274 b.60.1.9,b.60.1.9 148622,148623 1vp6A 138 2.301 b.82.3.2 113939 2bdrA 175 2.410 b.82.1.14 128342 3bpzA 202 2.510 2fmyA 220 2.776 1eybA 471 2.798 b.82.1.4 28115 1ep0A 185 3.034 b.82.1.1 28080 3dkqA 243 3.171 1upiA 225 3.224 b.82.1.1 99757 3lkwA 236 3.298 2b9uA 176 3.405 1o7fA 469 3.879 a.4.5.31,b.82.3.2,b.82.3.2 81131,81132,81133 2uvkA 357 3.904 2ptmA 198 3.943 1hw5A 210 4.018 a.4.5.4,b.82.3.2 16098,28137 2qvsB 310 4.160 2ixkA 184 4.997 1dgwX 79 5.157 b.82.1.2 28091 3gdcA 288 5.181 1zybA 232 5.643 a.4.5.4,b.82.3.2 125815,125816 1oi6A 205 5.731 b.82.1.1 103940 1x2jA 316 5.793 b.68.11.1 121643 2c0zA 216 5.979 b.82.1.1 129615 2fluX 308 6.029 b.68.11.1 133750 2gauA 232 6.116 a.4.5.4,b.82.3.2 134894,134895 2pia 321 6.150 1xsqA 168 6.358 b.82.1.14 115999 1wgpA 137 6.424 b.82.3.2 114619 3hqxA 111 6.803 1nxmA 197 6.989 b.82.1.1 86385 2h6bA 250 7.152 a.4.5.4,b.82.3.2 147228,147229 2wfpA 394 7.244 1zgkA 308 8.148 b.68.11.1 145998 2pqqA 149 8.731 3h3zA 235 9.805 3ii7A 306 9.816 3cf6E 694 9.876 2h6cA 232 10.38 a.4.5.4,b.82.3.2 147232,147233 3e5xA 250 10.58 2qjvA 270 11.13 1ywkA 289 11.19 b.82.1.13 124155 2eg4A 230 11.69 3d0sA 227 11.81 3e6cC 250 12.30 a.4.5.4,b.82.3.2 158038,158039 2v4nA 254 12.41 2piaA 321 12.94 b.43.4.2,c.25.1.2,d.15.4.2 25663,31553,37704 2cohA 202 15.14 a.4.5.4,b.82.3.2 130677,130678 3e97A 231 15.19 1rydA 387 15.79 c.2.1.3,d.81.1.5 118801,118802 2zcwA 202 15.82 3fx3A 237 16.29 1npeA 267 16.77 b.68.5.1 92032 2fp8A 322 17.13 2oyzA 94 18.86 b.82.1.22 149082 3dv8A 220 20.16 1mpxA 615 20.22 b.18.1.13,c.69.1.21 85041,85042 1snzA 344 21.33 b.30.5.4 98930 2jkdA 187 21.85 2opwA 291 21.91 2z69A 154 22.22 2a1xA 308 22.61 b.82.2.9 126022 1a0tP 413 23.61 f.4.3.2 43794 1pjxA 314 25.81 b.68.6.1 104167 2phjA 251 27.78 2zdbA 195 27.93 3lhnA 126 28.70 1ru4A 400 28.83 b.80.1.9 97836 3gydA 187 28.92 1a62A 130 29.80 a.140.3.1,b.40.4.5 64708,64709 2r9qA 370 29.96 2bgiA 272 31.54 3l6pA 236 32.41 3g1pA 258 34.03 1xruA 282 36.13 b.82.1.13 122262 3elsA 158 36.40 1o5lA 213 37.14 b.82.3.2 92506 2we3A 264 38.74 3dn7A 194 40.99 1wstA 417 41.34 c.67.1.1 121244 3e7jA 749 45.13 2qt5A 200 45.63 2wqkA 251 45.93 1wzaA 488 47.30 b.71.1.1,c.1.8.1 121489,121490 3cfuA 159 47.42 2odlA 373 47.97 2ae5B 528 48.31 1j9lA 247 48.74 c.106.1.1 62762 3dr7A 391 50.77 1rhs 296 51.79 2fyqA 194 52.36 1x9lA 149 53.04 b.2.10.1 109528 1u6lA 149 54.22 d.32.1.7 113067 1f46A 140 54.24 d.129.4.1 59643 1jsdA 319 56.98 b.19.1.2 63258 2wozA 318 57.22 2f15A 96 58.73 b.1.18.21 146993 1n1tA 641 59.50 b.29.1.15,b.68.1.1 79821,79822 1q0xH 221 60.43 b.1.1.1,b.1.1.2 95517,95518 2q7nA 488 62.02 3e17A 88 62.70 2yzjA 169 63.50 1aozA 552 64.39 b.6.1.3,b.6.1.3,b.6.1.3 23124,23125,23126 2gmsA 390 64.59 3ec7A 357 64.83 3m6sA 331 65.83 1uaiA 224 65.91 b.29.1.18 107761 1ro2A 216 66.19 d.264.1.2 97665 2wanA 921 67.40 1i3zA 103 69.15 d.93.1.1 83667 2bklA 695 69.59 1dgwY 93 73.09 3b8xA 390 73.24 2glxA 332 74.48 2we2A 286 75.88 2bsyA 278 78.72 b.85.4.1,b.85.4.1 129129,129130 3fd4A 191 80.21 2otnA 308 82.46 3dtyA 398 82.66 1ro0A 216 84.95 d.264.1.2 97664 1c7nA 399 85.22 c.67.1.3 34413 2pndA 119 85.28 1ag6A 99 85.49 b.6.1.1 22857 1rhsA 296 87.20 c.46.1.2,c.46.1.2 32703,32704 1zh8A 340 88.25 c.2.1.3,d.81.1.5 125077,125078