# List of top-scoring protein chains for t04-w0.5-1-n_notor-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://compbio.soe.ucsc.edu/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2qdrA 303 2.08e-17 1tq5A 242 4.43e-14 b.82.1.12 119311 2vecA 256 9.78e-14 2p17A 277 2.08e-13 1j1lA 290 3.42e-13 b.82.1.12 90766 1rc6A 261 4.48e-13 b.82.1.11 97287 1sefA 274 6.60e-13 b.82.1.11 105452 3cjxA 165 1.28e-12 2o1qA 145 3.64e-12 b.82.1.21 148547 2phdA 368 5.81e-12 b.82.1.23 149468 3ebrA 159 1.06e-11 2d40A 354 3.72e-11 b.82.1.23 146454 1juhA 350 3.82e-11 b.82.1.5 71884 1y3tA 337 6.83e-11 b.82.1.5 122600 2h0vA 338 1.04e-10 1sfnA 246 1.62e-10 b.82.1.11 105496 2q1zB 195 1.82e-10 2pfwA 116 2.20e-10 3kgzA 156 3.74e-10 3i7dA 163 6.33e-10 1vj2A 126 6.84e-10 b.82.1.10 100796 2vqaA 361 7.88e-10 3ibmA 167 8.46e-10 1o4tA 133 1.03e-09 b.82.1.9 86622 1j58A 385 1.07e-09 b.82.1.2 71531 2oa2A 148 1.40e-09 3cewA 125 1.41e-09 3ht1A 145 1.55e-09 1v70A 105 2.68e-09 b.82.1.9 113555 2ozjA 114 2.77e-09 3h8uA 125 3.20e-09 2q30A 110 3.55e-09 1yhfA 115 4.06e-09 b.82.1.9 123176 1lr5A 163 5.78e-09 b.82.1.2 74215 2o8qA 134 7.78e-09 2et1A 201 1.03e-08 b.82.1.2 132351 3es1A 172 1.34e-08 3c3vA 510 1.38e-08 2e9qA 459 1.49e-08 2gc1A 188 1.55e-08 b.82.1.7 134928 2gu9A 113 1.56e-08 2b8mA 117 1.73e-08 b.82.1.18 128092 3h7jA 243 1.97e-08 2qnkA 286 1.98e-08 3l2hA 162 2.23e-08 2d5fA 493 3.06e-08 2ea7A 434 3.31e-08 3lwcA 119 8.80e-08 1od5A 492 1.05e-07 b.82.1.2,b.82.1.2 86832,86833 1fi2A 201 1.14e-07 b.82.1.2 59845 1y9qA 192 1.17e-07 a.35.1.8,b.82.1.15 116592,116593 3fz3A 531 1.18e-07 2pytA 133 2.22e-07 b.82.1.24 149957 3fjsA 114 2.81e-07 3d82A 102 3.94e-07 1x82A 190 7.43e-07 b.82.1.7 114955 2oziA 98 8.28e-07 3eqeA 171 1.09e-06 3lagA 98 1.56e-06 2fqpA 97 1.93e-06 2atfA 200 2.24e-06 b.82.1.19 127290 3elnA 200 2.67e-06 b.82.1.19 158185 2phlA 397 3.19e-06 b.82.1.2,b.82.1.2 28082,28083 1cauB 184 5.83e-06 b.82.1.2 28103 2b5hA 200 8.49e-06 b.82.1.19 127894 2f4pA 147 9.48e-06 b.82.1.9 132933 3bcwA 123 9.80e-06 1dgwA 178 1.01e-05 b.82.1.2 28090 3g7dA 443 1.49e-05 1xjaA 178 2.58e-05 b.82.4.1 115382 2bnmA 198 2.61e-05 a.35.1.3,b.82.1.10 128835,128836 2gm6A 208 8.20e-05 b.82.1.19 147130 2i45A 107 8.57e-05 1qxrA 189 0.000104 b.82.1.7 96552 1yfuA 174 0.000211 b.82.1.20 123094 1zrrA 179 0.000292 b.82.1.6 125555 1vr3A 191 0.000323 b.82.1.6 120431 2pamA 141 0.001360 b.82.1.1 149348 3d0jA 140 0.001863 2vpvA 166 0.002063 1zvfA 176 0.002357 b.82.1.20 146029 2opkA 112 0.002468 2pa7A 141 0.003050 b.82.1.1 149339 3gbgA 276 0.004336 3h1wA 393 0.005181 1zx5A 300 0.006461 b.82.1.3 125763 2wfpA 394 0.007626 3k3oA 371 0.04166 3ejkA 174 0.04675 2wwuA 371 0.04724 3d8cA 349 0.06251 3esgA 193 0.07419 2yu1A 451 0.08340 3es4A 116 0.09815 1e5rA 290 0.1996 b.82.2.4 59276 1h2kA 349 0.3524 b.82.2.6 76572 1pmiA 440 0.4241 b.82.1.3 28114 1pmi 440 0.5783 1rl3A 288 0.6191 b.82.3.2,b.82.3.2 104975,104976 1o5uA 101 0.6268 b.82.1.8 92518 3bpzA 202 0.6590 2ptmA 198 0.7864 2rg4A 216 0.8607 2arcA 164 1.021 b.82.4.1 28148 1nxmA 197 1.096 b.82.1.1 86385 1vrbA 342 1.381 b.82.2.11 120450 2qvsB 310 1.490 1qwrA 319 1.853 b.82.1.3 96491 3fhiB 154 1.883 3idbB 161 1.960 2fmyA 220 3.158 2ixkA 184 3.404 1o7fA 469 3.450 a.4.5.31,b.82.3.2,b.82.3.2 81131,81132,81133 3eo6A 106 3.497 2c0zA 216 3.702 b.82.1.1 129615 3k2oA 336 4.342 1ne6A 283 4.513 b.82.3.2,b.82.3.2 91831,91832 2d93A 134 4.800 3dl3A 119 4.816 b.82.2.13 157762 2oyzA 94 5.341 b.82.1.22 149082 3hqxA 111 6.411 1aohA 147 6.500 b.2.2.2 22401 1eybA 471 7.149 b.82.1.4 28115 2cclA 158 7.256 b.2.2.2 130248 1wgpA 137 8.221 b.82.3.2 114619 2zklA 369 8.569 3bb6A 127 8.570 b.82.2.13 155045 1v0eA 666 8.759 b.68.1.2,b.108.1.3 113466,113467 2qjvA 270 8.811 1npeA 267 8.998 b.68.5.1 92032 2zwnA 339 10.01 2a1xA 308 10.66 b.82.2.9 126022 1kbvA 327 11.83 b.6.1.3,b.6.1.3 68395,68396 2qt5A 200 14.15 2pqqA 149 14.44 2p4oA 306 14.78 b.68.6.3 149216 3e17A 88 15.33 1vp6A 138 17.50 b.82.3.2 113939 2zooA 442 17.64 1oi6A 205 17.85 b.82.1.1 103940 1s4cA 155 18.38 b.82.2.7 118860 2z69A 154 19.63 1xl4A 301 19.70 b.1.18.16,f.14.1.1 115430,115431 3km5A 180 19.94 1q3eA 207 20.29 b.82.3.2 95669 2v4nA 254 20.39 3gdcA 288 20.81 1o6gA 710 20.98 b.69.7.1,c.69.1.4 81087,81088 1mdoA 393 21.77 c.67.1.4 79013 2wqkA 251 24.33 1ep0A 185 26.07 b.82.1.1 28080 1ywkA 289 27.12 b.82.1.13 124155 1dgwX 79 27.44 b.82.1.2 28091 2h6bA 250 27.70 a.4.5.4,b.82.3.2 147228,147229 1hw5A 210 28.64 a.4.5.4,b.82.3.2 16098,28137 1rydA 387 29.54 c.2.1.3,d.81.1.5 118801,118802 2wwjA 348 30.21 2rftA 344 30.36 1omiA 248 30.64 b.82.3.3,a.4.5.4 87079,87080 2bgcA 238 31.64 a.4.5.4,b.82.3.3 128458,128459 2ajuH 219 31.74 3h3zA 235 33.15 3e97A 231 34.03 3g5wA 318 34.67 2we3A 264 36.62 3b8xA 390 37.35 1nnwA 252 38.53 d.159.1.5 80674 3cf6E 694 38.86 1upiA 225 42.28 b.82.1.1 99757 1cx4A 305 42.55 b.82.3.2,b.82.3.2 59099,59100 1kcvH 217 43.89 b.1.1.1,b.1.1.2 72315,72316 1zybA 232 43.94 a.4.5.4,b.82.3.2 125815,125816 3dkhA 559 45.20 2phjA 251 45.40 1a2zA 220 45.56 c.56.4.1 33794 3dczA 207 46.04 3ce1A 168 46.47 3emrA 310 47.92 3h63A 315 49.08 2o62A 270 49.25 b.60.1.9,b.60.1.9 148622,148623 3gbnA 331 49.97 3gydA 187 51.04 1xruA 282 52.23 b.82.1.13 122262 1rd8A 335 52.84 b.19.1.2 97308 3dv8A 220 52.91 3httA 324 53.72 3fx3A 237 56.20 1s4iA 175 56.49 1k5jA 124 57.90 b.121.3.1 68201 2ouiA 360 58.64 2hqsA 415 60.85 b.68.4.1,c.51.2.1 136662,136663 2h6cA 232 61.26 a.4.5.4,b.82.3.2 147232,147233 3dn7A 194 61.46 3c5oA 157 61.88 3fm2A 135 63.88 2b9uA 176 65.24 3fdyA 623 68.63 2fvkA 559 69.82 b.92.1.3,c.1.9.6 134204,134205 3e6cC 250 75.46 a.4.5.4,b.82.3.2 158038,158039 1rvxA 327 76.14 b.19.1.2 97937 1ru4A 400 76.48 b.80.1.9 97836 1rcy 151 77.19 1bec 238 78.29 1cruA 454 78.40 b.68.2.1 27617 2v5mA 388 78.53 1u3nA 162 78.54 3bcxA 437 79.79 1i6xA 209 81.91 a.4.5.4,b.82.3.2 83673,83674 1x9lA 149 82.58 b.2.10.1 109528 3d0sA 227 82.97 3cbtA 237 83.24 2ppeA 343 85.76 b.6.1.3,b.6.1.3 149769,149770 3dr7A 391 85.79 2qmaA 497 86.09 1jaeA 471 88.12 b.71.1.1,c.1.8.1 27773,28760 4kbpA 432 88.44 b.1.12.1,d.159.1.1 22345,42064 1ru7A 327 89.32 b.19.1.2 97837