# List of top-scoring protein chains for t04-w0.5-1-str2-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://compbio.soe.ucsc.edu/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2qdrA 303 1.38e-16 1tq5A 242 1.73e-13 b.82.1.12 119311 2vecA 256 1.77e-13 2p17A 277 5.96e-13 1j1lA 290 1.09e-12 b.82.1.12 90766 1rc6A 261 1.39e-12 b.82.1.11 97287 1sefA 274 2.41e-12 b.82.1.11 105452 3cjxA 165 6.83e-12 2o1qA 145 1.42e-11 b.82.1.21 148547 2phdA 368 2.69e-11 b.82.1.23 149468 3ebrA 159 2.77e-11 2d40A 354 5.06e-11 b.82.1.23 146454 1y3tA 337 1.17e-10 b.82.1.5 122600 1juhA 350 1.18e-10 b.82.1.5 71884 1sfnA 246 1.62e-10 b.82.1.11 105496 2h0vA 338 1.91e-10 2q1zB 195 4.87e-10 2pfwA 116 5.99e-10 3kgzA 156 1.34e-09 3ibmA 167 1.41e-09 2vqaA 361 2.25e-09 2oa2A 148 2.41e-09 3i7dA 163 2.56e-09 1o4tA 133 2.87e-09 b.82.1.9 86622 1j58A 385 2.88e-09 b.82.1.2 71531 1vj2A 126 3.33e-09 b.82.1.10 100796 2ozjA 114 3.59e-09 3ht1A 145 4.87e-09 1v70A 105 7.19e-09 b.82.1.9 113555 3cewA 125 8.37e-09 2q30A 110 8.71e-09 3h8uA 125 9.10e-09 1yhfA 115 9.52e-09 b.82.1.9 123176 2e9qA 459 9.80e-09 1lr5A 163 1.39e-08 b.82.1.2 74215 3c3vA 510 1.39e-08 2b8mA 117 1.90e-08 b.82.1.18 128092 2qnkA 286 1.99e-08 3h7jA 243 2.08e-08 2d5fA 493 2.44e-08 2o8qA 134 2.95e-08 2gu9A 113 4.14e-08 2et1A 201 4.17e-08 b.82.1.2 132351 2ea7A 434 5.26e-08 2gc1A 188 5.85e-08 b.82.1.7 134928 3l2hA 162 6.47e-08 1od5A 492 6.48e-08 b.82.1.2,b.82.1.2 86832,86833 3es1A 172 6.51e-08 3fz3A 531 9.91e-08 3lwcA 119 1.47e-07 1fi2A 201 3.26e-07 b.82.1.2 59845 1y9qA 192 3.45e-07 a.35.1.8,b.82.1.15 116592,116593 3fjsA 114 3.91e-07 2pytA 133 5.68e-07 b.82.1.24 149957 3d82A 102 7.78e-07 1x82A 190 1.02e-06 b.82.1.7 114955 2oziA 98 1.29e-06 3lagA 98 2.10e-06 3eqeA 171 2.26e-06 2fqpA 97 2.65e-06 2atfA 200 3.31e-06 b.82.1.19 127290 2phlA 397 3.42e-06 b.82.1.2,b.82.1.2 28082,28083 3elnA 200 3.43e-06 b.82.1.19 158185 3g7dA 443 5.11e-06 2b5hA 200 6.63e-06 b.82.1.19 127894 2f4pA 147 7.43e-06 b.82.1.9 132933 1cauB 184 9.86e-06 b.82.1.2 28103 3bcwA 123 1.53e-05 1dgwA 178 1.76e-05 b.82.1.2 28090 2bnmA 198 3.00e-05 a.35.1.3,b.82.1.10 128835,128836 1xjaA 178 4.15e-05 b.82.4.1 115382 2gm6A 208 4.70e-05 b.82.1.19 147130 1qxrA 189 0.000142 b.82.1.7 96552 2i45A 107 0.000171 1yfuA 174 0.000388 b.82.1.20 123094 1zrrA 179 0.000466 b.82.1.6 125555 1vr3A 191 0.000594 b.82.1.6 120431 2pamA 141 0.000719 b.82.1.1 149348 2opkA 112 0.001982 2vpvA 166 0.002147 1zvfA 176 0.002162 b.82.1.20 146029 2pa7A 141 0.002266 b.82.1.1 149339 3d0jA 140 0.002293 1zx5A 300 0.003241 b.82.1.3 125763 3h1wA 393 0.004059 2wfpA 394 0.004139 3gbgA 276 0.007390 3esgA 193 0.01543 1pmiA 440 0.03060 b.82.1.3 28114 3ejkA 174 0.03175 3k3oA 371 0.03633 3d8cA 349 0.04680 3es4A 116 0.04741 2yu1A 451 0.04956 2wwuA 371 0.06109 1pmi 440 0.1638 1h2kA 349 0.1758 b.82.2.6 76572 1e5rA 290 0.2466 b.82.2.4 59276 1o5uA 101 0.4517 b.82.1.8 92518 1nxmA 197 0.4644 b.82.1.1 86385 2rg4A 216 0.5450 1qwrA 319 0.5985 b.82.1.3 96491 2ptmA 198 0.6072 3bpzA 202 0.6130 1rl3A 288 0.6262 b.82.3.2,b.82.3.2 104975,104976 2qvsB 310 0.6481 1vrbA 342 0.7956 b.82.2.11 120450 2arcA 164 0.8406 b.82.4.1 28148 3k2oA 336 1.536 3fhiB 154 1.632 1o7fA 469 1.849 a.4.5.31,b.82.3.2,b.82.3.2 81131,81132,81133 2fmyA 220 1.885 3idbB 161 2.118 2ixkA 184 2.119 3eo6A 106 2.345 3hqxA 111 2.845 2zklA 369 3.232 1ne6A 283 3.807 b.82.3.2,b.82.3.2 91831,91832 2c0zA 216 3.901 b.82.1.1 129615 2a1xA 308 4.036 b.82.2.9 126022 1eybA 471 4.656 b.82.1.4 28115 2d93A 134 4.750 1wgpA 137 5.154 b.82.3.2 114619 3dl3A 119 5.403 b.82.2.13 157762 2qjvA 270 5.883 2oyzA 94 5.914 b.82.1.22 149082 3bb6A 127 6.243 b.82.2.13 155045 1npeA 267 6.723 b.68.5.1 92032 1dgwX 79 6.831 b.82.1.2 28091 3km5A 180 7.311 1omiA 248 8.227 b.82.3.3,a.4.5.4 87079,87080 2zwnA 339 9.053 1oi6A 205 9.769 b.82.1.1 103940 1s4cA 155 9.918 b.82.2.7 118860 1q3eA 207 10.64 b.82.3.2 95669 2z69A 154 10.66 1aohA 147 11.16 b.2.2.2 22401 1upiA 225 11.41 b.82.1.1 99757 2pqqA 149 11.89 1vp6A 138 12.07 b.82.3.2 113939 2b9uA 176 12.38 1ywkA 289 13.29 b.82.1.13 124155 1hw5A 210 13.96 a.4.5.4,b.82.3.2 16098,28137 1ep0A 185 15.12 b.82.1.1 28080 1xruA 282 16.15 b.82.1.13 122262 2qt5A 200 17.06 1zybA 232 19.16 a.4.5.4,b.82.3.2 125815,125816 3gdcA 288 19.86 3dkhA 559 20.26 3e97A 231 21.59 2we3A 264 21.71 2ajuH 219 21.74 2zooA 442 21.89 3gbnA 331 22.21 2h6bA 250 22.50 a.4.5.4,b.82.3.2 147228,147229 3dn7A 194 22.80 2cclA 158 22.80 b.2.2.2 130248 1bec 238 22.87 3cf6E 694 24.47 1cx4A 305 25.10 b.82.3.2,b.82.3.2 59099,59100 1xl4A 301 26.91 b.1.18.16,f.14.1.1 115430,115431 2bgcA 238 27.18 a.4.5.4,b.82.3.3 128458,128459 3emrA 310 27.30 1ru4A 400 27.50 b.80.1.9 97836 3e17A 88 27.53 3gydA 187 27.67 1kcvH 217 28.05 b.1.1.1,b.1.1.2 72315,72316 2hqsA 415 28.49 b.68.4.1,c.51.2.1 136662,136663 1rd8A 335 28.68 b.19.1.2 97308 1v0eA 666 29.75 b.68.1.2,b.108.1.3 113466,113467 2wqkA 251 29.78 2p4oA 306 30.00 b.68.6.3 149216 1o6gA 710 30.86 b.69.7.1,c.69.1.4 81087,81088 2v4nA 254 32.06 1ru7A 327 32.79 b.19.1.2 97837 1rvxA 327 32.99 b.19.1.2 97937 3httA 324 33.17 3i1cA 324 33.51 2wwjA 348 33.84 3g5wA 318 34.04 2phjA 251 34.11 1i6xA 209 34.54 a.4.5.4,b.82.3.2 83673,83674 2rftA 344 35.46 1yudA 170 36.49 b.82.1.16 124046 3mdpA 142 39.13 2ojhA 297 40.91 1u3nA 162 44.87 2cwsA 237 46.70 2gauA 232 47.24 a.4.5.4,b.82.3.2 134894,134895 1rydA 387 47.40 c.2.1.3,d.81.1.5 118801,118802 1kbvA 327 50.42 b.6.1.3,b.6.1.3 68395,68396 1yqcA 170 52.22 b.82.1.14 123877 2v5mA 388 52.53 3h4fA 336 53.42 2h6cA 232 53.80 a.4.5.4,b.82.3.2 147232,147233 1euwA 152 53.84 b.85.4.1 28349 1ruzH 328 54.06 b.19.1.2 97889 1i7pA 274 55.88 b.43.4.2,c.25.1.1 66048,66049 1o5lA 213 56.42 b.82.3.2 92506 1pv9A 348 56.90 c.55.2.1,d.127.1.1 95157,95158 2piaA 321 57.36 b.43.4.2,c.25.1.2,d.15.4.2 25663,31553,37704 2ok8A 316 57.77 3ehwA 164 58.19 b.85.4.1 158154 2ih8A 559 58.88 b.6.1.3,b.6.1.3,b.6.1.3 137407,137408,137409 3dv8A 220 58.95 3h3zA 235 61.00 3ce1A 168 64.39 3g7gA 158 64.52 2h6lA 146 69.12 d.290.1.3 136197 2ismA 352 69.43 1ruyH 328 70.29 b.19.1.2 97883 2bw4A 340 70.33 b.6.1.3,b.6.1.3 129320,129321 1s4iA 175 70.99 1w0pA 781 71.61 b.29.1.8,b.29.1.8,b.68.1.1 109038,109039,109040 1oh4A 179 72.97 b.18.1.18 92978 3dczA 207 73.03 2wvvA 450 73.49 3dkqA 243 74.64 1rvtH 328 75.92 b.19.1.2 97931 3c5oA 157 75.98 3m6sA 331 76.63 2we0A 286 77.39 2hy1A 280 78.43 d.159.1.11 147437 1rv0H 328 78.73 b.19.1.2 97895 3fm2A 135 79.06 2fvkA 559 79.40 b.92.1.3,c.1.9.6 134204,134205 1zdsA 336 79.43 b.6.1.3,b.6.1.3 124952,124953 2o4uX 334 81.07 3fx3A 237 82.44 1kv7A 488 83.16 b.6.1.3,b.6.1.3,b.6.1.3 68873,68874,68875 3e6cC 250 83.25 a.4.5.4,b.82.3.2 158038,158039 2r9qA 370 85.39 1dgwY 93 86.04 2ouiA 360 86.10 2wjsA 608 87.65 2bdrA 175 87.78 b.82.1.14 128342 1mkaA 171 88.40 d.38.1.2 38543