# List of top-scoring protein chains for T0582.t04-w0.5 hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://compbio.soe.ucsc.edu/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1sq4A 278 2.26e-12 b.82.1.11 98962 1j58A 385 3.87e-12 b.82.1.2 71531 2v09A 385 4.21e-12 2uy8A 385 4.53e-12 2uybA 385 4.98e-12 2uy9A 385 7.00e-12 2uyaA 383 7.14e-12 1tq5A 242 3.66e-11 b.82.1.12 119311 2vqaA 361 2.90e-08 1j1lA 290 2.96e-08 b.82.1.12 90766 2qdrA 303 8.10e-07 2p17A 277 2.77e-06 1vj2A 126 6.78e-06 b.82.1.10 100796 2pfwA 116 1.82e-05 3ht1A 145 2.15e-05 3h7jA 243 2.35e-05 2z2sB 203 2.50e-05 2q1zB 195 3.60e-05 3cjxA 165 6.22e-05 1sfnA 246 6.58e-05 b.82.1.11 105496 1o4tA 133 7.45e-05 b.82.1.9 86622 3i7dA 163 8.94e-05 2et7A 201 0.000147 b.82.1.2 132352 2eteA 201 0.000155 b.82.1.2 132354 2et1A 201 0.000155 b.82.1.2 132351 3l2hA 162 0.000247 2f4pA 147 0.000336 b.82.1.9 132933 1rc6A 261 0.000381 b.82.1.11 97287 2o8qA 134 0.000631 1sefA 274 0.000647 b.82.1.11 105452 1y3tA 337 0.000846 b.82.1.5 122600 3ibmA 167 0.000904 2h0vA 338 0.000939 1lr5A 163 0.002472 b.82.1.2 74215 3h8uA 125 0.004192 2vecA 256 0.004260 1yhfA 115 0.009242 b.82.1.9 123176 3d82A 102 0.009652 3kgzA 156 0.01098 3ebrA 159 0.01258 2q30A 110 0.01351 1v70A 105 0.01457 b.82.1.9 113555 1uijA 416 0.02310 b.82.1.2,b.82.1.2 107866,107867 3jzvA 166 0.02504 1yfuA 174 0.02595 b.82.1.20 123094 3bu7A 394 0.02720 b.82.1.23 155593 1juhA 350 0.02993 b.82.1.5 71884 1uikA 418 0.03836 b.82.1.2,b.82.1.2 107878,107879 3cewA 125 0.04520 1ipkA 416 0.05212 b.82.1.2,b.82.1.2 71264,71265 1vr3A 191 0.05874 b.82.1.6 120431 2fqpA 97 0.05876 1ipjA 416 0.06105 b.82.1.2,b.82.1.2 71258,71259 3balA 153 0.06769 3lagA 98 0.07853 1zvfA 176 0.08063 b.82.1.20 146029 2d40A 354 0.09447 b.82.1.23 146454 2pytA 133 0.2213 b.82.1.24 149957 3es1A 172 0.2229 2i45A 107 0.2424 3h50A 114 0.2756 2gu9A 113 0.2773 2oa2A 148 0.3024 2opkA 112 0.3115 2d5fA 493 0.4088 1od5A 492 0.4091 b.82.1.2,b.82.1.2 86832,86833 3lwcA 119 0.5379 2eaaA 433 0.6990 2o1qA 145 0.7803 b.82.1.21 148547 2gc1A 188 0.7845 b.82.1.7 134928 2ea7A 434 0.8095 1x82A 190 0.8659 b.82.1.7 114955 1qxrA 189 0.8670 b.82.1.7 96552 3fe5A 285 0.9471 2phdA 368 1.018 b.82.1.23 149468 3eqeA 171 1.129 1qwrA 319 1.152 b.82.1.3 96491 2b8mA 117 1.237 b.82.1.18 128092 2cavA 445 1.251 b.82.1.2,b.82.1.2 28094,28095 2e9qA 459 1.283 1j3qA 190 1.559 b.82.1.7 90821 3es4A 116 1.769 3fjsA 114 2.318 1fxzA 476 2.367 b.82.1.2,b.82.1.2 65059,65060 1ucxA 476 2.439 b.82.1.2,b.82.1.2 99192,99193 1ud1A 476 2.819 b.82.1.2,b.82.1.2 99202,99203 2ozjA 114 2.942 2q4sA 200 3.098 b.82.1.19 139877 3elnA 200 3.100 b.82.1.19 158185 2cv6A 424 3.140 1xjaA 178 3.594 b.82.4.1 115382 2arcA 164 3.602 b.82.4.1 28148 2aacA 177 3.643 b.82.4.1 28150 2araA 149 3.687 b.82.4.1 28152 1lknA 89 3.872 b.82.1.8 84624 2gm6A 208 3.876 b.82.1.19 147130 1y9qA 192 3.944 a.35.1.8,b.82.1.15 116592,116593 1vrbA 342 4.067 b.82.2.11 120450 2ic1A 205 4.290 b.82.1.19 147600 1o5uA 101 4.866 b.82.1.8 92518 3eo6A 106 5.693 2phlA 397 7.121 b.82.1.2,b.82.1.2 28082,28083 3fz3A 531 7.423 2b9uA 176 12.69 1wltA 196 12.82 b.82.1.1 121013 1cauA 181 13.58 b.82.1.2 28102 1dgwA 178 13.72 b.82.1.2 28090 2bnmA 198 15.55 a.35.1.3,b.82.1.10 128835,128836 3bcwA 123 18.50 2pa7A 141 18.75 b.82.1.1 149339 1e5rA 290 20.32 b.82.2.4 59276 3hqxA 111 22.89 1cauB 184 22.91 b.82.1.2 28103 2vz8A 2512 27.91 3kscA 496 31.04 2ka9A 189 32.14 2qnkA 286 36.67 3c3vA 510 37.12 3kglA 466 37.49 2yu1A 451 45.88 3h1wA 393 51.78 2wfpA 394 51.79 2c2bA 486 54.71 3dl3A 119 57.79 b.82.2.13 157762 1e5xA 486 58.07 c.79.1.1 59283 3h7cX 383 65.52 2q3uA 383 65.52 d.126.1.6 139809 1lwdA 413 68.41 c.77.1.1 78265 2bygA 117 69.06 b.36.1.1 129480 2dbnA 461 69.43 3h7kA 383 72.06 1c3rA 375 73.78 c.42.1.2 32607 1yllA 200 74.96 b.82.1.17 123653 1c3pA 375 79.60 c.42.1.2 32606 2awxA 105 82.19 2fe5A 94 86.59 b.36.1.1 133323