# List of top-scoring protein chains for t06-80-60-80-str2+near-backbone-11-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://compbio.soe.ucsc.edu/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1tq5A 242 0.01117 b.82.1.12 119311 1j1lA 290 0.02574 b.82.1.12 90766 1sfnA 246 0.02735 b.82.1.11 105496 2p17A 277 0.02855 2qdrA 303 0.03832 1sefA 274 0.04699 b.82.1.11 105452 2h0vA 338 0.05198 1rc6A 261 0.07405 b.82.1.11 97287 2vqaA 361 0.07506 2vecA 256 0.1289 1j58A 385 0.1375 b.82.1.2 71531 1y3tA 337 0.1632 b.82.1.5 122600 1juhA 350 0.1651 b.82.1.5 71884 2d5fA 493 0.1807 2d40A 354 0.2426 b.82.1.23 146454 3ebrA 159 0.2522 2e9qA 459 0.2570 2qnkA 286 0.2597 2phdA 368 0.2859 b.82.1.23 149468 3c3vA 510 0.3334 2o1qA 145 0.4373 b.82.1.21 148547 3h7jA 243 0.4375 2q1zB 195 0.4497 3cjxA 165 0.5015 1lr5A 163 0.5530 b.82.1.2 74215 1vj2A 126 0.6739 b.82.1.10 100796 3fz3A 531 0.6799 3ibmA 167 0.7532 3ht1A 145 0.8018 3kgzA 156 0.9210 2pfwA 116 0.9331 1o4tA 133 0.9405 b.82.1.9 86622 2ea7A 434 0.9655 1qwrA 319 1.241 b.82.1.3 96491 2b8mA 117 1.251 b.82.1.18 128092 3i7dA 163 1.396 3h8uA 125 1.438 3g7dA 443 1.512 1v70A 105 1.602 b.82.1.9 113555 2ozjA 114 1.629 2q30A 110 1.643 2pytA 133 1.806 b.82.1.24 149957 3fjsA 114 1.977 3eqeA 171 2.361 2oa2A 148 2.575 1x82A 190 2.613 b.82.1.7 114955 1fi2A 201 2.618 b.82.1.2 59845 2f4pA 147 2.632 b.82.1.9 132933 3l2hA 162 2.707 3lwcA 119 2.802 2et1A 201 3.348 b.82.1.2 132351 1yllA 200 3.704 b.82.1.17 123653 1yhfA 115 3.824 b.82.1.9 123176 2gm6A 208 3.845 b.82.1.19 147130 2o8qA 134 4.011 3cewA 125 4.709 2gc1A 188 4.915 b.82.1.7 134928 2gu9A 113 4.974 2fqpA 97 5.350 1zx5A 300 5.559 b.82.1.3 125763 3esgA 193 5.910 1y9qA 192 6.179 a.35.1.8,b.82.1.15 116592,116593 3lagA 98 6.811 1xjaA 178 6.955 b.82.4.1 115382 2bnmA 198 7.002 a.35.1.3,b.82.1.10 128835,128836 3d82A 102 7.488 2qvsB 310 7.819 1pmi 440 8.551 2b5hA 200 9.270 b.82.1.19 127894 3elnA 200 9.642 b.82.1.19 158185 2opkA 112 10.50 1yfuA 174 11.50 b.82.1.20 123094 2oziA 98 12.68 3bcwA 123 15.08 1zvfA 176 17.36 b.82.1.20 146029 1dgwA 178 17.63 b.82.1.2 28090 2i45A 107 19.43 1pmiA 440 21.32 b.82.1.3 28114 2vpvA 166 21.49 2arcA 164 22.49 b.82.4.1 28148 1vr3A 191 23.25 b.82.1.6 120431 1eybA 471 23.50 b.82.1.4 28115 3h1wA 393 23.59 1rl3A 288 25.73 b.82.3.2,b.82.3.2 104975,104976 2wfpA 394 26.16 3es4A 116 31.87 1o5uA 101 32.62 b.82.1.8 92518 3k2oA 336 33.28 2pa7A 141 34.50 b.82.1.1 149339 1vrbA 342 37.70 b.82.2.11 120450 3es1A 172 39.74 2pamA 141 40.61 b.82.1.1 149348 3hqxA 111 46.01 1o7fA 469 46.59 a.4.5.31,b.82.3.2,b.82.3.2 81131,81132,81133 1zrrA 179 49.96 b.82.1.6 125555 1ywkA 289 50.14 b.82.1.13 124155 3fhiB 154 56.64 2yu1A 451 57.43 3eo6A 106 58.57 2wwuA 371 67.87 2h6bA 250 68.47 a.4.5.4,b.82.3.2 147228,147229 3d0jA 140 73.67 3k3oA 371 75.42 2qjvA 270 80.35 2oyzA 94 84.10 b.82.1.22 149082 2wn4A 463 88.47