# List of top-scoring protein chains for t04-w0.5-1-pb-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://compbio.soe.ucsc.edu/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2qdrA 303 6.52e-12 1tq5A 242 5.77e-10 b.82.1.12 119311 2vecA 256 1.36e-09 1sefA 274 1.53e-09 b.82.1.11 105452 1j1lA 290 1.92e-09 b.82.1.12 90766 2p17A 277 2.24e-09 1rc6A 261 2.29e-09 b.82.1.11 97287 3cjxA 165 6.58e-09 2phdA 368 1.03e-08 b.82.1.23 149468 2o1qA 145 2.24e-08 b.82.1.21 148547 2d40A 354 2.38e-08 b.82.1.23 146454 1y3tA 337 3.49e-08 b.82.1.5 122600 3ebrA 159 3.93e-08 1sfnA 246 6.99e-08 b.82.1.11 105496 1juhA 350 7.05e-08 b.82.1.5 71884 2h0vA 338 8.85e-08 2vqaA 361 1.15e-07 2pfwA 116 1.86e-07 2q1zB 195 2.18e-07 1j58A 385 2.26e-07 b.82.1.2 71531 3kgzA 156 3.03e-07 1o4tA 133 5.16e-07 b.82.1.9 86622 1vj2A 126 5.19e-07 b.82.1.10 100796 3ibmA 167 6.24e-07 2e9qA 459 7.61e-07 1v70A 105 1.09e-06 b.82.1.9 113555 3i7dA 163 1.11e-06 3cewA 125 1.26e-06 2oa2A 148 1.28e-06 3h8uA 125 1.29e-06 3c3vA 510 1.64e-06 3ht1A 145 1.70e-06 2ozjA 114 1.97e-06 2d5fA 493 2.00e-06 1yhfA 115 2.01e-06 b.82.1.9 123176 1lr5A 163 2.25e-06 b.82.1.2 74215 3h7jA 243 2.53e-06 2q30A 110 2.65e-06 2ea7A 434 3.21e-06 2et1A 201 3.38e-06 b.82.1.2 132351 2gu9A 113 4.61e-06 1od5A 492 4.68e-06 b.82.1.2,b.82.1.2 86832,86833 3es1A 172 4.83e-06 2b8mA 117 5.38e-06 b.82.1.18 128092 3l2hA 162 5.89e-06 2o8qA 134 6.47e-06 2qnkA 286 6.54e-06 2gc1A 188 9.64e-06 b.82.1.7 134928 3fz3A 531 1.25e-05 1fi2A 201 1.45e-05 b.82.1.2 59845 3lwcA 119 1.69e-05 1y9qA 192 2.62e-05 a.35.1.8,b.82.1.15 116592,116593 2pytA 133 3.74e-05 b.82.1.24 149957 3d82A 102 5.56e-05 3fjsA 114 6.98e-05 2oziA 98 7.69e-05 2phlA 397 0.000103 b.82.1.2,b.82.1.2 28082,28083 3elnA 200 0.000107 b.82.1.19 158185 3lagA 98 0.000111 3eqeA 171 0.000114 2atfA 200 0.000164 b.82.1.19 127290 1x82A 190 0.000169 b.82.1.7 114955 2fqpA 97 0.000204 2b5hA 200 0.000230 b.82.1.19 127894 1cauB 184 0.000307 b.82.1.2 28103 1dgwA 178 0.000363 b.82.1.2 28090 2f4pA 147 0.000392 b.82.1.9 132933 3g7dA 443 0.000587 1xjaA 178 0.000775 b.82.4.1 115382 3bcwA 123 0.000782 2bnmA 198 0.001333 a.35.1.3,b.82.1.10 128835,128836 2gm6A 208 0.001991 b.82.1.19 147130 2i45A 107 0.002281 1qxrA 189 0.003014 b.82.1.7 96552 1zrrA 179 0.004535 b.82.1.6 125555 1vr3A 191 0.004724 b.82.1.6 120431 1yfuA 174 0.007288 b.82.1.20 123094 3d0jA 140 0.02013 2opkA 112 0.02292 1zvfA 176 0.02557 b.82.1.20 146029 2vpvA 166 0.02589 2wfpA 394 0.02868 1zx5A 300 0.03811 b.82.1.3 125763 2pamA 141 0.03825 b.82.1.1 149348 3gbgA 276 0.04919 3h1wA 393 0.04959 2pa7A 141 0.05405 b.82.1.1 149339 1pmiA 440 0.09701 b.82.1.3 28114 3esgA 193 0.1000 2wwuA 371 0.1022 3k3oA 371 0.1125 3d8cA 349 0.1221 3ejkA 174 0.1249 2yu1A 451 0.1701 1h2kA 349 0.4073 b.82.2.6 76572 3es4A 116 0.4129 1pmi 440 0.7633 3k2oA 336 0.8177 1e5rA 290 0.8968 b.82.2.4 59276 1qwrA 319 1.067 b.82.1.3 96491 2rg4A 216 1.406 1o5uA 101 1.611 b.82.1.8 92518 2arcA 164 1.909 b.82.4.1 28148 1nxmA 197 1.983 b.82.1.1 86385 3bpzA 202 2.523 2ptmA 198 2.869 1vrbA 342 3.231 b.82.2.11 120450 3bb6A 127 3.866 b.82.2.13 155045 3fhiB 154 4.373 1rl3A 288 5.128 b.82.3.2,b.82.3.2 104975,104976 2qjvA 270 5.567 2ixkA 184 5.621 2d93A 134 5.631 2we3A 264 6.095 3eo6A 106 6.156 2zklA 369 6.340 3hqxA 111 6.343 2rftA 344 6.899 1ywkA 289 7.056 b.82.1.13 124155 2zooA 442 8.291 2c0zA 216 8.304 b.82.1.1 129615 1npeA 267 8.446 b.68.5.1 92032 2oyzA 94 9.003 b.82.1.22 149082 1wgpA 137 9.073 b.82.3.2 114619 2fmyA 220 9.285 1xruA 282 10.06 b.82.1.13 122262 1oi6A 205 10.42 b.82.1.1 103940 1q3eA 207 10.57 b.82.3.2 95669 1upiA 225 10.76 b.82.1.1 99757 2we0A 286 10.95 1eybA 471 10.99 b.82.1.4 28115 3dl3A 119 11.21 b.82.2.13 157762 2a1xA 308 11.28 b.82.2.9 126022 1dgwX 79 11.51 b.82.1.2 28091 1omiA 248 12.03 b.82.3.3,a.4.5.4 87079,87080 1ep0A 185 12.66 b.82.1.1 28080 3dkqA 243 13.46 2b9uA 176 13.60 1s4cA 155 14.38 b.82.2.7 118860 2zwnA 339 14.77 3gdcA 288 16.14 3idbB 161 16.32 2p4oA 306 16.39 b.68.6.3 149216 3httA 324 16.51 2wwjA 348 17.19 1ru7A 327 18.00 b.19.1.2 97837 1rvxA 327 18.06 b.19.1.2 97937 3g5wA 318 18.12 2d1sA 548 18.24 2pqqA 149 19.23 1aohA 147 19.28 b.2.2.2 22401 1ruzH 328 19.91 b.19.1.2 97889 1o7fA 469 20.00 a.4.5.31,b.82.3.2,b.82.3.2 81131,81132,81133 2qvsB 310 20.96 1o6gA 710 21.01 b.69.7.1,c.69.1.4 81087,81088 1hw5A 210 21.22 a.4.5.4,b.82.3.2 16098,28137 1rcy 151 21.30 3gbnA 331 21.37 2o62A 270 21.82 b.60.1.9,b.60.1.9 148622,148623 2ojhA 297 21.88 3lkwA 236 23.29 1ne6A 283 24.05 b.82.3.2,b.82.3.2 91831,91832 1rvtH 328 25.39 b.19.1.2 97931 2hqsA 415 25.52 b.68.4.1,c.51.2.1 136662,136663 1kbvA 327 26.00 b.6.1.3,b.6.1.3 68395,68396 1v3wA 173 26.02 b.81.1.5 100291 1rv0H 328 26.56 b.19.1.2 97895 2fomB 185 27.03 b.47.1.3 133884 3ehwA 164 27.31 b.85.4.1 158154 1ruyH 328 30.02 b.19.1.2 97883 2h6bA 250 30.02 a.4.5.4,b.82.3.2 147228,147229 2jkdA 187 30.09 3dn7A 194 31.80 2cclA 158 32.35 b.2.2.2 130248 1rd8A 335 33.03 b.19.1.2 97308 1xhdA 173 33.28 b.81.1.5 115295 2z69A 154 33.39 3dkhA 559 33.39 1bec 238 33.94 2p5bA 352 35.87 1vp6A 138 36.96 b.82.3.2 113939 3mdxA 178 37.57 1euwA 152 37.66 b.85.4.1 28349 1dgwY 93 37.79 1tdtA 259 37.93 b.81.1.2 28055 1thjA 214 37.99 b.81.1.5 28072 3dv8A 220 38.01 2we1A 286 38.43 1vyqA 173 39.19 b.85.4.1 120548 1i6xA 209 40.00 a.4.5.4,b.82.3.2 83673,83674 3emrA 310 40.08 3bcxA 437 41.41 3l6pA 236 43.57 1aipA 405 43.75 b.43.3.1,b.44.1.1,c.37.1.8 25697,25737,32132 2ox0A 381 44.73 3cf6E 694 45.54 2yzjA 169 46.08 1mdoA 393 46.69 c.67.1.4 79013 1zybA 232 47.71 a.4.5.4,b.82.3.2 125815,125816 3m6sA 331 48.35 3e97A 231 48.58 3i1cA 324 48.69 3icfA 335 49.85 1plc 99 50.42 2dv6A 447 51.93 1jsdA 319 52.12 b.19.1.2 63258 3ecyA 160 52.85 3km5A 180 52.87 3b8xA 390 53.48 2fp7B 172 53.64 b.47.1.3 133899 3gydA 187 55.40 1f7dA 136 55.50 b.85.4.1 28353 3ei3A 1158 56.17 2ppeA 343 57.10 b.6.1.3,b.6.1.3 149769,149770 3tdt 274 58.64 2aq9A 262 59.32 b.81.1.1 127167 2v4nA 254 59.49 2p9oA 169 60.17 2bgcA 238 60.33 a.4.5.4,b.82.3.3 128458,128459 2bazA 142 61.28 3tdtA 274 62.15 b.81.1.2 28053 1qreA 247 62.72 b.81.1.5 28066 3g4eA 297 63.76 2qt5A 200 64.44 1cx4A 305 65.18 b.82.3.2,b.82.3.2 59099,59100 1d2eA 397 66.57 b.43.3.1,b.44.1.1,c.37.1.8 25701,25741,32136 1nszA 347 66.88 b.30.5.4 80724 2ol1A 147 66.91 3ixcA 191 67.73 1lci 550 67.97 3eg4A 304 68.81 3ce1A 168 69.02 3dxtA 354 69.31 2r9qA 370 70.63 2ismA 352 70.93 1kv7A 488 71.01 b.6.1.3,b.6.1.3,b.6.1.3 68873,68874,68875 2ih8A 559 71.28 b.6.1.3,b.6.1.3,b.6.1.3 137407,137408,137409 3dr2A 305 71.93 3bqwA 351 74.54 1s4iA 175 75.46 1yqcA 170 76.74 b.82.1.14 123877 1ijqA 316 78.47 b.68.5.1,g.3.11.1 62506,62507 3h6xA 148 79.68 2opwA 291 79.88 3kt7A 633 82.07 3lqwA 163 82.55 1becA 238 84.02 b.1.1.1,b.1.1.2 20627,21561 1plcA 99 84.23 b.6.1.1 22846 3h7kA 383 84.29 2ftbA 125 85.10 b.60.1.2 134057 2ajuH 219 85.82 2wzqA 619 86.05 3h3zA 235 89.01 1rwiA 270 89.12 b.68.9.1 97987 2ahdA 165 89.97 d.159.1.7 126752