# List of top-scoring protein chains for t04-w0.5-1-bys-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://compbio.soe.ucsc.edu/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2qdrA 303 2.94e-18 1tq5A 242 1.09e-14 b.82.1.12 119311 2vecA 256 2.42e-14 2p17A 277 3.50e-14 1j1lA 290 5.71e-14 b.82.1.12 90766 1sefA 274 8.93e-14 b.82.1.11 105452 1rc6A 261 1.03e-13 b.82.1.11 97287 3cjxA 165 2.07e-13 2o1qA 145 5.01e-13 b.82.1.21 148547 3ebrA 159 1.28e-12 2phdA 368 1.39e-12 b.82.1.23 149468 2d40A 354 4.36e-12 b.82.1.23 146454 1juhA 350 1.30e-11 b.82.1.5 71884 1y3tA 337 1.58e-11 b.82.1.5 122600 2q1zB 195 3.20e-11 2h0vA 338 3.24e-11 1sfnA 246 5.01e-11 b.82.1.11 105496 2pfwA 116 5.49e-11 3ibmA 167 1.23e-10 3kgzA 156 1.28e-10 2vqaA 361 1.89e-10 1o4tA 133 2.24e-10 b.82.1.9 86622 1vj2A 126 2.28e-10 b.82.1.10 100796 1j58A 385 2.33e-10 b.82.1.2 71531 3i7dA 163 2.90e-10 2oa2A 148 3.14e-10 3cewA 125 5.21e-10 3ht1A 145 6.22e-10 1v70A 105 7.18e-10 b.82.1.9 113555 2q30A 110 8.02e-10 3h8uA 125 8.96e-10 1yhfA 115 1.20e-09 b.82.1.9 123176 2ozjA 114 1.27e-09 1lr5A 163 1.68e-09 b.82.1.2 74215 2e9qA 459 2.43e-09 2et1A 201 2.79e-09 b.82.1.2 132351 3h7jA 243 3.18e-09 2b8mA 117 3.41e-09 b.82.1.18 128092 3c3vA 510 3.55e-09 3es1A 172 3.60e-09 2o8qA 134 4.45e-09 2gu9A 113 4.86e-09 2gc1A 188 5.14e-09 b.82.1.7 134928 2d5fA 493 6.07e-09 2qnkA 286 6.08e-09 3l2hA 162 7.31e-09 2ea7A 434 9.23e-09 1od5A 492 2.13e-08 b.82.1.2,b.82.1.2 86832,86833 3fz3A 531 2.26e-08 1fi2A 201 3.31e-08 b.82.1.2 59845 3lwcA 119 3.44e-08 1y9qA 192 6.51e-08 a.35.1.8,b.82.1.15 116592,116593 2pytA 133 8.00e-08 b.82.1.24 149957 3d82A 102 1.08e-07 3fjsA 114 2.07e-07 1x82A 190 3.23e-07 b.82.1.7 114955 3eqeA 171 4.70e-07 2oziA 98 4.85e-07 3elnA 200 5.30e-07 b.82.1.19 158185 2fqpA 97 8.55e-07 3lagA 98 9.08e-07 2atfA 200 9.53e-07 b.82.1.19 127290 2phlA 397 9.69e-07 b.82.1.2,b.82.1.2 28082,28083 1cauB 184 1.82e-06 b.82.1.2 28103 2b5hA 200 2.23e-06 b.82.1.19 127894 1dgwA 178 3.40e-06 b.82.1.2 28090 2f4pA 147 4.48e-06 b.82.1.9 132933 3g7dA 443 4.57e-06 3bcwA 123 5.18e-06 1xjaA 178 1.21e-05 b.82.4.1 115382 2bnmA 198 1.75e-05 a.35.1.3,b.82.1.10 128835,128836 2i45A 107 2.69e-05 1qxrA 189 7.46e-05 b.82.1.7 96552 2gm6A 208 7.64e-05 b.82.1.19 147130 1zrrA 179 0.000110 b.82.1.6 125555 1vr3A 191 0.000120 b.82.1.6 120431 1yfuA 174 0.000220 b.82.1.20 123094 2pamA 141 0.000548 b.82.1.1 149348 3d0jA 140 0.000653 1zvfA 176 0.000953 b.82.1.20 146029 2pa7A 141 0.001082 b.82.1.1 149339 2opkA 112 0.001341 2vpvA 166 0.001476 3gbgA 276 0.001534 3h1wA 393 0.004415 2wfpA 394 0.005146 1zx5A 300 0.005306 b.82.1.3 125763 2wwuA 371 0.009819 3k3oA 371 0.01546 2yu1A 451 0.01932 3ejkA 174 0.02043 3d8cA 349 0.02114 3es4A 116 0.05077 1pmiA 440 0.05088 b.82.1.3 28114 1h2kA 349 0.1417 b.82.2.6 76572 1e5rA 290 0.1961 b.82.2.4 59276 3esgA 193 0.2097 1nxmA 197 0.2910 b.82.1.1 86385 1pmi 440 0.2930 2rg4A 216 0.3879 1o5uA 101 0.3977 b.82.1.8 92518 2ptmA 198 0.5097 3bpzA 202 0.7108 1rl3A 288 0.7177 b.82.3.2,b.82.3.2 104975,104976 2arcA 164 0.8863 b.82.4.1 28148 1vrbA 342 0.9491 b.82.2.11 120450 3k2oA 336 0.9685 1qwrA 319 1.181 b.82.1.3 96491 3fhiB 154 1.383 2ixkA 184 1.830 2qjvA 270 2.642 3idbB 161 2.799 2qvsB 310 2.936 2d93A 134 3.126 2fmyA 220 3.563 2c0zA 216 3.660 b.82.1.1 129615 1wgpA 137 4.110 b.82.3.2 114619 3eo6A 106 4.481 3bb6A 127 4.800 b.82.2.13 155045 2we3A 264 4.987 2zklA 369 5.051 3hqxA 111 5.258 2oyzA 94 5.729 b.82.1.22 149082 2a1xA 308 5.789 b.82.2.9 126022 1dgwX 79 6.944 b.82.1.2 28091 1o7fA 469 7.128 a.4.5.31,b.82.3.2,b.82.3.2 81131,81132,81133 1ne6A 283 7.491 b.82.3.2,b.82.3.2 91831,91832 1aohA 147 8.430 b.2.2.2 22401 1q3eA 207 9.246 b.82.3.2 95669 1omiA 248 9.609 b.82.3.3,a.4.5.4 87079,87080 3dl3A 119 10.54 b.82.2.13 157762 2zwnA 339 10.74 2o62A 270 11.74 b.60.1.9,b.60.1.9 148622,148623 2v4nA 254 11.84 1upiA 225 11.93 b.82.1.1 99757 2zooA 442 12.35 1oi6A 205 12.44 b.82.1.1 103940 2rftA 344 12.45 2cclA 158 13.37 b.2.2.2 130248 3b8xA 390 13.49 2b9uA 176 13.64 1s4cA 155 13.87 b.82.2.7 118860 1ep0A 185 14.97 b.82.1.1 28080 1mdoA 393 15.53 c.67.1.4 79013 1hw5A 210 15.69 a.4.5.4,b.82.3.2 16098,28137 3gdcA 288 16.37 2pqqA 149 16.68 2wqkA 251 17.46 1xl4A 301 17.70 b.1.18.16,f.14.1.1 115430,115431 3g5wA 318 19.20 2z69A 154 19.28 2h6bA 250 21.09 a.4.5.4,b.82.3.2 147228,147229 2we0A 286 22.79 1rd8A 335 26.24 b.19.1.2 97308 3fdyA 623 26.25 2phjA 251 26.54 1ywkA 289 27.37 b.82.1.13 124155 1vp6A 138 27.83 b.82.3.2 113939 3km5A 180 27.99 1npeA 267 28.75 b.68.5.1 92032 1eybA 471 28.90 b.82.1.4 28115 1o6gA 710 29.09 b.69.7.1,c.69.1.4 81087,81088 2wwjA 348 29.19 3emrA 310 30.12 2bgcA 238 32.32 a.4.5.4,b.82.3.3 128458,128459 1ruzH 328 33.47 b.19.1.2 97889 3e17A 88 34.20 1ru7A 327 36.49 b.19.1.2 97837 3gbnA 331 36.80 1v0eA 666 37.24 b.68.1.2,b.108.1.3 113466,113467 1euwA 152 37.90 b.85.4.1 28349 3dv8A 220 38.10 2ppeA 343 38.59 b.6.1.3,b.6.1.3 149769,149770 1rvxA 327 39.02 b.19.1.2 97937 3cf6E 694 39.07 1xruA 282 40.60 b.82.1.13 122262 1vyqA 173 40.94 b.85.4.1 120548 1kbvA 327 42.65 b.6.1.3,b.6.1.3 68395,68396 2qt5A 200 43.12 3e97A 231 43.71 3dr2A 305 44.99 3dn7A 194 47.36 2ismA 352 48.97 1zybA 232 49.11 a.4.5.4,b.82.3.2 125815,125816 1pv9A 348 49.26 c.55.2.1,d.127.1.1 95157,95158 3mdxA 178 49.34 2r9qA 370 49.66 1cx4A 305 49.98 b.82.3.2,b.82.3.2 59099,59100 1offA 97 50.19 d.15.4.1 86947 1w0pA 781 50.38 b.29.1.8,b.29.1.8,b.68.1.1 109038,109039,109040 2ajuH 219 52.66 1nszA 347 53.90 b.30.5.4 80724 2ojhA 297 54.03 3c5oA 157 54.78 3dkhA 559 58.01 3dr7A 391 58.42 2p4oA 306 60.17 b.68.6.3 149216 1bec 238 62.61 1rydA 387 63.93 c.2.1.3,d.81.1.5 118801,118802 1f7dA 136 64.35 b.85.4.1 28353 3httA 324 64.42 1rvtH 328 65.57 b.19.1.2 97931 1xtmA 175 66.61 1rv0H 328 67.17 b.19.1.2 97895 3ce1A 168 67.36 1czpA 98 68.74 d.15.4.1 37645 2hqsA 415 69.43 b.68.4.1,c.51.2.1 136662,136663 2aqpA 164 70.80 1kcvH 217 70.92 b.1.1.1,b.1.1.2 72315,72316 3m2tA 359 72.84 2qmaA 497 73.10 3gydA 187 73.42 3h3zA 235 75.05 2h6cA 232 75.85 a.4.5.4,b.82.3.2 147232,147233 1a70A 97 75.90 d.15.4.1 37678 1awdA 94 76.29 d.15.4.1 37673 1mkaA 171 77.55 d.38.1.2 38543 2piaA 321 78.96 b.43.4.2,c.25.1.2,d.15.4.2 25663,31553,37704 3h7kA 383 80.73 1frrA 95 80.75 d.15.4.1 37674 3ehwA 164 82.16 b.85.4.1 158154 3gf8A 296 82.98 3dkqA 243 83.06 1rcy 151 83.52 1ruyH 328 83.80 b.19.1.2 97883 1i6xA 209 84.69 a.4.5.4,b.82.3.2 83673,83674 1s4iA 175 86.34 2o4uX 334 86.50 1yudA 170 86.65 b.82.1.16 124046 1h4rA 314 87.18 a.11.2.1,b.55.1.5,d.15.1.4 65616,65617,65618 1qreA 247 89.10 b.81.1.5 28066