# List of top-scoring protein chains for t06-w0.5-1-CB8-sep9-0.3-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://compbio.soe.ucsc.edu/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1tq5A 242 1.46e-16 b.82.1.12 119311 1j1lA 290 2.11e-16 b.82.1.12 90766 2p17A 277 7.55e-16 2h0vA 338 1.40e-13 2qdrA 303 1.75e-13 1juhA 350 4.48e-13 b.82.1.5 71884 1sefA 274 1.32e-12 b.82.1.11 105452 1sfnA 246 1.35e-12 b.82.1.11 105496 2vqaA 361 1.48e-12 2vecA 256 1.40e-11 1rc6A 261 1.97e-11 b.82.1.11 97287 2phdA 368 3.10e-11 b.82.1.23 149468 1j58A 385 1.98e-10 b.82.1.2 71531 2d40A 354 4.61e-10 b.82.1.23 146454 2o1qA 145 6.01e-10 b.82.1.21 148547 3cjxA 165 1.70e-09 3ibmA 167 1.71e-09 3ebrA 159 1.74e-09 3kgzA 156 1.98e-09 3ht1A 145 2.16e-09 2q1zB 195 2.52e-09 3h7jA 243 3.33e-09 1vj2A 126 3.58e-09 b.82.1.10 100796 1o4tA 133 7.95e-09 b.82.1.9 86622 2pfwA 116 8.65e-09 1lr5A 163 9.75e-09 b.82.1.2 74215 3c3vA 510 1.02e-08 3l2hA 162 1.09e-08 2qnkA 286 1.17e-08 2e9qA 459 1.19e-08 3i7dA 163 1.44e-08 3cewA 125 1.45e-08 1yhfA 115 1.86e-08 b.82.1.9 123176 2oa2A 148 1.95e-08 1y3tA 337 2.20e-08 b.82.1.5 122600 3fjsA 114 3.93e-08 1v70A 105 4.07e-08 b.82.1.9 113555 3h8uA 125 5.12e-08 2d5fA 493 7.43e-08 1fi2A 201 1.62e-07 b.82.1.2 59845 3es1A 172 1.63e-07 2gu9A 113 1.78e-07 2et1A 201 2.22e-07 b.82.1.2 132351 2b8mA 117 2.44e-07 b.82.1.18 128092 2ea7A 434 4.91e-07 2gc1A 188 5.94e-07 b.82.1.7 134928 2q30A 110 6.14e-07 2pytA 133 6.18e-07 b.82.1.24 149957 1x82A 190 6.70e-07 b.82.1.7 114955 2o8qA 134 9.57e-07 2ozjA 114 9.73e-07 3fz3A 531 1.35e-06 3lagA 98 1.66e-06 1y9qA 192 2.21e-06 a.35.1.8,b.82.1.15 116592,116593 3d82A 102 2.42e-06 2fqpA 97 2.64e-06 3eqeA 171 3.96e-06 2gm6A 208 5.74e-06 b.82.1.19 147130 1zrrA 179 7.28e-06 b.82.1.6 125555 2f4pA 147 8.34e-06 b.82.1.9 132933 3lwcA 119 1.07e-05 3bcwA 123 1.72e-05 2oziA 98 1.73e-05 1xjaA 178 7.05e-05 b.82.4.1 115382 3g7dA 443 0.000104 2b5hA 200 0.000151 b.82.1.19 127894 1dgwA 178 0.000226 b.82.1.2 28090 2i45A 107 0.000385 3elnA 200 0.000643 b.82.1.19 158185 2bnmA 198 0.000900 a.35.1.3,b.82.1.10 128835,128836 1yfuA 174 0.000924 b.82.1.20 123094 3gbgA 276 0.002078 1vr3A 191 0.002110 b.82.1.6 120431 3esgA 193 0.002803 2opkA 112 0.006023 3d0jA 140 0.006348 1zvfA 176 0.007340 b.82.1.20 146029 1pmi 440 0.01317 2pamA 141 0.01438 b.82.1.1 149348 2pa7A 141 0.03193 b.82.1.1 149339 3es4A 116 0.03658 1vrbA 342 0.05666 b.82.2.11 120450 3k3oA 371 0.06789 2wwuA 371 0.1439 3d8cA 349 0.1577 1qwrA 319 0.2077 b.82.1.3 96491 2vpvA 166 0.2195 3ejkA 174 0.2491 2yu1A 451 0.2559 1o5uA 101 0.2602 b.82.1.8 92518 1yllA 200 0.2900 b.82.1.17 123653 1zx5A 300 0.3074 b.82.1.3 125763 3fhiB 154 0.4087 1rl3A 288 0.5135 b.82.3.2,b.82.3.2 104975,104976 1h2kA 349 0.5765 b.82.2.6 76572 3k2oA 336 0.5862 1vp6A 138 0.8175 b.82.3.2 113939 1q3eA 207 0.9450 b.82.3.2 95669 1pmiA 440 1.041 b.82.1.3 28114 2arcA 164 1.234 b.82.4.1 28148 3bb6A 127 1.699 b.82.2.13 155045 2fmyA 220 1.806 3d0sA 227 1.882 2h6cA 232 2.093 a.4.5.4,b.82.3.2 147232,147233 1o7fA 469 2.488 a.4.5.31,b.82.3.2,b.82.3.2 81131,81132,81133 3gydA 187 2.836 2d93A 134 2.844 1e5rA 290 2.911 b.82.2.4 59276 3idbB 161 2.946 1hw5A 210 3.005 a.4.5.4,b.82.3.2 16098,28137 2h6bA 250 3.107 a.4.5.4,b.82.3.2 147228,147229 3e5xA 250 3.394 3e6cC 250 3.415 a.4.5.4,b.82.3.2 158038,158039 2qvsB 310 3.569 1zybA 232 4.106 a.4.5.4,b.82.3.2 125815,125816 3h3zA 235 4.540 3bpzA 202 4.685 3dl3A 119 5.021 b.82.2.13 157762 2pia 321 5.418 1eybA 471 5.550 b.82.1.4 28115 2pqqA 149 5.611 3e97A 231 5.828 2gauA 232 6.768 a.4.5.4,b.82.3.2 134894,134895 3eo6A 106 6.792 2ptmA 198 7.477 2rg4A 216 7.805 2zcwA 202 9.405 1v2dA 381 10.00 c.67.1.1 108281 3fx3A 237 10.58 3dv8A 220 10.65 3li4A 314 11.61 2bdrA 175 11.71 b.82.1.14 128342 2piaA 321 11.89 b.43.4.2,c.25.1.2,d.15.4.2 25663,31553,37704 3hqxA 111 12.68 3i1cA 324 13.76 2zdbA 195 17.24 1b5pA 385 17.31 c.67.1.1 90403 2qjvA 270 18.19 3dn7A 194 18.24 2b3zA 373 18.57 c.71.1.2,c.97.1.2 127807,127808 1upiA 225 18.76 b.82.1.1 99757 1wgpA 137 19.06 b.82.3.2 114619 1o0yA 260 19.33 c.1.10.1 80756 1mpxA 615 20.18 b.18.1.13,c.69.1.21 85041,85042 2cohA 202 21.54 a.4.5.4,b.82.3.2 130677,130678 3cf6E 694 23.68 1oi6A 205 23.79 b.82.1.1 103940 2bgiA 272 24.99 2b9uA 176 25.90 1wstA 417 25.91 c.67.1.1 121244 2ok8A 316 27.96 1a62A 130 29.24 a.140.3.1,b.40.4.5 64708,64709 1bw0A 416 30.77 c.67.1.1 34385 1o5lA 213 31.13 b.82.3.2 92506 3hkxA 283 33.62 3mdpA 142 34.19 3menA 362 34.43 2c0zA 216 34.80 b.82.1.1 129615 1crzA 403 36.28 b.68.4.1,c.51.2.1 27629,33211 2iw1A 374 37.71 c.87.1.8 137738 2ixkA 184 37.78 3ly1A 354 38.23 1rhs 296 38.33 2fukA 220 39.74 c.69.1.36 147049 2gwfA 157 41.54 c.46.1.4 135802 2a2kA 175 43.22 2pblA 262 44.25 c.69.1.2 149367 1d2fA 390 46.59 c.67.1.3 34411 2gmsA 390 47.92 2bklA 695 50.11 1u00A 227 51.54 a.8.4.1,b.130.1.1 112900,112901 1xfpA 142 55.54 b.1.1.1 109587 1c3pA 375 55.67 c.42.1.2 32606 3dr4A 391 55.81 3ce1A 168 58.98 2bgcA 238 59.55 a.4.5.4,b.82.3.3 128458,128459 1xsqA 168 59.56 b.82.1.14 115999 1z9nA 177 60.28 2qr5A 582 63.26 b.69.7.2,c.69.1.33 151278,151279 3b8xA 390 63.80 1vqoB 338 64.38 b.43.3.2 120363 2hp7A 183 64.80 1ep0A 185 65.95 b.82.1.1 28080 3h1wA 393 69.31 1e6eB 128 69.51 d.15.4.1 59300 1v04A 355 69.73 b.68.6.2 100240 1o4sA 389 72.58 c.67.1.1 86620 2z69A 154 72.79 1svvA 359 75.05 c.67.1.1 106054 1ru4A 400 75.72 b.80.1.9 97836 3fm0A 345 76.02 2oyzA 94 76.65 b.82.1.22 149082 3biaX 116 78.45 1j31A 262 78.87 d.160.1.2 90808 2cwsA 237 79.03 3c5mA 396 79.24 3a63A 365 80.39 1ogaE 252 80.84 b.1.1.1,b.1.1.2 86992,86993 2bnuB 241 81.33 b.1.1.1,b.1.1.2 146159,146160 2cm1A 260 81.77 3gqiB 226 82.68 3cmgA 667 82.95 3ew8A 388 83.92 3frkA 373 87.92 3dkqA 243 88.61 1ywkA 289 89.89 b.82.1.13 124155