# List of top-scoring protein chains for t04-w0.5-1-o_notor-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://compbio.soe.ucsc.edu/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2qdrA 303 2.70e-17 1tq5A 242 3.86e-14 b.82.1.12 119311 2vecA 256 8.10e-14 2p17A 277 1.73e-13 1j1lA 290 2.50e-13 b.82.1.12 90766 1sefA 274 4.47e-13 b.82.1.11 105452 1rc6A 261 4.70e-13 b.82.1.11 97287 3cjxA 165 2.23e-12 2phdA 368 3.29e-12 b.82.1.23 149468 2o1qA 145 8.87e-12 b.82.1.21 148547 2d40A 354 2.40e-11 b.82.1.23 146454 3ebrA 159 2.48e-11 1juhA 350 3.39e-11 b.82.1.5 71884 1y3tA 337 9.66e-11 b.82.1.5 122600 2h0vA 338 1.46e-10 2pfwA 116 1.92e-10 1sfnA 246 1.93e-10 b.82.1.11 105496 2q1zB 195 2.19e-10 3kgzA 156 4.31e-10 1j58A 385 5.89e-10 b.82.1.2 71531 1vj2A 126 6.50e-10 b.82.1.10 100796 2vqaA 361 6.62e-10 2oa2A 148 7.52e-10 3ibmA 167 7.96e-10 3i7dA 163 8.78e-10 1o4tA 133 1.02e-09 b.82.1.9 86622 3ht1A 145 1.39e-09 3cewA 125 1.40e-09 3h8uA 125 1.84e-09 2ozjA 114 2.46e-09 1v70A 105 2.67e-09 b.82.1.9 113555 2q30A 110 3.90e-09 1yhfA 115 4.17e-09 b.82.1.9 123176 1lr5A 163 6.94e-09 b.82.1.2 74215 2o8qA 134 7.96e-09 3h7jA 243 8.77e-09 2e9qA 459 1.02e-08 2et1A 201 1.21e-08 b.82.1.2 132351 3c3vA 510 1.23e-08 2d5fA 493 1.33e-08 2b8mA 117 1.49e-08 b.82.1.18 128092 3l2hA 162 1.57e-08 3es1A 172 1.58e-08 2gu9A 113 1.77e-08 2gc1A 188 1.87e-08 b.82.1.7 134928 2qnkA 286 2.99e-08 2ea7A 434 6.52e-08 1od5A 492 6.73e-08 b.82.1.2,b.82.1.2 86832,86833 3fz3A 531 8.58e-08 1fi2A 201 1.15e-07 b.82.1.2 59845 3lwcA 119 1.22e-07 1y9qA 192 1.61e-07 a.35.1.8,b.82.1.15 116592,116593 3fjsA 114 2.90e-07 3d82A 102 3.26e-07 2pytA 133 3.53e-07 b.82.1.24 149957 1x82A 190 6.86e-07 b.82.1.7 114955 2oziA 98 7.84e-07 3eqeA 171 1.09e-06 3lagA 98 1.31e-06 2fqpA 97 2.10e-06 2atfA 200 2.17e-06 b.82.1.19 127290 3elnA 200 2.31e-06 b.82.1.19 158185 2phlA 397 2.71e-06 b.82.1.2,b.82.1.2 28082,28083 1cauB 184 4.14e-06 b.82.1.2 28103 1dgwA 178 5.42e-06 b.82.1.2 28090 2b5hA 200 7.30e-06 b.82.1.19 127894 2f4pA 147 8.31e-06 b.82.1.9 132933 3bcwA 123 1.24e-05 3g7dA 443 1.32e-05 1xjaA 178 2.65e-05 b.82.4.1 115382 2bnmA 198 4.52e-05 a.35.1.3,b.82.1.10 128835,128836 2gm6A 208 7.23e-05 b.82.1.19 147130 1qxrA 189 0.000111 b.82.1.7 96552 2i45A 107 0.000125 1zrrA 179 0.000291 b.82.1.6 125555 1vr3A 191 0.000386 b.82.1.6 120431 1yfuA 174 0.000476 b.82.1.20 123094 2pamA 141 0.001709 b.82.1.1 149348 2vpvA 166 0.002005 2opkA 112 0.002111 3d0jA 140 0.002753 1zvfA 176 0.003541 b.82.1.20 146029 3h1wA 393 0.003817 2pa7A 141 0.003898 b.82.1.1 149339 3gbgA 276 0.004135 1zx5A 300 0.006536 b.82.1.3 125763 2wfpA 394 0.01088 3ejkA 174 0.04908 3d8cA 349 0.05572 2wwuA 371 0.06174 3k3oA 371 0.07701 3esgA 193 0.07838 3es4A 116 0.09378 2yu1A 451 0.1352 1e5rA 290 0.3207 b.82.2.4 59276 1pmiA 440 0.3316 b.82.1.3 28114 1o5uA 101 0.4573 b.82.1.8 92518 1pmi 440 0.5547 1h2kA 349 0.5574 b.82.2.6 76572 1nxmA 197 0.7542 b.82.1.1 86385 2ptmA 198 0.9032 1rl3A 288 0.9078 b.82.3.2,b.82.3.2 104975,104976 2arcA 164 0.9781 b.82.4.1 28148 2qvsB 310 1.133 3bpzA 202 1.269 2rg4A 216 1.475 1vrbA 342 1.631 b.82.2.11 120450 3fhiB 154 1.702 1qwrA 319 1.811 b.82.1.3 96491 3idbB 161 2.109 2d93A 134 2.386 3eo6A 106 2.649 1o7fA 469 2.947 a.4.5.31,b.82.3.2,b.82.3.2 81131,81132,81133 2fmyA 220 3.148 2ixkA 184 4.200 3hqxA 111 4.463 2c0zA 216 5.007 b.82.1.1 129615 2oyzA 94 5.449 b.82.1.22 149082 2zwnA 339 6.197 2a1xA 308 6.544 b.82.2.9 126022 3k2oA 336 6.606 3bb6A 127 6.635 b.82.2.13 155045 2zklA 369 7.447 3dl3A 119 8.218 b.82.2.13 157762 1ne6A 283 8.427 b.82.3.2,b.82.3.2 91831,91832 3e17A 88 9.479 1wgpA 137 9.494 b.82.3.2 114619 2cclA 158 10.19 b.2.2.2 130248 2wqkA 251 11.50 1aohA 147 13.12 b.2.2.2 22401 2p4oA 306 13.87 b.68.6.3 149216 2v4nA 254 14.24 2pqqA 149 14.53 1s4cA 155 14.62 b.82.2.7 118860 1kbvA 327 15.51 b.6.1.3,b.6.1.3 68395,68396 2zooA 442 16.29 2we3A 264 16.59 1xl4A 301 16.77 b.1.18.16,f.14.1.1 115430,115431 1oi6A 205 17.66 b.82.1.1 103940 1ywkA 289 17.79 b.82.1.13 124155 3gdcA 288 17.89 1upiA 225 18.30 b.82.1.1 99757 2ih8A 559 18.51 b.6.1.3,b.6.1.3,b.6.1.3 137407,137408,137409 2qt5A 200 19.24 2phjA 251 19.47 3dkhA 559 19.73 1omiA 248 19.76 b.82.3.3,a.4.5.4 87079,87080 1v0eA 666 20.95 b.68.1.2,b.108.1.3 113466,113467 2qjvA 270 21.33 3b8xA 390 21.81 2ajuH 219 22.27 1eybA 471 23.95 b.82.1.4 28115 2b9uA 176 24.66 1hw5A 210 24.85 a.4.5.4,b.82.3.2 16098,28137 1vp6A 138 24.91 b.82.3.2 113939 1npeA 267 25.09 b.68.5.1 92032 2h6bA 250 25.85 a.4.5.4,b.82.3.2 147228,147229 2z69A 154 26.21 1dgwX 79 27.23 b.82.1.2 28091 3g5wA 318 27.68 2o62A 270 28.54 b.60.1.9,b.60.1.9 148622,148623 3km5A 180 28.64 1rydA 387 29.98 c.2.1.3,d.81.1.5 118801,118802 2fvkA 559 31.32 b.92.1.3,c.1.9.6 134204,134205 2ppeA 343 31.94 b.6.1.3,b.6.1.3 149769,149770 3cf6E 694 32.29 3dn7A 194 32.54 1q3eA 207 32.80 b.82.3.2 95669 2wwjA 348 33.79 1ep0A 185 34.66 b.82.1.1 28080 2bgcA 238 34.97 a.4.5.4,b.82.3.3 128458,128459 2bw4A 340 38.97 b.6.1.3,b.6.1.3 129320,129321 2v5mA 388 39.17 1bec 238 41.48 2ouiA 360 41.63 3emrA 310 41.85 1cx4A 305 42.36 b.82.3.2,b.82.3.2 59099,59100 1rd8A 335 43.31 b.19.1.2 97308 2rftA 344 43.35 3gbnA 331 43.50 1zdsA 336 43.98 b.6.1.3,b.6.1.3 124952,124953 3gydA 187 44.22 2x1wL 213 44.77 1xruA 282 45.25 b.82.1.13 122262 3fdyA 623 47.70 3e97A 231 47.93 1i6xA 209 49.10 a.4.5.4,b.82.3.2 83673,83674 1nnwA 252 53.80 d.159.1.5 80674 1u3nA 162 54.03 1x9lA 149 54.08 b.2.10.1 109528 3httA 324 56.11 1o6gA 710 59.52 b.69.7.1,c.69.1.4 81087,81088 2qmaA 497 60.14 3f5oA 148 60.43 3ce1A 168 60.69 2ojhA 297 66.48 1pv9A 348 68.25 c.55.2.1,d.127.1.1 95157,95158 1zybA 232 70.04 a.4.5.4,b.82.3.2 125815,125816 1kcvH 217 73.33 b.1.1.1,b.1.1.2 72315,72316 2aqpA 164 74.42 3dv8A 220 75.26 1euwA 152 77.67 b.85.4.1 28349 2h6cA 232 78.38 a.4.5.4,b.82.3.2 147232,147233 1nszA 347 78.52 b.30.5.4 80724 1rcy 151 79.32 1h4rA 314 79.93 a.11.2.1,b.55.1.5,d.15.1.4 65616,65617,65618 1ruzH 328 79.97 b.19.1.2 97889 1k5jA 124 80.15 b.121.3.1 68201 1m1lA 236 81.80 d.260.1.1 91166 1mkaA 171 81.95 d.38.1.2 38543 2r9qA 370 82.65 1kbpA 432 83.65 b.1.12.1,d.159.1.1 22349,42068 1kv7A 488 83.71 b.6.1.3,b.6.1.3,b.6.1.3 68873,68874,68875 3h63A 315 85.76 3fm2A 135 86.56 1xnzA 264 88.04 d.127.1.1 115673 3immA 201 89.77