# List of top-scoring protein chains for t04-w0.5-1-o_notor2-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://compbio.soe.ucsc.edu/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2qdrA 303 5.99e-17 1tq5A 242 7.10e-14 b.82.1.12 119311 2vecA 256 1.40e-13 2p17A 277 3.02e-13 1j1lA 290 4.00e-13 b.82.1.12 90766 1rc6A 261 6.66e-13 b.82.1.11 97287 1sefA 274 8.88e-13 b.82.1.11 105452 3cjxA 165 3.30e-12 2phdA 368 8.06e-12 b.82.1.23 149468 2o1qA 145 1.27e-11 b.82.1.21 148547 2d40A 354 4.14e-11 b.82.1.23 146454 3ebrA 159 4.67e-11 1juhA 350 7.04e-11 b.82.1.5 71884 1y3tA 337 2.28e-10 b.82.1.5 122600 2h0vA 338 3.08e-10 1sfnA 246 3.16e-10 b.82.1.11 105496 2q1zB 195 3.82e-10 2pfwA 116 4.05e-10 3kgzA 156 8.41e-10 3ibmA 167 1.16e-09 1vj2A 126 1.18e-09 b.82.1.10 100796 1j58A 385 1.21e-09 b.82.1.2 71531 2oa2A 148 1.32e-09 2vqaA 361 1.40e-09 3i7dA 163 1.70e-09 1o4tA 133 1.82e-09 b.82.1.9 86622 3cewA 125 2.84e-09 3ht1A 145 2.88e-09 3h8uA 125 3.62e-09 2ozjA 114 4.65e-09 1v70A 105 4.77e-09 b.82.1.9 113555 2q30A 110 7.78e-09 1yhfA 115 8.56e-09 b.82.1.9 123176 1lr5A 163 1.10e-08 b.82.1.2 74215 2o8qA 134 1.20e-08 2e9qA 459 1.61e-08 3c3vA 510 1.68e-08 3h7jA 243 1.76e-08 2et1A 201 1.78e-08 b.82.1.2 132351 2d5fA 493 2.35e-08 2b8mA 117 2.47e-08 b.82.1.18 128092 3es1A 172 2.55e-08 2gu9A 113 2.91e-08 3l2hA 162 3.02e-08 2gc1A 188 3.61e-08 b.82.1.7 134928 2qnkA 286 3.95e-08 2ea7A 434 8.62e-08 3fz3A 531 1.07e-07 1od5A 492 1.21e-07 b.82.1.2,b.82.1.2 86832,86833 1fi2A 201 1.77e-07 b.82.1.2 59845 3lwcA 119 1.79e-07 1y9qA 192 2.81e-07 a.35.1.8,b.82.1.15 116592,116593 3fjsA 114 5.25e-07 3d82A 102 5.89e-07 2pytA 133 6.00e-07 b.82.1.24 149957 1x82A 190 1.32e-06 b.82.1.7 114955 2oziA 98 1.51e-06 3eqeA 171 1.79e-06 3lagA 98 2.49e-06 2fqpA 97 3.48e-06 2atfA 200 3.50e-06 b.82.1.19 127290 2phlA 397 3.88e-06 b.82.1.2,b.82.1.2 28082,28083 3elnA 200 3.94e-06 b.82.1.19 158185 1cauB 184 5.33e-06 b.82.1.2 28103 1dgwA 178 7.02e-06 b.82.1.2 28090 2b5hA 200 9.86e-06 b.82.1.19 127894 2f4pA 147 1.45e-05 b.82.1.9 132933 3g7dA 443 2.16e-05 3bcwA 123 2.21e-05 1xjaA 178 3.37e-05 b.82.4.1 115382 2bnmA 198 5.65e-05 a.35.1.3,b.82.1.10 128835,128836 2gm6A 208 0.000122 b.82.1.19 147130 1qxrA 189 0.000209 b.82.1.7 96552 2i45A 107 0.000213 1zrrA 179 0.000391 b.82.1.6 125555 1vr3A 191 0.000482 b.82.1.6 120431 1yfuA 174 0.000902 b.82.1.20 123094 2pamA 141 0.001596 b.82.1.1 149348 2vpvA 166 0.002891 2opkA 112 0.003577 3d0jA 140 0.003846 3h1wA 393 0.003934 2pa7A 141 0.004131 b.82.1.1 149339 1zvfA 176 0.004926 b.82.1.20 146029 3gbgA 276 0.005214 1zx5A 300 0.007454 b.82.1.3 125763 2wfpA 394 0.01133 3ejkA 174 0.05423 2wwuA 371 0.06046 3d8cA 349 0.06917 3k3oA 371 0.07123 3esgA 193 0.09881 2yu1A 451 0.1184 3es4A 116 0.1310 1e5rA 290 0.2861 b.82.2.4 59276 1pmiA 440 0.5000 b.82.1.3 28114 1h2kA 349 0.5938 b.82.2.6 76572 1o5uA 101 0.6573 b.82.1.8 92518 1pmi 440 0.6897 1nxmA 197 0.8730 b.82.1.1 86385 2ptmA 198 1.117 1rl3A 288 1.221 b.82.3.2,b.82.3.2 104975,104976 2arcA 164 1.265 b.82.4.1 28148 2rg4A 216 1.444 2qvsB 310 1.633 3bpzA 202 1.767 1qwrA 319 1.955 b.82.1.3 96491 3fhiB 154 2.387 1vrbA 342 2.470 b.82.2.11 120450 3idbB 161 2.506 2d93A 134 3.204 1o7fA 469 3.378 a.4.5.31,b.82.3.2,b.82.3.2 81131,81132,81133 2fmyA 220 4.134 3eo6A 106 4.606 2ixkA 184 5.135 2c0zA 216 5.970 b.82.1.1 129615 2zwnA 339 6.088 2a1xA 308 7.570 b.82.2.9 126022 3hqxA 111 7.598 2oyzA 94 8.518 b.82.1.22 149082 3bb6A 127 8.780 b.82.2.13 155045 1ne6A 283 9.783 b.82.3.2,b.82.3.2 91831,91832 3k2oA 336 10.15 2zklA 369 10.41 1wgpA 137 10.71 b.82.3.2 114619 3dl3A 119 10.96 b.82.2.13 157762 3e17A 88 12.25 2zooA 442 13.78 2wqkA 251 14.09 2cclA 158 14.82 b.2.2.2 130248 2v4nA 254 15.27 3gdcA 288 15.50 1s4cA 155 15.84 b.82.2.7 118860 2p4oA 306 15.85 b.68.6.3 149216 2qt5A 200 16.22 1aohA 147 17.55 b.2.2.2 22401 1oi6A 205 18.38 b.82.1.1 103940 1upiA 225 18.60 b.82.1.1 99757 2phjA 251 18.90 2ih8A 559 19.70 b.6.1.3,b.6.1.3,b.6.1.3 137407,137408,137409 1omiA 248 20.10 b.82.3.3,a.4.5.4 87079,87080 3dkhA 559 20.26 2pqqA 149 20.44 2we3A 264 22.02 3b8xA 390 22.66 1xl4A 301 22.82 b.1.18.16,f.14.1.1 115430,115431 1npeA 267 23.05 b.68.5.1 92032 1v0eA 666 23.60 b.68.1.2,b.108.1.3 113466,113467 1kbvA 327 23.98 b.6.1.3,b.6.1.3 68395,68396 1ywkA 289 25.53 b.82.1.13 124155 2bw4A 340 28.43 b.6.1.3,b.6.1.3 129320,129321 1dgwX 79 28.83 b.82.1.2 28091 2b9uA 176 29.27 1eybA 471 30.38 b.82.1.4 28115 2h6bA 250 30.65 a.4.5.4,b.82.3.2 147228,147229 1vp6A 138 30.85 b.82.3.2 113939 2qjvA 270 31.04 1hw5A 210 31.39 a.4.5.4,b.82.3.2 16098,28137 1rydA 387 31.91 c.2.1.3,d.81.1.5 118801,118802 3dn7A 194 32.32 1ep0A 185 32.50 b.82.1.1 28080 3km5A 180 32.77 2o62A 270 33.56 b.60.1.9,b.60.1.9 148622,148623 2z69A 154 33.83 2ajuH 219 35.23 2bgcA 238 35.73 a.4.5.4,b.82.3.3 128458,128459 3g5wA 318 36.89 2wwjA 348 37.25 3emrA 310 40.72 1xruA 282 41.04 b.82.1.13 122262 1bec 238 41.13 2qmaA 497 42.46 2ppeA 343 42.95 b.6.1.3,b.6.1.3 149769,149770 2ouiA 360 43.74 1zdsA 336 46.59 b.6.1.3,b.6.1.3 124952,124953 1pv9A 348 46.73 c.55.2.1,d.127.1.1 95157,95158 2rftA 344 46.79 1q3eA 207 49.91 b.82.3.2 95669 3e97A 231 51.26 3cf6E 694 51.58 1cx4A 305 52.38 b.82.3.2,b.82.3.2 59099,59100 3gbnA 331 53.03 3dr7A 391 55.42 1mkaA 171 55.57 d.38.1.2 38543 3fdyA 623 55.63 2v5mA 388 57.40 2fvkA 559 57.92 b.92.1.3,c.1.9.6 134204,134205 1nnwA 252 61.75 d.159.1.5 80674 1rd8A 335 62.37 b.19.1.2 97308 1o6gA 710 62.87 b.69.7.1,c.69.1.4 81087,81088 1u3nA 162 63.43 3httA 324 65.00 1i6xA 209 65.41 a.4.5.4,b.82.3.2 83673,83674 2x1wL 213 66.00 3gydA 187 66.62 1kbpA 432 67.67 b.1.12.1,d.159.1.1 22349,42068 1zybA 232 68.26 a.4.5.4,b.82.3.2 125815,125816 1kv7A 488 68.68 b.6.1.3,b.6.1.3,b.6.1.3 68873,68874,68875 2hy1A 280 70.79 d.159.1.11 147437 3f5oA 148 70.85 1x9lA 149 71.92 b.2.10.1 109528 1k5jA 124 72.55 b.121.3.1 68201 3ce1A 168 74.51 1ruzH 328 74.72 b.19.1.2 97889 3gleA 295 75.40 3nul 130 77.38 2piaA 321 79.39 b.43.4.2,c.25.1.2,d.15.4.2 25663,31553,37704 4kbpA 432 79.58 b.1.12.1,d.159.1.1 22345,42064 3dv8A 220 80.14 1ym5A 300 80.93 2h6cA 232 86.06 a.4.5.4,b.82.3.2 147232,147233 3c5oA 157 87.79 2grgA 120 88.04 d.110.10.1 147159 1m1lA 236 89.35 d.260.1.1 91166