# List of top-scoring protein chains for t06-w0.5-1-CB_burial_14_7-0.3-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://compbio.soe.ucsc.edu/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1tq5A 242 2.78e-20 b.82.1.12 119311 2p17A 277 6.90e-19 1j1lA 290 1.69e-18 b.82.1.12 90766 2qdrA 303 4.85e-17 2h0vA 338 1.44e-15 1sefA 274 3.63e-15 b.82.1.11 105452 1sfnA 246 4.40e-15 b.82.1.11 105496 1rc6A 261 2.83e-14 b.82.1.11 97287 2vqaA 361 3.21e-14 1juhA 350 4.26e-14 b.82.1.5 71884 2vecA 256 5.90e-14 2phdA 368 1.52e-12 b.82.1.23 149468 1j58A 385 3.69e-12 b.82.1.2 71531 2o1qA 145 4.02e-12 b.82.1.21 148547 3ebrA 159 5.97e-12 2d40A 354 8.77e-12 b.82.1.23 146454 3cjxA 165 1.28e-11 3ht1A 145 2.17e-11 3ibmA 167 2.22e-11 3kgzA 156 2.39e-11 1vj2A 126 8.11e-11 b.82.1.10 100796 3h7jA 243 8.85e-11 2q1zB 195 9.23e-11 2pfwA 116 1.07e-10 3l2hA 162 1.59e-10 1o4tA 133 1.75e-10 b.82.1.9 86622 2oa2A 148 1.80e-10 2qnkA 286 1.97e-10 1lr5A 163 3.20e-10 b.82.1.2 74215 1yhfA 115 3.50e-10 b.82.1.9 123176 3h8uA 125 3.51e-10 3cewA 125 4.33e-10 3fjsA 114 7.83e-10 1y3tA 337 9.54e-10 b.82.1.5 122600 1v70A 105 1.27e-09 b.82.1.9 113555 3i7dA 163 1.51e-09 2b8mA 117 3.95e-09 b.82.1.18 128092 3es1A 172 5.76e-09 1fi2A 201 9.12e-09 b.82.1.2 59845 2gu9A 113 1.01e-08 2et1A 201 1.60e-08 b.82.1.2 132351 3c3vA 510 1.72e-08 2pytA 133 1.83e-08 b.82.1.24 149957 2ozjA 114 2.59e-08 2q30A 110 3.05e-08 2e9qA 459 3.30e-08 2d5fA 493 3.82e-08 2gc1A 188 6.47e-08 b.82.1.7 134928 3d82A 102 6.49e-08 1x82A 190 7.57e-08 b.82.1.7 114955 2o8qA 134 7.83e-08 3eqeA 171 1.09e-07 2fqpA 97 1.63e-07 3lagA 98 2.86e-07 2gm6A 208 4.51e-07 b.82.1.19 147130 1y9qA 192 5.17e-07 a.35.1.8,b.82.1.15 116592,116593 1zrrA 179 6.19e-07 b.82.1.6 125555 2f4pA 147 7.21e-07 b.82.1.9 132933 3lwcA 119 1.14e-06 2ea7A 434 1.26e-06 2oziA 98 2.59e-06 3bcwA 123 2.66e-06 3fz3A 531 6.57e-06 1xjaA 178 6.75e-06 b.82.4.1 115382 2b5hA 200 1.29e-05 b.82.1.19 127894 2i45A 107 3.41e-05 1dgwA 178 4.27e-05 b.82.1.2 28090 1yfuA 174 4.90e-05 b.82.1.20 123094 2bnmA 198 9.15e-05 a.35.1.3,b.82.1.10 128835,128836 3elnA 200 9.27e-05 b.82.1.19 158185 3g7dA 443 0.000170 3esgA 193 0.000334 2opkA 112 0.000758 1vr3A 191 0.001116 b.82.1.6 120431 3d0jA 140 0.001293 1zvfA 176 0.001578 b.82.1.20 146029 3gbgA 276 0.002062 2pamA 141 0.01290 b.82.1.1 149348 3es4A 116 0.02179 2pa7A 141 0.03469 b.82.1.1 149339 1qwrA 319 0.06352 b.82.1.3 96491 1yllA 200 0.06699 b.82.1.17 123653 1o5uA 101 0.1875 b.82.1.8 92518 3fhiB 154 0.1900 2vpvA 166 0.2437 1rl3A 288 0.2713 b.82.3.2,b.82.3.2 104975,104976 2qvsB 310 0.3625 1vrbA 342 0.3923 b.82.2.11 120450 3ejkA 174 0.5271 1q3eA 207 0.5836 b.82.3.2 95669 2d93A 134 0.6942 2h6cA 232 0.6966 a.4.5.4,b.82.3.2 147232,147233 1zybA 232 0.7611 a.4.5.4,b.82.3.2 125815,125816 1hw5A 210 1.145 a.4.5.4,b.82.3.2 16098,28137 1pmi 440 1.165 2fmyA 220 1.210 2h6bA 250 1.249 a.4.5.4,b.82.3.2 147228,147229 3bb6A 127 1.326 b.82.2.13 155045 1zx5A 300 1.520 b.82.1.3 125763 2arcA 164 1.526 b.82.4.1 28148 3e97A 231 1.700 1vp6A 138 2.053 b.82.3.2 113939 3idbB 161 2.120 3h3zA 235 2.878 3eo6A 106 2.975 3d0sA 227 3.045 3fx3A 237 3.255 3dl3A 119 3.318 b.82.2.13 157762 3bpzA 202 3.353 3dv8A 220 3.473 1e5rA 290 3.670 b.82.2.4 59276 3e5xA 250 4.278 1pmiA 440 5.920 b.82.1.3 28114 2gauA 232 6.038 a.4.5.4,b.82.3.2 134894,134895 1wgpA 137 6.389 b.82.3.2 114619 2ptmA 198 6.895 3e6cC 250 8.009 a.4.5.4,b.82.3.2 158038,158039 2pqqA 149 8.270 2zcwA 202 8.635 3k3oA 371 8.817 2pia 321 11.55 1q0xH 221 12.20 b.1.1.1,b.1.1.2 95517,95518 1xfpA 142 12.46 b.1.1.1 109587 1f46A 140 12.95 d.129.4.1 59643 3gydA 187 13.71 2rg4A 216 13.89 2v4nA 254 14.47 1a62A 130 15.80 a.140.3.1,b.40.4.5 64708,64709 2wqkA 251 16.13 2gopA 347 16.91 2fp8A 322 16.97 2cohA 202 18.07 a.4.5.4,b.82.3.2 130677,130678 1e6eB 128 19.39 d.15.4.1 59300 2pndA 119 19.50 3hqxA 111 20.37 3a8jA 364 20.58 2zdbA 195 23.22 3biaX 116 25.44 1xi1A 575 25.60 c.55.3.5,e.8.1.1 115309,115310 3dkqA 243 27.02 1exuA 267 30.91 b.1.1.2,d.19.1.1 20864,38324 1fo0A 116 33.06 b.1.1.1 20610 2phjA 251 33.44 2fx7H 228 34.64 b.1.1.1,b.1.1.2 134276,134277 1iakA 199 35.33 b.1.1.2,d.19.1.1 21625,38199 3d8cA 349 35.43 1ru4A 400 35.89 b.80.1.9 97836 1kb5B 117 37.56 b.1.1.1 20632 3dn7A 194 38.64 1yjdC 140 39.06 b.1.1.1 144649 1xruA 282 39.40 b.82.1.13 122262 2uwiA 142 39.59 1o5lA 213 43.06 b.82.3.2 92506 3lhnA 126 43.88 1wcdJ 441 43.98 b.121.4.9 120887 1bd8A 156 45.72 d.211.1.1 19157 3gi9H 223 46.71 1am2 199 46.82 1eybA 471 47.51 b.82.1.4 28115 3cf6E 694 47.81 3dqzA 258 47.82 3gqnA 772 48.39 2we3A 264 48.81 1j9lA 247 49.33 c.106.1.1 62762 1uvqA 197 49.86 b.1.1.2,d.19.1.1 100062,100063 2qjvA 270 50.01 3k05A 200 51.66 1zvyA 136 54.61 b.1.1.1 144780 1oaqH 121 56.00 b.1.1.1 92707 3a8kA 364 56.41 1fit 147 56.90 3d9aH 210 57.03 2z69A 154 58.14 2piaA 321 58.53 b.43.4.2,c.25.1.2,d.15.4.2 25663,31553,37704 1vloA 381 60.96 b.44.2.1,d.250.1.1 108838,108839 3lb5A 161 61.09 3ksvA 149 62.22 2chuA 296 62.53 c.92.2.4 130485 3gz5A 240 62.62 3flhA 124 63.28 1j05B 121 64.05 b.1.1.1 90736 1jguH 217 65.00 b.1.1.1,b.1.1.2 66688,66689 2o5fA 171 65.68 d.113.1.2 148596 2hp7A 183 65.87 3mdpA 142 67.40 2bt6A 108 67.49 d.15.4.1 129152 3gsnB 243 67.56 1x0hA 112 69.55 d.332.1.1 121547 2o16A 160 72.58 d.37.1.1 145710 1mvfA 135 72.96 b.1.1.1 85141 1fitA 147 73.02 d.13.1.1 37499 3hqkP 219 73.03 2psbA 320 73.91 c.153.1.1 149819 1kqnA 279 75.17 c.26.1.3 77492 2zjtA 247 75.99 1h5bB 113 76.37 b.1.1.1 60639 3b5gA 111 77.84 2bgcA 238 78.28 a.4.5.4,b.82.3.3 128458,128459 2or7A 115 78.80 1rhsA 296 81.98 c.46.1.2,c.46.1.2 32703,32704 1t3kA 152 82.10 c.46.1.1 106357 1qouA 181 82.31 b.17.1.1 23707 1ogaE 252 82.44 b.1.1.1,b.1.1.2 86992,86993 1rhs 296 82.52 2df7A 458 82.54 b.121.4.9 131449 1bd8 156 83.67 2pwwA 127 84.34 d.129.11.1 149905 1h3zA 109 84.93 b.34.9.2 83471 2bdrA 175 84.99 b.82.1.14 128342 1mvuB 121 87.07 b.1.1.1 91475 1frdA 98 87.21 d.15.4.1 37648 2bgiA 272 87.76 2bb6A 414 88.07 1kxvC 121 88.09 b.1.1.1 73190