# List of top-scoring protein chains for t04-w0.5-1-n_sep-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://compbio.soe.ucsc.edu/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2qdrA 303 3.23e-17 1tq5A 242 9.33e-14 b.82.1.12 119311 2vecA 256 2.40e-13 2p17A 277 3.13e-13 1j1lA 290 8.72e-13 b.82.1.12 90766 1rc6A 261 1.04e-12 b.82.1.11 97287 1sefA 274 1.42e-12 b.82.1.11 105452 3cjxA 165 2.96e-12 2o1qA 145 8.23e-12 b.82.1.21 148547 2phdA 368 1.53e-11 b.82.1.23 149468 3ebrA 159 2.64e-11 1juhA 350 7.45e-11 b.82.1.5 71884 2d40A 354 7.64e-11 b.82.1.23 146454 1y3tA 337 9.01e-11 b.82.1.5 122600 2h0vA 338 1.83e-10 2pfwA 116 2.99e-10 1sfnA 246 3.31e-10 b.82.1.11 105496 2q1zB 195 4.86e-10 3kgzA 156 6.26e-10 2vqaA 361 1.06e-09 1vj2A 126 1.30e-09 b.82.1.10 100796 3ibmA 167 1.45e-09 3i7dA 163 1.50e-09 1j58A 385 1.68e-09 b.82.1.2 71531 1o4tA 133 1.90e-09 b.82.1.9 86622 3cewA 125 2.13e-09 2oa2A 148 2.65e-09 3ht1A 145 2.88e-09 1v70A 105 3.80e-09 b.82.1.9 113555 2ozjA 114 3.81e-09 3h8uA 125 4.35e-09 2q30A 110 7.14e-09 1yhfA 115 7.49e-09 b.82.1.9 123176 1lr5A 163 1.10e-08 b.82.1.2 74215 2et1A 201 1.52e-08 b.82.1.2 132351 2o8qA 134 1.62e-08 2e9qA 459 1.88e-08 3es1A 172 2.39e-08 3h7jA 243 2.47e-08 2gu9A 113 2.99e-08 2qnkA 286 3.11e-08 3c3vA 510 3.18e-08 2gc1A 188 3.28e-08 b.82.1.7 134928 2b8mA 117 3.86e-08 b.82.1.18 128092 3l2hA 162 3.91e-08 2d5fA 493 5.79e-08 2ea7A 434 5.87e-08 3lwcA 119 1.49e-07 1fi2A 201 1.65e-07 b.82.1.2 59845 1y9qA 192 2.00e-07 a.35.1.8,b.82.1.15 116592,116593 3fz3A 531 2.09e-07 1od5A 492 2.22e-07 b.82.1.2,b.82.1.2 86832,86833 3d82A 102 5.09e-07 2pytA 133 5.22e-07 b.82.1.24 149957 3fjsA 114 6.16e-07 2oziA 98 9.72e-07 1x82A 190 1.20e-06 b.82.1.7 114955 3eqeA 171 1.64e-06 3lagA 98 1.90e-06 2fqpA 97 2.35e-06 2atfA 200 2.75e-06 b.82.1.19 127290 3elnA 200 3.65e-06 b.82.1.19 158185 2phlA 397 4.49e-06 b.82.1.2,b.82.1.2 28082,28083 1cauB 184 7.68e-06 b.82.1.2 28103 2b5hA 200 9.06e-06 b.82.1.19 127894 1dgwA 178 1.11e-05 b.82.1.2 28090 2f4pA 147 1.29e-05 b.82.1.9 132933 3bcwA 123 1.73e-05 3g7dA 443 2.81e-05 1xjaA 178 3.84e-05 b.82.4.1 115382 2bnmA 198 4.57e-05 a.35.1.3,b.82.1.10 128835,128836 2gm6A 208 0.000106 b.82.1.19 147130 2i45A 107 0.000137 1qxrA 189 0.000143 b.82.1.7 96552 1yfuA 174 0.000415 b.82.1.20 123094 1vr3A 191 0.000417 b.82.1.6 120431 1zrrA 179 0.000520 b.82.1.6 125555 2pamA 141 0.001399 b.82.1.1 149348 3d0jA 140 0.001540 2vpvA 166 0.002698 2opkA 112 0.003191 1zvfA 176 0.003296 b.82.1.20 146029 2pa7A 141 0.003604 b.82.1.1 149339 3gbgA 276 0.005259 3h1wA 393 0.007049 1zx5A 300 0.009755 b.82.1.3 125763 2wfpA 394 0.01043 3ejkA 174 0.03617 3k3oA 371 0.05017 3esgA 193 0.05339 2wwuA 371 0.05498 3d8cA 349 0.07035 2yu1A 451 0.09097 3es4A 116 0.1142 1e5rA 290 0.2262 b.82.2.4 59276 1h2kA 349 0.3423 b.82.2.6 76572 1pmiA 440 0.3635 b.82.1.3 28114 1o5uA 101 0.5467 b.82.1.8 92518 3bpzA 202 0.6625 1rl3A 288 0.7063 b.82.3.2,b.82.3.2 104975,104976 2ptmA 198 0.7440 2arcA 164 0.8969 b.82.4.1 28148 2rg4A 216 0.9363 1pmi 440 1.072 1qwrA 319 1.140 b.82.1.3 96491 1nxmA 197 1.313 b.82.1.1 86385 2qvsB 310 1.528 1vrbA 342 1.797 b.82.2.11 120450 3fhiB 154 1.873 3idbB 161 1.970 2d93A 134 3.204 2fmyA 220 3.263 3k2oA 336 3.488 3eo6A 106 4.299 1npeA 267 4.522 b.68.5.1 92032 1o7fA 469 4.578 a.4.5.31,b.82.3.2,b.82.3.2 81131,81132,81133 2c0zA 216 5.315 b.82.1.1 129615 2ixkA 184 5.385 3dl3A 119 5.746 b.82.2.13 157762 2p4oA 306 5.955 b.68.6.3 149216 2oyzA 94 6.029 b.82.1.22 149082 1ne6A 283 6.109 b.82.3.2,b.82.3.2 91831,91832 3hqxA 111 6.885 1aohA 147 7.370 b.2.2.2 22401 1wgpA 137 7.916 b.82.3.2 114619 2qjvA 270 8.281 1eybA 471 8.373 b.82.1.4 28115 2zwnA 339 8.773 3bb6A 127 8.838 b.82.2.13 155045 1v0eA 666 9.497 b.68.1.2,b.108.1.3 113466,113467 2a1xA 308 9.776 b.82.2.9 126022 2pqqA 149 10.07 2cclA 158 10.21 b.2.2.2 130248 2zklA 369 10.74 2qt5A 200 12.18 1nnwA 252 12.72 d.159.1.5 80674 1q3eA 207 13.32 b.82.3.2 95669 1kbvA 327 13.59 b.6.1.3,b.6.1.3 68395,68396 2zooA 442 16.35 2o62A 270 16.37 b.60.1.9,b.60.1.9 148622,148623 1vp6A 138 16.46 b.82.3.2 113939 1o6gA 710 17.09 b.69.7.1,c.69.1.4 81087,81088 1omiA 248 17.14 b.82.3.3,a.4.5.4 87079,87080 1hw5A 210 18.72 a.4.5.4,b.82.3.2 16098,28137 3gdcA 288 18.82 1dgwX 79 19.31 b.82.1.2 28091 1oi6A 205 19.70 b.82.1.1 103940 2we3A 264 19.84 2z69A 154 19.88 1mdoA 393 19.90 c.67.1.4 79013 2h6bA 250 20.07 a.4.5.4,b.82.3.2 147228,147229 1xl4A 301 20.15 b.1.18.16,f.14.1.1 115430,115431 1s4cA 155 20.73 b.82.2.7 118860 3e17A 88 21.85 3dkhA 559 22.57 2bgcA 238 25.07 a.4.5.4,b.82.3.3 128458,128459 3b8xA 390 27.53 1zybA 232 29.69 a.4.5.4,b.82.3.2 125815,125816 3cf6E 694 30.40 3km5A 180 31.11 2hqsA 415 31.59 b.68.4.1,c.51.2.1 136662,136663 3dn7A 194 32.50 3gydA 187 34.60 1ep0A 185 35.03 b.82.1.1 28080 2ojhA 297 35.22 2wwjA 348 35.24 3h3zA 235 37.16 3fdyA 623 37.23 3g5wA 318 37.67 2v4nA 254 37.83 1a2zA 220 39.07 c.56.4.1 33794 3dv8A 220 40.28 1rcy 151 40.92 3h63A 315 41.83 1upiA 225 42.10 b.82.1.1 99757 1cx4A 305 42.40 b.82.3.2,b.82.3.2 59099,59100 2rftA 344 42.43 3fm2A 135 42.96 3e97A 231 43.27 1s4iA 175 43.46 3dr2A 305 43.98 2b9uA 176 47.54 3bcxA 437 48.54 1h4rA 314 48.84 a.11.2.1,b.55.1.5,d.15.1.4 65616,65617,65618 2ajuH 219 51.01 3ce1A 168 51.76 1ywkA 289 53.59 b.82.1.13 124155 3h7kA 383 53.73 3dr7A 391 53.83 3i1cA 324 53.93 1i6xA 209 54.13 a.4.5.4,b.82.3.2 83673,83674 1rd8A 335 55.85 b.19.1.2 97308 3bqwA 351 56.26 3fx3A 237 56.28 2h6cA 232 56.60 a.4.5.4,b.82.3.2 147232,147233 3gbnA 331 56.70 1kcvH 217 57.34 b.1.1.1,b.1.1.2 72315,72316 1mkaA 171 57.96 d.38.1.2 38543 3emrA 310 58.29 2gauA 232 58.77 a.4.5.4,b.82.3.2 134894,134895 1rydA 387 59.96 c.2.1.3,d.81.1.5 118801,118802 2ghsA 326 60.17 b.68.6.1 135209 1cruA 454 60.70 b.68.2.1 27617 2wqkA 251 60.73 1zdsA 336 64.85 b.6.1.3,b.6.1.3 124952,124953 2pooA 355 65.32 b.68.3.1 27626 3e6cC 250 65.38 a.4.5.4,b.82.3.2 158038,158039 3dkqA 243 66.16 1oh4A 179 66.98 b.18.1.18 92978 1ijqA 316 68.97 b.68.5.1,g.3.11.1 62506,62507 1bec 238 70.32 2bw4A 340 70.43 b.6.1.3,b.6.1.3 129320,129321 4kbpA 432 71.25 b.1.12.1,d.159.1.1 22345,42064 2fomB 185 71.85 b.47.1.3 133884 2aqpA 164 72.09 3cbtA 237 73.49 3dczA 207 73.50 1u3nA 162 73.76 1xhdA 173 75.63 b.81.1.5 115295 3d0sA 227 76.79 3g7gA 158 76.95 2ok8A 316 77.09 1bxaA 105 77.97 b.6.1.1 22839 3httA 324 80.95 2bjuA 453 82.19 b.50.1.2 128633 3mdpA 142 84.38 3icfA 335 84.42 1k5jA 124 85.38 b.121.3.1 68201 2io8A 619 86.37 c.30.1.7,d.3.1.15,d.142.1.8 137549,137550,137551 3gf8A 296 86.37 3nul 130 87.01 2fp7B 172 88.68 b.47.1.3 133899 3c5oA 157 88.82 2himA 358 88.89