# List of top-scoring protein chains for t04-w0.5-1-near-backbone-11-0.3-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://compbio.soe.ucsc.edu/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2qdrA 303 2.40e-20 1tq5A 242 5.27e-17 b.82.1.12 119311 2vecA 256 4.70e-16 1sefA 274 8.60e-16 b.82.1.11 105452 1rc6A 261 1.22e-15 b.82.1.11 97287 2p17A 277 2.61e-15 1j1lA 290 3.77e-15 b.82.1.12 90766 3cjxA 165 1.08e-14 2o1qA 145 7.20e-14 b.82.1.21 148547 3ebrA 159 7.91e-14 2phdA 368 2.17e-13 b.82.1.23 149468 1juhA 350 5.82e-13 b.82.1.5 71884 1sfnA 246 7.93e-13 b.82.1.11 105496 1y3tA 337 8.87e-13 b.82.1.5 122600 2h0vA 338 1.32e-12 2q1zB 195 1.37e-12 2d40A 354 3.33e-12 b.82.1.23 146454 3kgzA 156 3.99e-12 2pfwA 116 1.10e-11 1vj2A 126 1.46e-11 b.82.1.10 100796 1j58A 385 1.52e-11 b.82.1.2 71531 1o4tA 133 1.92e-11 b.82.1.9 86622 2oa2A 148 2.10e-11 3ibmA 167 2.20e-11 2vqaA 361 3.40e-11 3h8uA 125 4.70e-11 2e9qA 459 5.25e-11 1v70A 105 7.17e-11 b.82.1.9 113555 2ozjA 114 8.11e-11 1lr5A 163 8.69e-11 b.82.1.2 74215 3i7dA 163 1.05e-10 3cewA 125 1.22e-10 3ht1A 145 1.52e-10 3h7jA 243 1.88e-10 2q30A 110 1.92e-10 2d5fA 493 2.07e-10 3c3vA 510 2.25e-10 1yhfA 115 2.42e-10 b.82.1.9 123176 2qnkA 286 3.13e-10 2et1A 201 4.05e-10 b.82.1.2 132351 2o8qA 134 6.45e-10 3l2hA 162 7.08e-10 2b8mA 117 7.27e-10 b.82.1.18 128092 2gu9A 113 7.52e-10 2gc1A 188 8.10e-10 b.82.1.7 134928 1od5A 492 9.54e-10 b.82.1.2,b.82.1.2 86832,86833 3es1A 172 1.16e-09 3fz3A 531 1.61e-09 2ea7A 434 2.62e-09 1fi2A 201 5.19e-09 b.82.1.2 59845 2pytA 133 6.05e-09 b.82.1.24 149957 3lwcA 119 1.11e-08 1y9qA 192 1.21e-08 a.35.1.8,b.82.1.15 116592,116593 1x82A 190 2.80e-08 b.82.1.7 114955 3fjsA 114 3.02e-08 3eqeA 171 3.78e-08 3d82A 102 4.60e-08 2atfA 200 5.62e-08 b.82.1.19 127290 2oziA 98 7.12e-08 2phlA 397 1.09e-07 b.82.1.2,b.82.1.2 28082,28083 3lagA 98 1.18e-07 3elnA 200 1.39e-07 b.82.1.19 158185 2b5hA 200 1.88e-07 b.82.1.19 127894 2fqpA 97 2.79e-07 1dgwA 178 3.08e-07 b.82.1.2 28090 1cauB 184 4.28e-07 b.82.1.2 28103 2f4pA 147 6.48e-07 b.82.1.9 132933 2gm6A 208 2.57e-06 b.82.1.19 147130 3g7dA 443 2.96e-06 3bcwA 123 3.06e-06 1xjaA 178 4.25e-06 b.82.4.1 115382 1qxrA 189 6.07e-06 b.82.1.7 96552 2bnmA 198 7.20e-06 a.35.1.3,b.82.1.10 128835,128836 2i45A 107 9.44e-06 1vr3A 191 1.55e-05 b.82.1.6 120431 1yfuA 174 4.10e-05 b.82.1.20 123094 1zrrA 179 7.70e-05 b.82.1.6 125555 2pamA 141 0.000294 b.82.1.1 149348 3d0jA 140 0.000453 1zvfA 176 0.000504 b.82.1.20 146029 2vpvA 166 0.000581 2opkA 112 0.000604 2pa7A 141 0.000606 b.82.1.1 149339 3gbgA 276 0.001182 1zx5A 300 0.007822 b.82.1.3 125763 3k3oA 371 0.008057 3ejkA 174 0.01327 3d8cA 349 0.01358 2wwuA 371 0.01506 3h1wA 393 0.01717 3esgA 193 0.02537 2wfpA 394 0.03223 2qvsB 310 0.03236 2yu1A 451 0.04026 3es4A 116 0.07758 1rl3A 288 0.1130 b.82.3.2,b.82.3.2 104975,104976 1e5rA 290 0.1293 b.82.2.4 59276 2ptmA 198 0.1371 1h2kA 349 0.1537 b.82.2.6 76572 1o5uA 101 0.1822 b.82.1.8 92518 1vrbA 342 0.1944 b.82.2.11 120450 1pmi 440 0.2165 3bpzA 202 0.2444 3idbB 161 0.3586 3fhiB 154 0.3732 2arcA 164 0.4676 b.82.4.1 28148 1pmiA 440 0.6205 b.82.1.3 28114 2d93A 134 0.6217 2rg4A 216 0.6396 1wgpA 137 0.6541 b.82.3.2 114619 2fmyA 220 0.6749 3hqxA 111 0.9695 1qwrA 319 1.090 b.82.1.3 96491 1ne6A 283 1.131 b.82.3.2,b.82.3.2 91831,91832 1ywkA 289 1.443 b.82.1.13 124155 3eo6A 106 1.544 1omiA 248 1.566 b.82.3.3,a.4.5.4 87079,87080 3bb6A 127 1.673 b.82.2.13 155045 1nxmA 197 1.800 b.82.1.1 86385 3k2oA 336 1.870 3gydA 187 1.879 2ixkA 184 1.958 2z69A 154 2.014 3dl3A 119 2.062 b.82.2.13 157762 3dkqA 243 2.763 2zklA 369 2.818 1xruA 282 2.871 b.82.1.13 122262 2c0zA 216 3.287 b.82.1.1 129615 2h6bA 250 3.432 a.4.5.4,b.82.3.2 147228,147229 2a1xA 308 3.926 b.82.2.9 126022 1vp6A 138 4.204 b.82.3.2 113939 2oyzA 94 5.142 b.82.1.22 149082 2bgcA 238 5.648 a.4.5.4,b.82.3.3 128458,128459 2pqqA 149 5.784 2rftA 344 6.485 3e97A 231 7.011 1oi6A 205 7.080 b.82.1.1 103940 3cf6E 694 7.242 1o7fA 469 7.643 a.4.5.31,b.82.3.2,b.82.3.2 81131,81132,81133 1rd8A 335 8.781 b.19.1.2 97308 1czpA 98 9.000 d.15.4.1 37645 1eybA 471 9.062 b.82.1.4 28115 1dq3A 454 10.25 b.86.1.2,d.50.3.1,d.95.2.2,d.95.2.2 28380,38798,40585,40586 2wqkA 251 10.40 3i4oA 79 10.51 3dn7A 194 10.66 1zybA 232 10.80 a.4.5.4,b.82.3.2 125815,125816 1cx4A 305 10.96 b.82.3.2,b.82.3.2 59099,59100 1upiA 225 11.72 b.82.1.1 99757 1s4cA 155 11.91 b.82.2.7 118860 2v4nA 254 12.60 1wbhA 214 13.08 c.1.10.1 120845 1o5lA 213 14.01 b.82.3.2 92506 3gbnA 331 14.11 1ruzH 328 14.40 b.19.1.2 97889 1kbvA 327 14.56 b.6.1.3,b.6.1.3 68395,68396 1q3eA 207 15.72 b.82.3.2 95669 3h3zA 235 16.70 1ru7A 327 17.49 b.19.1.2 97837 1rvxA 327 17.69 b.19.1.2 97937 1ep0A 185 17.76 b.82.1.1 28080 1s4iA 175 17.79 2we3A 264 18.17 1frdA 98 19.28 d.15.4.1 37648 1hw5A 210 20.49 a.4.5.4,b.82.3.2 16098,28137 1awdA 94 21.50 d.15.4.1 37673 1a70A 97 21.64 d.15.4.1 37678 3gf8A 296 22.77 1offA 97 23.78 d.15.4.1 86947 3fx3A 237 24.16 1frrA 95 24.18 d.15.4.1 37674 3gdcA 288 24.95 1iueA 98 25.22 d.15.4.1 90697 2b9uA 176 26.12 3httA 324 26.13 3mdpA 142 26.26 1h4rA 314 27.99 a.11.2.1,b.55.1.5,d.15.1.4 65616,65617,65618 2qjvA 270 29.54 1v10A 521 29.89 b.6.1.3,b.6.1.3,b.6.1.3 108224,108225,108226 2gauA 232 30.00 a.4.5.4,b.82.3.2 134894,134895 3emrA 310 30.84 1dgwX 79 31.60 b.82.1.2 28091 1aipA 405 32.15 b.43.3.1,b.44.1.1,c.37.1.8 25697,25737,32132 1i7pA 274 32.16 b.43.4.2,c.25.1.1 66048,66049 2phjA 251 34.70 1doiA 128 34.94 d.15.4.1 37676 1xtmA 175 35.31 3fdyA 623 36.05 2qmaA 497 38.95 1aohA 147 40.63 b.2.2.2 22401 2bw4A 340 41.72 b.6.1.3,b.6.1.3 129320,129321 1ruyH 328 42.52 b.19.1.2 97883 2am1A 454 43.45 1ru4A 400 43.57 b.80.1.9 97836 1npeA 267 43.68 b.68.5.1 92032 3bqwA 351 44.97 1rfkA 98 45.91 1am2A 199 46.38 b.86.1.2 28381 1i6xA 209 46.78 a.4.5.4,b.82.3.2 83673,83674 2himA 358 47.05 1xl4A 301 47.70 b.1.18.16,f.14.1.1 115430,115431 3gbmA 334 48.99 1fviA 297 51.03 b.40.4.6,d.142.2.1 25364,41578 1rv0H 328 52.74 b.19.1.2 97895 2ih8A 559 55.00 b.6.1.3,b.6.1.3,b.6.1.3 137407,137408,137409 1e10A 128 57.14 d.15.4.1 59154 2zooA 442 58.45 1rydA 387 58.55 c.2.1.3,d.81.1.5 118801,118802 1rvtH 328 58.70 b.19.1.2 97931 3hdoA 360 59.42 2ibxA 340 59.49 b.19.1.2 137209 1od6A 160 60.23 c.26.1.3 86836 2wwjA 348 61.61 3dv8A 220 62.19 2h6cA 232 62.77 a.4.5.4,b.82.3.2 147232,147233 3fkuA 338 62.89 2bceA 585 63.09 c.69.1.1 34625 1jsdA 319 64.90 b.19.1.2 63258 2we0A 286 65.19 3ll7A 410 65.55 1jsmA 325 67.41 b.19.1.2 63264 1jmcA 246 69.61 b.40.4.3,b.40.4.3 25300,25301 3dkhA 559 70.09 2prxA 160 71.37 2r9qA 370 71.53 2ns9A 157 73.12 d.129.3.10 148382 1b6aA 478 73.13 a.4.5.25,d.127.1.1 16223,41160 2qv7A 337 73.22 e.52.1.2 151386 3g7gA 158 73.78 1xtlA 175 74.37 1bxaA 105 75.16 b.6.1.1 22839 3e17A 88 75.93 2ojhA 297 76.05 1z6bA 154 76.95 d.38.1.6 124510 1q23A 219 76.97 c.43.1.1 104481 1o6gA 710 77.25 b.69.7.1,c.69.1.4 81087,81088 2yuhA 179 78.08 2wfwA 153 78.32 1vyqA 173 79.41 b.85.4.1 120548 3e6cC 250 81.77 a.4.5.4,b.82.3.2 158038,158039 1wlsA 328 81.91 3k4jA 623 82.35 2cohA 202 83.85 a.4.5.4,b.82.3.2 130677,130678 3divA 499 84.01 2grgA 120 85.92 d.110.10.1 147159 2bce 581 86.15 1rcy 151 86.85 2cclA 158 87.16 b.2.2.2 130248 2c0rA 362 89.28 c.67.1.4 129604