# List of top-scoring protein chains for t04-w0.5-1-dssp-ehl2-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://compbio.soe.ucsc.edu/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2qdrA 303 7.33e-17 1tq5A 242 8.75e-14 b.82.1.12 119311 2vecA 256 1.98e-13 2p17A 277 4.69e-13 1j1lA 290 6.12e-13 b.82.1.12 90766 1rc6A 261 1.67e-12 b.82.1.11 97287 1sefA 274 3.50e-12 b.82.1.11 105452 3cjxA 165 6.71e-12 2o1qA 145 1.58e-11 b.82.1.21 148547 2phdA 368 2.49e-11 b.82.1.23 149468 3ebrA 159 5.03e-11 2d40A 354 7.73e-11 b.82.1.23 146454 1juhA 350 1.33e-10 b.82.1.5 71884 1y3tA 337 3.40e-10 b.82.1.5 122600 2h0vA 338 5.60e-10 1sfnA 246 6.93e-10 b.82.1.11 105496 2q1zB 195 6.98e-10 2pfwA 116 8.00e-10 3kgzA 156 1.19e-09 3ibmA 167 1.88e-09 1vj2A 126 2.47e-09 b.82.1.10 100796 2oa2A 148 2.91e-09 1o4tA 133 3.09e-09 b.82.1.9 86622 3i7dA 163 3.13e-09 3cewA 125 5.12e-09 2vqaA 361 5.17e-09 1j58A 385 5.21e-09 b.82.1.2 71531 3ht1A 145 5.47e-09 3h8uA 125 7.16e-09 2ozjA 114 9.15e-09 1v70A 105 9.75e-09 b.82.1.9 113555 2q30A 110 1.34e-08 1yhfA 115 1.82e-08 b.82.1.9 123176 1lr5A 163 2.46e-08 b.82.1.2 74215 2o8qA 134 2.56e-08 3c3vA 510 2.64e-08 2et1A 201 3.14e-08 b.82.1.2 132351 2e9qA 459 3.32e-08 2gc1A 188 4.26e-08 b.82.1.7 134928 2b8mA 117 5.13e-08 b.82.1.18 128092 2gu9A 113 5.19e-08 3es1A 172 5.80e-08 3h7jA 243 6.13e-08 2d5fA 493 6.14e-08 3l2hA 162 6.71e-08 2qnkA 286 1.04e-07 2ea7A 434 1.68e-07 3fz3A 531 2.21e-07 1od5A 492 2.77e-07 b.82.1.2,b.82.1.2 86832,86833 3lwcA 119 4.07e-07 1fi2A 201 4.13e-07 b.82.1.2 59845 1y9qA 192 5.40e-07 a.35.1.8,b.82.1.15 116592,116593 3d82A 102 9.43e-07 2pytA 133 1.18e-06 b.82.1.24 149957 3fjsA 114 1.36e-06 1x82A 190 1.41e-06 b.82.1.7 114955 2oziA 98 2.58e-06 3eqeA 171 2.94e-06 3lagA 98 4.35e-06 2fqpA 97 4.78e-06 3elnA 200 6.15e-06 b.82.1.19 158185 2atfA 200 6.56e-06 b.82.1.19 127290 2phlA 397 7.83e-06 b.82.1.2,b.82.1.2 28082,28083 1cauB 184 9.60e-06 b.82.1.2 28103 2b5hA 200 1.51e-05 b.82.1.19 127894 1dgwA 178 1.93e-05 b.82.1.2 28090 3g7dA 443 3.02e-05 3bcwA 123 3.12e-05 2f4pA 147 3.38e-05 b.82.1.9 132933 1xjaA 178 6.58e-05 b.82.4.1 115382 2bnmA 198 0.000172 a.35.1.3,b.82.1.10 128835,128836 1qxrA 189 0.000264 b.82.1.7 96552 2gm6A 208 0.000302 b.82.1.19 147130 2i45A 107 0.000371 1vr3A 191 0.000814 b.82.1.6 120431 1zrrA 179 0.000866 b.82.1.6 125555 1yfuA 174 0.001451 b.82.1.20 123094 2pamA 141 0.001873 b.82.1.1 149348 3d0jA 140 0.005036 2vpvA 166 0.005348 2pa7A 141 0.005437 b.82.1.1 149339 2opkA 112 0.006096 1zvfA 176 0.006309 b.82.1.20 146029 3gbgA 276 0.009181 3h1wA 393 0.01572 1zx5A 300 0.01966 b.82.1.3 125763 2wfpA 394 0.03335 3ejkA 174 0.06215 3d8cA 349 0.07981 2wwuA 371 0.08303 3k3oA 371 0.1004 3esgA 193 0.1531 2yu1A 451 0.1536 3es4A 116 0.3713 1e5rA 290 0.5735 b.82.2.4 59276 1h2kA 349 0.6911 b.82.2.6 76572 1pmiA 440 1.152 b.82.1.3 28114 1nxmA 197 1.188 b.82.1.1 86385 1rl3A 288 1.223 b.82.3.2,b.82.3.2 104975,104976 1o5uA 101 1.291 b.82.1.8 92518 1pmi 440 1.643 2ptmA 198 1.912 2rg4A 216 1.977 2qvsB 310 2.069 1vrbA 342 2.395 b.82.2.11 120450 3bpzA 202 2.443 2arcA 164 3.874 b.82.4.1 28148 1qwrA 319 4.270 b.82.1.3 96491 3fhiB 154 5.046 3idbB 161 5.192 3eo6A 106 5.397 2d93A 134 5.775 2ixkA 184 5.849 2fmyA 220 6.068 3k2oA 336 6.364 1o7fA 469 6.928 a.4.5.31,b.82.3.2,b.82.3.2 81131,81132,81133 2c0zA 216 7.307 b.82.1.1 129615 2zwnA 339 7.710 3hqxA 111 8.607 1wgpA 137 10.82 b.82.3.2 114619 2oyzA 94 11.85 b.82.1.22 149082 1ne6A 283 12.09 b.82.3.2,b.82.3.2 91831,91832 3e17A 88 12.94 2a1xA 308 13.04 b.82.2.9 126022 2v4nA 254 14.60 1dgwX 79 14.63 b.82.1.2 28091 2cclA 158 15.30 b.2.2.2 130248 1mdoA 393 15.85 c.67.1.4 79013 3gdcA 288 16.97 2qt5A 200 17.84 3dl3A 119 19.48 b.82.2.13 157762 2phjA 251 19.70 2wqkA 251 20.30 2zooA 442 20.41 1npeA 267 21.62 b.68.5.1 92032 2qmaA 497 21.92 3b8xA 390 22.55 1v0eA 666 22.93 b.68.1.2,b.108.1.3 113466,113467 3bb6A 127 24.07 b.82.2.13 155045 1aohA 147 24.31 b.2.2.2 22401 1omiA 248 25.25 b.82.3.3,a.4.5.4 87079,87080 2ajuH 219 26.39 2qjvA 270 26.57 1oi6A 205 26.61 b.82.1.1 103940 3km5A 180 27.50 1xl4A 301 30.70 b.1.18.16,f.14.1.1 115430,115431 1upiA 225 30.89 b.82.1.1 99757 2we3A 264 31.61 3gbnA 331 34.65 1pv9A 348 34.85 c.55.2.1,d.127.1.1 95157,95158 1rd8A 335 35.27 b.19.1.2 97308 1s4cA 155 36.75 b.82.2.7 118860 2rftA 344 36.84 1rydA 387 37.03 c.2.1.3,d.81.1.5 118801,118802 3dr7A 391 37.24 2b9uA 176 37.40 3fdyA 623 37.86 1eybA 471 41.28 b.82.1.4 28115 2o62A 270 41.73 b.60.1.9,b.60.1.9 148622,148623 3g5wA 318 42.05 2z69A 154 44.25 1rvxA 327 45.68 b.19.1.2 97937 2pqqA 149 47.10 1ru7A 327 47.41 b.19.1.2 97837 3httA 324 48.67 1ep0A 185 50.88 b.82.1.1 28080 2zklA 369 51.19 2wwjA 348 51.73 3dkhA 559 52.78 2h6bA 250 55.28 a.4.5.4,b.82.3.2 147228,147229 1mkaA 171 55.33 d.38.1.2 38543 1ruzH 328 55.62 b.19.1.2 97889 3emrA 310 55.82 1vp6A 138 56.31 b.82.3.2 113939 2ih8A 559 59.03 b.6.1.3,b.6.1.3,b.6.1.3 137407,137408,137409 2p4oA 306 59.47 b.68.6.3 149216 1zdsA 336 59.64 b.6.1.3,b.6.1.3 124952,124953 2piaA 321 60.14 b.43.4.2,c.25.1.2,d.15.4.2 25663,31553,37704 3ce1A 168 60.20 2ppeA 343 60.72 b.6.1.3,b.6.1.3 149769,149770 1u3nA 162 61.40 1x9lA 149 61.53 b.2.10.1 109528 2bw4A 340 62.60 b.6.1.3,b.6.1.3 129320,129321 1zybA 232 64.28 a.4.5.4,b.82.3.2 125815,125816 1q3eA 207 67.91 b.82.3.2 95669 3m2tA 359 70.95 2ouiA 360 71.08 2yuhA 179 73.31 3cf6E 694 74.27 1h4rA 314 77.15 a.11.2.1,b.55.1.5,d.15.1.4 65616,65617,65618 2bgcA 238 78.40 a.4.5.4,b.82.3.3 128458,128459 3c5oA 157 79.71 1xnzA 264 82.25 d.127.1.1 115673 4kbpA 432 83.69 b.1.12.1,d.159.1.1 22345,42064 1hw5A 210 84.13 a.4.5.4,b.82.3.2 16098,28137 1rvtH 328 87.33 b.19.1.2 97931 1kbvA 327 87.59 b.6.1.3,b.6.1.3 68395,68396 2x1wL 213 88.50 1rv0H 328 88.99 b.19.1.2 97895 1o6gA 710 89.22 b.69.7.1,c.69.1.4 81087,81088